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Conserved domains on  [gi|1418578913|ref|YP_009487499|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Lytechinus variegatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475879)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-349 5.78e-142

NADH dehydrogenase subunit 2; Validated


:

Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 405.85  E-value: 5.78e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAI 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1418578913 321 LSPLTTKVWLISILVVLSTLSIPLTLPLY 349
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
 
Name Accession Description Interval E-value
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-349 5.78e-142

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 405.85  E-value: 5.78e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAI 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1418578913 321 LSPLTTKVWLISILVVLSTLSIPLTLPLY 349
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-296 1.79e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVpVLCS--NFSPRNVEATIKYFLVQALSAALLLNG-ALIQAwLTGSWS 85
Cdd:COG1007   107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVAfrRDDRRSSEAALKYFLLGALSSGFLLYGiSLLYG-ATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 VLEPLNNVSA------------ICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIA---PLLILFFFG---- 146
Cdd:COG1007   185 LAGIAAALAAgganspllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAfpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 147 QLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFLLFDFL 222
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaaGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1418578913 223 -----NISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:COG1007   345 srkggEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-296 1.26e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGS---- 83
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRkSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSlnfe 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  84 --------WSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLIL-------FFFGQL 148
Cdd:TIGR01770 187 dlllflsnGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 149 VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIIT----SAYSVKAAILMLIIYLVINTAIFLLFDFLNI 224
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGllagTLEGIKAVLFYIFIYALMSLGAFGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1418578913 225 STLGHLNTTSQLS------PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:TIGR01770 347 YKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-286 3.03e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  25 NWFIIWVGLELSTLALVPVLCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV-----------LEPLNN 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaltgglNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  93 VSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIA-TWQKIAPLLI-----LFFFGQLVISYLLIVASLISILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 167 WGGLNQTQVRKILAFSSIGNMGWLIITSA----YSVKAAILMLIIYLVINTAIFLLF-----DFLNISTLGHLNTTSQLS 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1418578913 238 PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGS 286
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-349 5.78e-142

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 405.85  E-value: 5.78e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAI 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1418578913 321 LSPLTTKVWLISILVVLSTLSIPLTLPLY 349
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-352 1.07e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 285.56  E-value: 1.07e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNai 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK-- 318

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1418578913 321 lsplTTKVWLISILVVLSTLSIPLTLPLYIIT 352
Cdd:MTH00112  319 ----PKKNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-351 1.89e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 284.82  E-value: 1.89e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAi 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEN- 319

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1418578913 321 lsplTTKVWLISILVVLSTLSIPLTlPLYII 351
Cdd:MTH00105  320 ----TKPMTLLPTLIILSTMLLPLT-PMLSI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 16-345 1.49e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 280.27  E-value: 1.49e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  16 GTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSVLEPLNNVSA 95
Cdd:MTH00070   16 GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPT 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  96 ICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLISILVGGWGGLNQTQV 175
Cdd:MTH00070   96 IMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 176 RKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIALVILLMLSLGGLP 255
Cdd:MTH00070  176 RKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLP 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 256 PLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAILSPLTtkvwliSILV 335
Cdd:MTH00070  256 PTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLL------SLTI 329

                         330
                  ....*....|
gi 1418578913 336 VLSTLSIPLT 345
Cdd:MTH00070  330 ILSLMLLPIT 339
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-345 1.68e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 277.46  E-value: 1.68e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   5 ISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSW 84
Cdd:MTH00135    5 VLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  85 SVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLlILFFFGQLVISYLLIVASLISILV 164
Cdd:MTH00135   85 DIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 165 GGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIALV 244
Cdd:MTH00135  164 GGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 245 ILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRnnailSPL 324
Cdd:MTH00135  244 PLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWR-----LPS 318

                         330       340
                  ....*....|....*....|.
gi 1418578913 325 TTKVWLISILVVLSTLSIPLT 345
Cdd:MTH00135  319 TQLTLPLAISTTATLMLLPLT 339
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 1.05e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 252.20  E-value: 1.05e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   1 MYRTISAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWL 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  81 TGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLI 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 161 SILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTS 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 241 IALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNnai 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT--- 317

