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Conserved domains on  [gi|1464312482|ref|YP_009510275|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Vespa affinis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 22-363 4.25e-40

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 144.20  E-value: 4.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  22 MNLNKLFYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMAIFMKSFK--STLNFFIIQSFSSLMLIYLMMMTNg 99
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 100 NSNNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIdqknnttMLYIMLTISLM 179
Cdd:MTH00160   80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI-------NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 180 SSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFKa 259
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKK- 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 260 INFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYKpSLSNLK 339
Cdd:MTH00160  232 IKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNL-KKKKNK 310

                         330       340
                  ....*....|....*....|....
gi 1464312482 340 FNFSSMILISIMVLFFVFFSFYFM 363
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFL 334
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 22-363 4.25e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 144.20  E-value: 4.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  22 MNLNKLFYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMAIFMKSFK--STLNFFIIQSFSSLMLIYLMMMTNg 99
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 100 NSNNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIdqknnttMLYIMLTISLM 179
Cdd:MTH00160   80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI-------NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 180 SSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFKa 259
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKK- 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 260 INFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYKpSLSNLK 339
Cdd:MTH00160  232 IKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNL-KKKKNK 310

                         330       340
                  ....*....|....*....|....
gi 1464312482 340 FNFSSMILISIMVLFFVFFSFYFM 363
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFL 334
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 19-317 8.02e-07

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 50.72  E-value: 8.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  19 PYNMNLNKLFYFMVFIMTLIPLLSIFFT----NFIHLWIMMEMNTIIMISAMAIFMKSFKST---LNFFIIQSFSSLMLI 91
Cdd:TIGR01770  91 LSYLSKEKINKFEFYILLLFALLGIFLLvssnDLLSIYLGLELQSLCFYVLAGLKRKSRFSTeagLKYFILGAFSSGLLL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  92 YLMMMTNGNSNNLPYSTINMIL-----------------MIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQK---F 151
Cdd:TIGR01770 171 FGISLIYGFTGSLNFEDLLLFLsngmlnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiF 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 152 IPMVIFHSFIDQKNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFD----YSMFMIYFATY 227
Cdd:TIGR01770 251 AVFLRLFLYILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGtlegIKAVLFYIFIY 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 228 TMAMIP-----LSLAFNKFNMISIFSLSKTQLLNFKAINFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLL 302
Cdd:TIGR01770 331 ALMSLGafgvlSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410

                         330
                  ....*....|....*
gi 1464312482 303 SMASIFTLIFYMNII 317
Cdd:TIGR01770 411 VLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 86-306 1.62e-05

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.15  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  86 SSLMLIYLMMMTNGNSNNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWI--LILIMSTSQKFIPMVIFHSFIDQ 163
Cdd:pfam00361  61 GTLSFDELSKALTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvsALLAATLVKAGGYGLIRRSLLYL 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 164 KNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMII----IFDYSMFMIYFATYTMAMIPLSLAFN 239
Cdd:pfam00361 141 PSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAG 220

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1464312482 240 KF--------NMISIFSLSKTQLLnfkaINFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMAS 306
Cdd:pfam00361 221 SViyrrvhtrNIRDYGGLAKTMPI----LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 28-318 5.22e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 41.64  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  28 FYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMIsAMAIFMK-SFKST---LNFFIIQSFSSLMLIYLMMMT------ 97
Cdd:COG1007   104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVAFRRdDRRSSeaaLKYFLLGALSSGFLLYGISLLygatgs 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  98 ----------NGNSNNLPYSTINMILMIA-FSLKLGLFPFHFWPPLINQNINWILILIMSTSQK---FIPMVIFHSFIDQ 163
Cdd:COG1007   183 lnlagiaaalAAGGANSPLLLLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFP 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 164 KNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIII----FDYSMFMIYFATYTMAMIPLslafn 239
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNLGA----- 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 240 kFNMISIFSLSKTQLLNFKAIN----------FLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFT 309
Cdd:COG1007   338 -FAVILLLSRKGGEAEEIEDLAglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416