                         330       340
                  ....*....|....*....|....*
gi 1418578913 321 lspLTTKVWLISILVVLSTLSIPLT 345
Cdd:MTH00200  318 ---KSNSNLLVGLLLLLSILGLPLT 339
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 8-351 2.95e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 191.58  E-value: 2.95e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIqawltgSWSVL 87
Cdd:MTH00160    9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIIL------NMLNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  88 EPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQlviSYLLIVASLISILVGGW 167
Cdd:MTH00160   83 MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN---NNFIIIIIILSAIIGAI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 168 GGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIALVILL 247
Cdd:MTH00160  160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 248 MLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNTGLILFPQHIISITSWRNNAILSplttk 327
Cdd:MTH00160  240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI----- 314

                         330       340
                  ....*....|....*....|....
gi 1418578913 328 vwlISILVVLSTLSIPLTLPLYII 351
Cdd:MTH00160  315 ---LNFLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-299 8.99e-58

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 190.38  E-value: 8.99e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   6 SAFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGaliqawLTGSWS 85
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 VLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVISYLLIVASLISILVG 165
Cdd:MTH00011   82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 166 GWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIALVI 245
Cdd:MTH00011  162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1418578913 246 LLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFN 299
Cdd:MTH00011  242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-298 1.59e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 176.62  E-value: 1.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   5 ISAFLFLTV-VSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGS 83
Cdd:MTH00144    4 PSNLLFLFLmVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  84 WsvleplnnVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPL-LILFFFGQLVISYLLIVASLISI 162
Cdd:MTH00144   84 W--------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 163 LVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIa 242
Cdd:MTH00144  156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGL- 234

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1418578913 243 LVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISF 298
Cdd:MTH00144  235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFF 290
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-300 1.51e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.21  E-value: 1.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGAliqaWLTGSWSVL 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG----SLSFSNLYL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  88 EPLNNVSAIclsVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVIsyLLIVASLISILVGGW 167
Cdd:MTH00197   78 SLLSVVLVI---LGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 168 GGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTLGHLNTTSQLSPTSIALVILL 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1418578913 248 MLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRISFNT 300
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-296 1.79e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVpVLCS--NFSPRNVEATIKYFLVQALSAALLLNG-ALIQAwLTGSWS 85
Cdd:COG1007   107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVAfrRDDRRSSEAALKYFLLGALSSGFLLYGiSLLYG-ATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 VLEPLNNVSA------------ICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIA---PLLILFFFG---- 146
Cdd:COG1007   185 LAGIAAALAAgganspllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAfpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 147 QLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFLLFDFL 222
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaaGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1418578913 223 -----NISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:COG1007   345 srkggEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 2.68e-33

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 128.40  E-value: 2.68e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVpVLCS--NFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV 86
Cdd:PRK05777  108 LVLFALLGMMVMVSANDLLTLFLGLELLSLPLY-ALAAlrRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSF 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  87 LEPLNNVSA------------ICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPL-----LILFFFGQLV 149
Cdd:PRK05777  187 AGIAKALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFavllrLLVVAFGGLS 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 150 --ISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGW----LIITSAYSVKAAILMLIIYLVINTAIFLLFDFL- 222
Cdd:PRK05777  267 edWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYllvgLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLr 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1418578913 223 ----NISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK05777  347 rkggEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-296 1.48e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 123.59  E-value: 1.48e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLAL-VPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSVL 87
Cdd:MTH00199  102 LILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQ 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  88 E----PLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGqLVISYLLIVASLiSIL 163
Cdd:MTH00199  182 GinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIG-PVTNVVLICAVL-SII 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 164 VGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLNIST--LGHLNTTSQLS 237
Cdd:MTH00199  260 YGAIGALNQTKIKRLLAYSGIGHMGFILfgvaIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKN 339

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1418578913 238 PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.02e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.28  E-value: 1.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  13 VVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWS------ 85
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHlsyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 VLEPLNNVSAIC-------LSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLVIsyLLIVAS 158
Cdd:MTH00196   82 VLNSGQSFSSVSvpigyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 159 LISILVGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLN--ISTLGHLNT 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieIGSFESIQASLVYLFIYIIMSICVFSIILALNvyKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1418578913 233 TSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-296 1.26e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGS---- 83
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRkSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSlnfe 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  84 --------WSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLIL-------FFFGQL 148
Cdd:TIGR01770 187 dlllflsnGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 149 VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIIT----SAYSVKAAILMLIIYLVINTAIFLLFDFLNI 224
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGllagTLEGIKAVLFYIFIYALMSLGAFGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1418578913 225 STLGHLNTTSQLS------PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:TIGR01770 347 YKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-286 3.03e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  25 NWFIIWVGLELSTLALVPVLCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV-----------LEPLNN 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaltgglNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  93 VSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIA-TWQKIAPLLI-----LFFFGQLVISYLLIVASLISILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 167 WGGLNQTQVRKILAFSSIGNMGWLIITSA----YSVKAAILMLIIYLVINTAIFLLF-----DFLNISTLGHLNTTSQLS 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1418578913 238 PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGS 286
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-296 3.69e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 97.62  E-value: 3.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNV---------EATIKYFLVQALSAALLLNGALIQAW 79
Cdd:MTH00198  193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  80 LTGS--------WSVLEPLN------NVSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFF 145
Cdd:MTH00198  273 FTGNegmlgtilSATLETTNielrqgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 146 gqLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII---TSAY-SVKAAILMLIIYLVINTAIFLLFDF 221
Cdd:MTH00198  353 --VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIgvsAGTYeSLQASWTYAVTYLVSALASFTVICT 430

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 222 LN---------------------ISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFtslYFLISNGFIAFSS 280
Cdd:MTH00198  431 LEefgtrtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKW---FILVGSIKIAFSS 507

                         330       340
                  ....*....|....*....|....*.
gi 1418578913 281 IM----------IVGSLLSLFFYLRI 296
Cdd:MTH00198  508 SLsiyylvalfaIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-296 8.12e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 92.90  E-value: 8.12e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWS-- 85
Cdd:COG0651   111 PLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNma 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 --------VLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLP-----FFQGLIIatwqKIAPLLILFFF------- 145
Cdd:COG0651   191 dlaarlaeLDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLT----KVGVYAILRVLtllfgad 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 146 GQLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLV----INTAIFLLFDF 221
Cdd:COG0651   267 PALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAAGA 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1418578913 222 L----NISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:COG0651   347 IeratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 8-341 7.26e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 75.43  E-value: 7.26e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLElsTLALVPVLCSNFSPRNV---EATIKYFLVQALSAALLLNGAliqAWLTGS- 83
Cdd:CHL00049  115 LFVLTATLGGMFLCGANDLITIFVALE--CLSLCSYLLSGYTKKDVrsnEATMKYLLMGGASSSILVYGF---SWLYGLs 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  84 ------WSVLEPLNN----------VSAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLL------- 140
Cdd:CHL00049  190 ggeielQEIVNGLINtqmynspgisIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifd 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 141 ILFFFGQLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII-----TSAYSVKAAILMLIIYLVINTAI 215
Cdd:CHL00049  270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgiivgDSNDGYASMITYMLFYIFMNLGT 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 216 F---LLFDFL----NISTLGHLNTTSQLSPTSIALVillMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLL 288
Cdd:CHL00049  350 FaciVLFGLRtgtdNIRDYAGLYTKDPFLALSLALC---LLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVI 426

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1418578913 289 SLFFYLRISfntgLILFPQHIISITSWRNNAILSPLTTKVWL---ISILVVLSTLS 341
Cdd:CHL00049  427 SIYYYLKII----KLLMTGRNQEITPYVRNYRRSPLRSNNSIelsMIVCVIASTIP 478
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-296 2.85e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 70.68  E-value: 2.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   7 AFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLL---------NGALIQ 77
Cdd:PRK08375  109 YALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLigvgllygvTGTLNM 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  78 AWLTGSWSVLEPLNNVSAICLsVALAFKLGLAPCHFWFPDVLQGLP-----FFQGL-----IIATWQKIAPLLILFFFGQ 147
Cdd:PRK08375  189 ADLAGALAENPTVVTAFGFVL-LALALKAAVFPLHTWLPRAYPAAPpvvtaLLSGLvtkvaVYALIRIYFTVFGGDFRFA 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 148 LVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFL----LF 219
Cdd:PRK08375  268 LGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLglalLTPLALAAGLLHLLHHALMKGALFLaagaIE 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1418578913 220 DFLNISTLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK08375  348 VTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-296 1.74e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.99  E-value: 1.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  50 PRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSVLEP----LNNVSAICLSVAL-------AFKLGLAPCHFWFPDV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAialaLITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 119 LQGLP-----FFQGLIIATWQKIAPLLILFFFGQLVISY--LLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGW-- 189
Cdd:PRK02504  237 YEGSPtpvvaFLSVGSKAAGFALAIRLLVTAFPSFDEQWklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvm 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 190 --LIITSAYSVKAAILMLIIYLVINTAIFLLFDFLNISTlghlnTTSQLSPTS--------IALVI-LLMLSLGGLPPLT 258
Cdd:PRK02504  317 igLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRT-----GTDQISDYAglyqkdplLTLGLsLCLLSLGGIPPLA 391