                  ....*....
gi 1464312482 310 LIFYMNIII 318
Cdd:COG1007   417 AYYYLRVVK 425
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 22-363 4.25e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 144.20  E-value: 4.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  22 MNLNKLFYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMAIFMKSFK--STLNFFIIQSFSSLMLIYLMMMTNg 99
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 100 NSNNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIdqknnttMLYIMLTISLM 179
Cdd:MTH00160   80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI-------NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 180 SSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFKa 259
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKK- 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 260 INFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYKpSLSNLK 339
Cdd:MTH00160  232 IKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNL-KKKKNK 310

                         330       340
                  ....*....|....*....|....
gi 1464312482 340 FNFSSMILISIMVLFFVFFSFYFM 363
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFL 334
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 22-350 4.03e-25

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 104.24  E-value: 4.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  22 MNLNKLFYFMVFIMTLIpLLSIFFTNFIHLWIMMEMNT--IIMISAMAIFMKSFKSTLNFFIIQSFSSLMLIYLMMMTNG 99
Cdd:MTH00041    1 MNRNVLIFLITSIILGT-IIVISSNHWFLIWLGLELNTlsIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAW 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 100 NSNNL----PYSTINMILM-IAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIDQKNNttmlYIML 174
Cdd:MTH00041   80 LSGSWsingPLNTLSSIIItLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNS----NILI 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 175 TISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQL 254
Cdd:MTH00041  156 LCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQ 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 255 LNFKAInFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYKPS 334
Cdd:MTH00041  236 LNPISA-FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFS 314

                         330
                  ....*....|....*.
gi 1464312482 335 LSNLKFNFSSMILISI 350
Cdd:MTH00041  315 WRNSGNITVYGVILSI 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 28-351 9.72e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 97.26  E-value: 9.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  28 FYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMAI--FMKSFKSTLNFFIIQSFSSLMLIYLMMMTNGNSNNLP 105
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYkkKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 106 YSTInmiLMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIDqknNTTMLYIMLTISLMSSLMST 185
Cdd:MTH00144   86 SMSL---LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLD---LYWLAYLLCVISVLSALVGS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 186 LMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSktQLLNFKAINFLMS 265
Cdd:MTH00144  160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG--SLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 266 VNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIiikinTFNLMKIKFYKPSLSNLKFNFSSM 345
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSV-----FFSSFLSSSKSKKSNSSKVLNSSI 312


                  ....*.
gi 1464312482 346 ILISIM 351
Cdd:MTH00144  313 ISLNLL 318
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 29-353 2.24e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 84.90  E-value: 2.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  29 YFMVFIMTLIPLLSiffTNFIHLWIMMEMNTIIMISAMAI--FMKSFKSTLNFFIIQSFSSLMLIYLMMMTNGNSN---- 102
Cdd:MTH00105   10 YLTLFLGTMITMIS---SHWLLAWIGLEMNMLAIIPILMKkhNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGqwti 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 103 -NLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHsfidQKNNTTMLYIMLTISLMSS 181
Cdd:MTH00105   87 tKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILY----QISPSINPNLLLTLAILSI 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 182 LMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTqLLNFKAIN 261
Cdd:MTH00105  163 LIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHT-WNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 262 FLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKIN-----TFNLMKIKFYKPSLS 336
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSltmfpSTNNMKMKWQFENTK 321

                         330
                  ....*....|....*..
gi 1464312482 337 NLKFnFSSMILISIMVL 353
Cdd:MTH00105  322 PMTL-LPTLIILSTMLL 337
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 30-316 2.85e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 84.64  E-value: 2.85e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  30 FMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMA--IFMKSFKSTLNFFIIQSFSSLMLIY-----LMMMTNGNSN 102
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIkqHHPRKVEATTKYFIIQATASALLLFggllnAWTSGQWGIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 103 NLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFIDQKNNTtmlyIMLTISLMSSL 182
Cdd:MTH00200   88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSN----ILLLLGLLSVL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 183 MSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNfKAINF 262
Cdd:MTH00200  164 VGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKN-PILSM 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1464312482 263 LMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNI 316
Cdd:MTH00200  243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRL 296
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 31-314 4.50e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 84.10  E-value: 4.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  31 MVFIMTLI--PLLSIFFTNFIHLWIMMEMNT--IIMISAMAIFMKSFKSTLNFFIIQSFSSLMLIYLMMMT-----NGNS 101
Cdd:MTH00112    7 LIITTSLIlgTIITISSNHWLMAWTGLEINTlaIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNawntgQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 102 NNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSfIDQKNNTTmlyIMLTISLMSS 181
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLM-TSNSLNPT---LLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 182 LMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSkTQLLNFKAIN 261
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMM-TSWTKSPTLN 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1464312482 262 FLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYM 314
Cdd:MTH00112  242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 35-318 1.70e-16