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1418578913 259 GFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK02504  392 GFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 8-267 3.04e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 61.11  E-value: 3.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSVL 87
Cdd:TIGR01972 110 ALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  88 EPLNNVSA---------ICLSVALAFKLGLAPCHFWFPDV-LQGLPFFQGLIIATWQKIAP------LLILFFFGQLVIS 151
Cdd:TIGR01972 190 LELLNLPLpfgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTygflrfNLPLFPDASLYFA 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 152 YLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFLLFDFL----- 222
Cdd:TIGR01972 270 PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgifsFNELGISGAVFQMISHGLITAALFLLVGVLyerah 349

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1418578913 223 --NISTLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSL 267
Cdd:TIGR01972 350 trDIAKYGGL---ANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 27-296 4.09e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.17  E-value: 4.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  27 FIIWVGLELSTLALVPVLcsnfSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSVLEPLNNVS-----------A 95
Cdd:PRK08668  124 YIFWEIMTFSSFMMVPMG----KKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivF 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  96 ICLSVALAFKLGLAPCHFWFPDVLQGLP-----FFQG-------LIIATWQKIAPLLILF-----FFGQLVISYLLIVAS 158
Cdd:PRK08668  200 LFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsaVLSGqlsklgaYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLG 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 159 LISILVGGWGGLNQTQVRKILAFSSIGNMGWLIIT----SAYSVKAAilmliIYLVINTAIFLLFDFLNISTLGHLNTTS 234
Cdd:PRK08668  280 NISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGlglgTSLGFAGG-----LFHVFNHALFKGLFFLIFAAVIYRTGTT 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1418578913 235 QLS---------PTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK08668  355 KISemggliekmPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRP 425
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-343 5.40e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 57.29  E-value: 5.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLE-LSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALL-------------LNGA 74
Cdd:PRK12667  118 LLLGLEAGMLGILLTGDAFNLFVMLEvLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYflalaflyatfgtLNMA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  75 LIQAWLTGSWSVL---EPLNNVSAICLSVALAF-----KLGLAPCHFWFPDVLQGLP-----FFQGLIIATWqkiAPLLI 141
Cdd:PRK12667  198 DLSAKIRGLSFPLtggLAGNPPLALGVALALALwaftiKAAIFPNHFWLPDAHPAAPspvsaMLSGLVVNVG---AYAII 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 142 LFFF-----------GQLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLv 210
Cdd:PRK12667  275 RFLYtifgispslidFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHI- 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 211 INTAIFLLFDFL------------NISTLGHLNTTSQLspTSIALVILLMlSLGGLPPLTGFILKFTSLYFLISNGFIAF 278
Cdd:PRK12667  354 INHAIAKSLLFLasgvfihaagtrDIDELAGLGRKMPI--ASFAFLIGAL-SLVGIPPLNGFFSKLLLFNALLESGFYLP 430

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1418578913 279 SSIMIVGSLLSLFFYLRISFNtgLILFPQHIISITSWRNNAILSPLTTKVWLISILVVLSTLSIP 343
Cdd:PRK12667  431 ALVLLIASAISLVGYFRAWYS--LFFGKPKSGEEVEHKESPSMSVVILVLALAVLILGILALFLP 493
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-346 1.30e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 53.20  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV-- 86
Cdd:PRK12662  115 AFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMgd 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  87 ----LEPLNNVSAI-----CLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIA-TWQKIAPLLIL----------FFFG 146
Cdd:PRK12662  195 mfliIQDLPTNRAIqigvlFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIIrivydvfkanFVFT 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 147 QLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLL---- 218
Cdd:PRK12662  275 TLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIIlavsLNTYYGLAAAVAYIVNHSIVKSALFMVsgsi 354

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 219 ---FDFLNISTLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLR 295
Cdd:PRK12662  355 syhFGTTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWK 431

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1418578913 296 ISfnTGLILFPQHIISITSWRNNAILSPLTTKVWLISIL-VVLSTLSIPLTL 346
Cdd:PRK12662  432 IV--EALYFESRMVESKANDKAFKTPNAMVLCIWIMAILsIIVGIYPIPLTL 481
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-264 2.41e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 52.39  E-value: 2.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  55 ATIKYFLVQALSAALLLNGALIQAWLTGSWSV-LEPLNNVSA---------ICLSVALAFKLGLAPCHFWFPD------- 117
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdYEPLRSHTLplstqllllAPILVGFGIKIPLVPFHTWLPDahveast 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 118 ----VLQG----------LPFFQGLIIATWQKIAPLLIlfffgqlvisylliVASLISILVGGWGGLNQTQVRKILAFSS 183
Cdd:PRK06473  238 pvsvLLAGvllklgtyglLRFGVGLFPEAWVYLAPWLA--------------TWAVVSVLYGASCAIAQKDMKKMVAYSS 303

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 184 IGNMGWLIITSA----YSVKAAILMLIIYLVINTAIFLLFDFL-------NISTLGHLNTTSQLSPTSIALVILLMLSLG 252
Cdd:PRK06473  304 IGHMGYILLAAAaatpLSILAAVFQMISHGLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMASA 383

                         250
                  ....*....|..
gi 1418578913 253 GLPPLTGFILKF 264
Cdd:PRK06473  384 GIPGMVGFIAEF 395
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-298 2.51e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 2.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLA-LVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGAliqAWLTGSWSVL 87
Cdd:PRK08376  126 LILLLELGMLGMAITGDLFNFFVFLEIMSIAsYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTL 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  88 -------------EPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLP--FFQGLIIATWQKIAPLLILFF------FG 146
Cdd:PRK08376  203 nmaylavkmsenpTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFsiygpaIN 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 147 QLVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII-----------TSAYSVKAAILMLIIYLVINTAI 215
Cdd:PRK08376  283 LATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLglgvglaalgdPAMASYGEIALAGGIYHIVNHAL 362

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 216 FLLFDFLNISTLGH------LNTTSQLSPTSIALVILLM---LSLGGLPPLTGFILKftslyFLISNGFIAF----SSIM 282
Cdd:PRK08376  363 YKALLFLTAGAVIYetgtrnLNELGGLARTMPKTTIAFLigaAAIVGLPPFNGFASK-----WLIYESSALFnpilGVIA 437

                         330
                  ....*....|....*.
gi 1418578913 283 IVGSLLSLFFYLRISF 298
Cdd:PRK08376  438 MIGSVLTLASFVKVFH 453
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 7-296 3.25e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 51.69  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   7 AFLFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV 86
Cdd:PRK08377  111 AMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNM 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  87 LEPLNNVSAICLSVA----------LAFKLGLAPCHFWFPDVLQGLP------FFQGLIIATWQKIAPLLILFFF--GQL 148
Cdd:PRK08377  191 AHIAQLAGTIDPTVAqvglallifgLAVEAELFPLNAWAPDAYQAAPhpitvmFSAFVVKAGLYAMARILYLMQNanGWS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 149 VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLNI 224
Cdd:PRK08377  271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIAlalaLGTQAGVDAGVFHMINHAIVKALLFLAVGYVGI 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1418578913 225 STLGHL-----NTTSQLSPTSIALVIlLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK08377  351 TLGGTEiekfeGLGKRMPLTALALTI-GALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 98-263 4.05e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 51.51  E-value: 4.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  98 LSVALAFKLGLAPCHFWFPDVLQGLP-----FFQGLI--IATWQKIAPLLILFFFGQLviSYLLIVASLISILVGGWGGL 170
Cdd:PRK12665  215 LLVAFGIKAAVFPLSFWLPDSYPTAPapvtaVFAGLLtkVGVYAIIRTHTLLFPGGGL--DTLLMVVALLTMVVGILGAI 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 171 NQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLN----ISTLGHLNTTSQLSPTSIA 242
Cdd:PRK12665  293 AQSDIKRLLSFTLVSHIGYMVfgiaLSTVAGLSGAIYYVAHHITVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLLAV 372