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 79.44  E-value: 1.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  35 MTLIPLLSIFFTNFIHLWIMMEMNTIIMISAMAI--FMKSFKSTLNFFIIQSFSSLMLIYLMMMTNGNSNNLPySTINMI 112
Cdd:MTH00011   15 MTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSskMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK-NITALM 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 113 LMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFidqkNNTTMLYIMLTISLMSSLMSTLMNIFET 192
Cdd:MTH00011   94 LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFF----TSHNILPMMTSMAAMSALAGGLGGMNQT 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 193 NLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFkAINFLMSVNLLIVS 272
Cdd:MTH00011  170 QLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQ-TTSMSLFIMLLSLG 248

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1464312482 273 TIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIII 318
Cdd:MTH00011  249 GLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF 294
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 52-353 3.45e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 78.81  E-value: 3.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  52 WIMMEMNTIIMISAMAIFM--KSFKSTLNFFIIQSFSSLMLIYLMMMTNGNS-----NNLPYSTINMILMIAFSLKLGLF 124
Cdd:MTH00070   30 WMGLEINTLAIIPLMTKTHhpRATEAATKYFLTQASASALILFSSTINAWFTgewtiMNMQTPLPTIMLTIALMMKLGIA 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 125 PFHFWPPLINQNINWILILIMSTSQKFIPMVIfhsfIDQKNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMN 204
Cdd:MTH00070  110 PFHFWLPEVLQGLDLTTGLILSTWQKLAPMAL----LIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 205 HLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFkAINFLMSVNLLIVSTIPPFITFLMKI 284
Cdd:MTH00070  186 HLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP-TLTSMMMLTLLSLGGLPPTTGFIPKW 264

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1464312482 285 NLLKILIDNYSTLSSFLLSMASIFTLIFYMN---IIIKINTFNLMKIKFYKPSLSNLKFNFSSMILISIMVL 353
Cdd:MTH00070  265 LILQELTKQNLTTLATLMALSALLSLFFYLRlsyAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILSLMLL 336
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 29-332 4.58e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 78.18  E-value: 4.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  29 YFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTI--IMISAMAIFMKSFKSTLNFFIIQSFSSLMLiyLMMMTNGNSNNLPY 106
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIgfIPLLSQNKSITENEGAMKYFLFQEFGSALL--LMGGSLSFSNLYLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 107 STINMILMIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFhsfidqKNNTTMLYIMLTISLMSSLMSTL 186
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL------AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 187 MNIFETNLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSKTQLLNFKAINFLMsV 266
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLG-L 231

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1464312482 267 NLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYK 332
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLM 297
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 52-316 6.10e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 69.06  E-value: 6.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  52 WIMMEMNTIIMISAMAIFM--KSFKSTLNFFIIQSFSSLMLIYlMMMTNG------NSNNLPYSTINMILMIAFSLKLGL 123
Cdd:MTH00135   30 WMGLEINTLAIIPLMAQHHhpRAVEATTKYFLTQATAAAMILF-ASTTNAwltgqwDIQQMSHPLPTTMITLALALKIGL 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 124 FPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFidQKNNTTMLyimLTISLMSSLMSTLMNIFETNLMKIMTFSSM 203
Cdd:MTH00135  109 APLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI--APTNPTLL---ITLGLTSTLVGGWGGLNQTQLRKILAYSSI 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 204 NHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSkTQLLNFKAINFLMSVNLLIVSTIPPFITFLMK 283
Cdd:MTH00135  184 AHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLA-TSWTKAPALTALTPLILLSLGGLPPLTGFMPK 262

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1464312482 284 INLLKILIDNYSTLSSFLLSMASIFTLIFYMNI 316
Cdd:MTH00135  263 WLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 19-317 8.02e-07