                         170       180
                  ....*....|....*....|.
gi 1418578913 243 LVILLMLSLGGLPPLTGFILK 263
Cdd:PRK12665  373 LFFVPALNLGGIPPFSGFIGK 393
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-295 2.24e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.31  E-value: 2.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELstlALVPV--LCSNF-SPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSW 84
Cdd:COG1008   115 ALLLLLEAGMIGVFLALDLFLFYVFWEL---MLIPMyfLIGIWgGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGAL 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  85 SV-LEPLNNVS---------AICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIA-------TWQKIAPLLILFFFGQ 147
Cdd:COG1008   192 TFdIAELAAAPlpltaqlllFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAgvllkmgGYGLLRFALPLFPEAS 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 148 LVISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFLLFDFL- 222
Cdd:COG1008   272 AYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLgifaLNPLGLQGAVLQMVSHGLITAALFLLVGVLy 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1418578913 223 ------NISTLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNgFIAFSSIMIVGSLLSLFFYLR 295
Cdd:COG1008   352 drthtrDIADLGGL---AKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV-NPWLAILAALGLILTAAYLLW 426
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
149-298 4.14e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 48.41  E-value: 4.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 149 VISYLLIVASLISILVGGWGGLNQTQVRKILAF---SSIGNM--GWLIITSA-------YSVKAAILMLIIYLVINTAIF 216
Cdd:PRK12663  270 LLHPLLATMAAITMVIGALGALAYKDIRRIAGYqviSSIGFIllGLALGTPAgingaifYLVHDMVVKTALFLIAGSLVR 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 217 LLFDFlNISTLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK12663  350 LTGYR-SLQYLGGL---YRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425


                  ..
gi 1418578913 297 SF 298
Cdd:PRK12663  426 FF 427
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-296 8.25e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 47.25  E-value: 8.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  56 TIKYFLVQALSAALL-------------LNGALIQAWLTGSWSVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGL 122
Cdd:PRK07691  160 SIKYVLINVVSSAFFvvavailysvvgtLNMADISVKIAELSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPGSYYAP 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 123 P-----FFQGLIIATW-QKIAPLLILFFFGQL-VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSA 195
Cdd:PRK07691  240 PiaiaaLFGALLTKVGvYAIARTFTLFFSHDTsFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVA 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 196 YSVKAAILMLIIYL----VINTAIFLLFDFL-NISTLGHLNTTSQLSPTSIAL---VILLMLSLGGLPPLTGFILKFTSL 267
Cdd:PRK07691  320 MMTESGMIGAIYYLihdmIVKAALFLLIGIMiKITGTTDLKKMGGLIKRYPVLgwmFFIAALSLAGIPPLSGFYGKFFIV 399

                         250       260
                  ....*....|....*....|....*....
gi 1418578913 268 YFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK07691  400 EGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12650 PRK12650
DUF4040 family protein;
27-263 1.25e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  27 FIIWVGLELSTLALVpVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGS-----------WSVLEPLNNVSA 95
Cdd:PRK12650  133 VVLFVAWELVSLASF-FLIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTtslsgilhsdvWAEKPGLTTVVA 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  96 ICLSVALAFKLGLAPCHFWFPDVLQGL-PFFQGLIIATWQKIAPLLIL----FFFGQLVISYLLIVASLISILVGGWGGL 170
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAItPVSAFLHAAAVVKAGIYLLLrfspVFHDVAVWNWLLIIVGMITALMGAVFAV 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 171 NQTQVRKILAFSSIGNMGWLIIT----SAYSVKAAILMLIIYLVINTAIFLLFDFL-------NISTLGHLNTTsqlSPT 239
Cdd:PRK12650  292 QKTDLKKLTAYSTVSQLGWIVATigvgTPFALTAAVVHTLAHALFKSSLFMLIGVVdhqagtrDIRRLGSLWRR---MPF 368

                         250       260
                  ....*....|....*....|....
gi 1418578913 240 SIALVILLMLSLGGLPPLTGFILK 263
Cdd:PRK12650  369 TFVSVTIAALSMAAVPPLFGFVSK 392
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-345 2.02e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.47  E-value: 2.02e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1418578913 291 FFYLRISFNTGLILFPQHIISITSWRNNAILSPLttkvwLISILVVLSTLSIPLT 345
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTL-----LLPTLTTLSILLLPLT 50
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-290 3.29e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.69  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  20 VISTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLV------QALSAALLLNGA----LIQAWLTGSWSVLEP 89
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvMGDGEMAILWTELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  90 LN-NVSAICLSVALAF-------KLGLAPCHFWFPD-----------VLQGLPFFQGLIIATWQKIaplLILFFFGQLVI 150
Cdd:PRK06458  204 HAsLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI---LIDAAIGSDFP 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 151 SYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGwlIITSAYSV------KAAILMLIIYLVINTAIFllFDFLNI 224
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMG--LIAFALGIggplgiFAALLHMLNHSLTKSAIF--FASGNV 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1418578913 225 S------TLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSL 290
Cdd:PRK06458  357 LqkygtrDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAF 428
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-264 6.15e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 44.70  E-value: 6.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  55 ATIKYFLVQALSAALLLNGALIQAWLTGSWSV---LEPLNNVSA-------ICLSVALAFKLGLAPCHFWFPDV-LQGLP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydAISTQNLSLntqlillTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 124 FFQGLIIATWQKIAPLLILFFFGQL------VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYS 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFGLQLfpqtwsLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1418578913 198 VKAAILMLIIYLVINTAIF-LLFDFLNI----------STLGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKF 264
Cdd:PRK07363  318 TQLSLLGAVAQMISHGLILaLLFHLVGIverkvgtrdlDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEF 395
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 153-263 6.55e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.91  E-value: 6.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 153 LLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLNIST-- 226
Cdd:PRK12647  261 ILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVmllgLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETgt 340

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1418578913 227 --LGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILK 263
Cdd:PRK12647  341 rdITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAK 379
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
7-296 1.49e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.48  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   7 AFLFLTVVSGTVIVIsTENWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSWSV 86
Cdd:PRK06277  104 FLMLMGLASVSAIVL-ADDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNI 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  87 LEPLNNV-----------SAICLSVALAFKLGLAPCHFWFPDVLQGLPFFQGLIIATWQKIA----PLLILFFFGQLVI- 150
Cdd:PRK06277  183 TDIHNALlvnptspviygGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVlvalMLVIFKLFGGLSYf 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 151 ---SYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGW----LIITSAYSVKAAILMLIIYLVINTAIFLLFDFL- 222
Cdd:PRK06277  263 psaQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYvaagLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVs 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 223 ------NISTLGHLNTtsqLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIVGSLLSLFFYLRI 296
Cdd:PRK06277  343 yrtktsNLRKLGGLLP---VMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKA 419
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 9-291 1.62e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.57  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVpvLCSNFSPRNVEATIKYFLVQALSAALLLNGALIQAWLTGSW---- 84
Cdd:PRK08667  119 LFILSMLGVVASANTFSFLFFWEIMALSSFFLV--MNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFelsp 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  85 -SVLEPLNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLPF-FQGLIIATWQKIA-----PLLILFFFGQLVISYLLIVA 157
Cdd:PRK08667  197 lGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSnVSALMSGVMLKVAvyglvRFLMDVLSPELWWGVLILLA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 158 SLISILVGGWGGLNQTQVRKILAFSSIGNMG--------WLIITSAYSVKAAILMLI--IYLVINTAIFLLFDFL----- 222
Cdd:PRK08667  277 GSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDTLALLALGgaLFHSLNHALFKSLLFLtagsv 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1418578913 223 -------NISTLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIMIV-GSLLSLF 291
Cdd:PRK08667  357 vhatgtrNIEKMGGL---VKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSVADPLIKILlFSVLAIF 430
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 8-215 1.82e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTENWFIIWVGLELSTLaLVPVLCSNFSPR-NVEATIKYFLVQA---------------LSAALLL 71
Cdd:PRK08676  106 LGFNLLLSVITFAFFSDNLALFWIFAELTTV-FSAMLIAILSAReNIDAALKYIFIAStamifafigliflfsLTRQALG 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  72 NGALIQAWLTGSWSVLEP-LNNVSAICLSVALAFKLGLAPCHFWFPDVLQGLP-FFQGLIIATWQKIAPLLILFFFGQL- 148
Cdd:PRK08676  185 TGTLNWTELAAHASLLSPsVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSALLr 264

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418578913 149 ------VISYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLIITSAYSVKAAILMLIIYLVINTAI 215
Cdd:PRK08676  265 qsgaaeQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 151-298 2.18e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.80  E-value: 2.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 151 SYLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII----TSAYSVKAAILMLIIYLVINTAIFLLFDFL---- 222
Cdd:PRK05846  277 APIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLgifaGNQLGIQGAIFQMISHGLSSAALFLLVGVLydrl 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 223 ---NISTLGHLntTSQLSPTSIALVILLMLSLgGLPPLTGFILKFTSLY--FLISNGFIAFSSI-MIVGSLLSLFFYLRI 296
Cdd:PRK05846  357 htrDIADYGGL--AKVMPVLAAFFLFFAMASL-GLPGTSGFVGEFLILLgsFQVNPVIAFIATTgLILAAVYSLWLYQRV 433


                  ..
gi 1418578913 297 SF 298
Cdd:PRK05846  434 MF 435
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-299 4.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.03  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   8 FLFLTVVSGTVIVISTeNWFIIWVGLELSTLALVPVLCSNFSPRNVEATIKYFLVQALSAALLLNGALI---QAWLTGSW 84
Cdd:PRK06589  121 FFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDF 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  85 SVLEPLNNVSAICLSVALAFKLG---LAPCHFWFPDVLQGLPFFQGLIIATWQKIAPLLILFFFGQLV--ISYL------ 153
Cdd:PRK06589  200 VSGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIfgLSYLqrifae 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 154 ---LIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLI----ITSAYSVKAAILMLIIYLVINTAIFLLFDFLNIST 226
Cdd:PRK06589  280 fnwLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsafILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLK 359

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 227 ----LGHLNTTSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSSIM----IVGSLLSLFFYLRISF 298
Cdd:PRK06589  360 kedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVmlvvIASSILSALYLLKILS 439


                  .
gi 1418578913 299 N 299
Cdd:PRK06589  440 S 440
PRK12646 PRK12646
DUF4040 family protein;
9-291 4.43e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.97  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913   9 LFLTVVSGTVIVISTENWFIIWVGLELSTLALVPVLCSNFSPRNveATIKYFLVQALSAALLLNGALIQAWLTGSWSVLE 88
Cdd:PRK12646  118 LFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQF--GAIQSFMITVFGGLALLVGFIMLYIMTGTNNITE 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  89 PLNNVSAI-----------CLSVALAFKLGLAPCHFWFPDVLQG-LPFFQGLIIATWQKiAPLLILFFFGQL-----VIS 151
Cdd:PRK12646  196 ILGQADHIknhglfipmifMFLLGAFTKSAQFPFHIWLPRAMAApTPVSAYLHSATMVK-AGIFLLFRFTPLlglsnMYI 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 152 YLLIVASLISILVGGWGGLNQTQVRKILAFSSIGNMGWLII-----------TSAYSVKAAILMLI--IYLVINTAIFLL 218
Cdd:PRK12646  275 YIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyaqhQQDAIASIYVFVLFaaLFHLMNHAIFKC 354

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 219 FDFLNISTLGH---------LNTTSQLSPTSIALVILLMLSLGGLPPLTGFILK---FTSLYF---LISNGFIAFSSIMI 283
Cdd:PRK12646  355 ALFMGVGIIDHeagtrdiriLSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKemfLDALTQtgqLSQFSLISMIIIVF 434


                  ....*...
gi 1418578913 284 VGSLLSLF 291
Cdd:PRK12646  435 IGVIASIF 442
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 86-300 9.87e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.75  E-value: 9.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913  86 VLEPLNNVSAICL-----SVALAFKLGLapcHFWFPDVLQGLPFFQGLIIATWQKIAP--LLI----LFFFGQLVISYLL 154
Cdd:MTH00020  202 VSAPSSDITLICLflfigAVGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGvfLLIrsspLFEQAPLALIIVT 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418578913 155 IVASLISILVGGWGgLNQTQVRKILAFSSIGNMGWLII---TSAYSVKAAILM------LIIYLVINTAIFLLFDFLNIS 225
Cdd:MTH00020  279 IVGSLTVFFAATVG-LVQNDLKKVIAYSTCSQLGYMVVacgLSHYSISLFHLMnhaffkALLFLSAGSVIHALSDEQDMR 357

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1418578913 226 TLGHLnttSQLSPTSIALVILLMLSLGGLPPLTGFILKFTSLYFLISNGFIAFSS-IMIVGSLLSLFFYLRISFNT 300
Cdd:MTH00020  358 KMGGL---ISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYwLGCFSALLTAFYSIRLIYLT 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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