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 50.72  E-value: 8.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  19 PYNMNLNKLFYFMVFIMTLIPLLSIFFT----NFIHLWIMMEMNTIIMISAMAIFMKSFKST---LNFFIIQSFSSLMLI 91
Cdd:TIGR01770  91 LSYLSKEKINKFEFYILLLFALLGIFLLvssnDLLSIYLGLELQSLCFYVLAGLKRKSRFSTeagLKYFILGAFSSGLLL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  92 YLMMMTNGNSNNLPYSTINMIL-----------------MIAFSLKLGLFPFHFWPPLINQNINWILILIMSTSQK---F 151
Cdd:TIGR01770 171 FGISLIYGFTGSLNFEDLLLFLsngmlnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiF 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 152 IPMVIFHSFIDQKNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIIIFD----YSMFMIYFATY 227
Cdd:TIGR01770 251 AVFLRLFLYILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGtlegIKAVLFYIFIY 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 228 TMAMIP-----LSLAFNKFNMISIFSLSKTQLLNFKAINFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLL 302
Cdd:TIGR01770 331 ALMSLGafgvlSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410

                         330
                  ....*....|....*
gi 1464312482 303 SMASIFTLIFYMNII 317
Cdd:TIGR01770 411 VLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 86-306 1.62e-05

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.15  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  86 SSLMLIYLMMMTNGNSNNLPYSTINMILMIAFSLKLGLFPFHFWPPLINQNINWI--LILIMSTSQKFIPMVIFHSFIDQ 163
Cdd:pfam00361  61 GTLSFDELSKALTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvsALLAATLVKAGGYGLIRRSLLYL 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 164 KNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMII----IFDYSMFMIYFATYTMAMIPLSLAFN 239
Cdd:pfam00361 141 PSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAG 220

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1464312482 240 KF--------NMISIFSLSKTQLLnfkaINFLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMAS 306
Cdd:pfam00361 221 SViyrrvhtrNIRDYGGLAKTMPI----LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
71-317 4.46e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 45.20  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  71 KSFKSTLNFFIIQSFSSLMLIYLMMMTNGNSNNLPYSTIN-----------------MILMIAFSLKLGLFPFHFWPPLI 133
Cdd:PRK05777  151 RSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAkaladgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDV 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 134 NQNINWILILIMSTSQK---FIPMVIFHSFIDQKNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMM 210
Cdd:PRK05777  231 YEGAPTPVTAFLATAPKiaaFAVLLRLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 211 MIII----FDYSMFMIYFATYTMAMIPLslafnkFNMISIFS---LSKTQLLNFKAIN-------FLMSVNLLIVSTIPP 276
Cdd:PRK05777  311 VGLAagtaEGYSAVLFYLLAYLFMTLGA------FGVISLLRrkgGEAESISDFAGLSkrspllaAVMTIFMLSLAGIPP 384

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1464312482 277 FITFLMKINLLKILID-NYSTLSSFLLsMASIFTLIFYMNII 317
Cdd:PRK05777  385 TAGFWGKFYVFEAAVEaGLWWLAVIGV-LNSAIGAFYYLRVI 425
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 33-332 3.74e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 41.78  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  33 FIMTLIPLLSIFFTNFIHLWIMMEMNTIIMIsamaIFMKSFKSTLNFFIIQSFSSLMLIYLMMMtngnsnnlpystiNMI 112
Cdd:MTH00091    1 LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLN----KGMGSYSSLFNYFVLQESLGLLFLLFSFG-------------YFQ 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 113 LMIAFsLKLGLFPFHFWPPLINQNINWILILIMSTSQKFIPMVIFHSFidqknnttMLYIMLTISLMSSLMSTLMNIFET 192
Cdd:MTH00091   64 FLILM-MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQF--------FSKNFFFLLLFGLLICFFQMFLLK 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 193 NLMKIMTFSSMNHLSWMMMIIIFDYSMFMIYFATYTMAMIPLSLAFNKFNMISIFSLSktqllnfkainflmsvNLLIVS 272
Cdd:MTH00091  135 SYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWE----------------TLLVFM 198

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 273 TIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFTLIFYMNIIIKINTFNLMKIKFYK 332
Cdd:MTH00091  199 NLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNK 258
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 28-318 5.22e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 41.64  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  28 FYFMVFIMTLIPLLSIFFTNFIHLWIMMEMNTIIMIsAMAIFMK-SFKST---LNFFIIQSFSSLMLIYLMMMT------ 97
Cdd:COG1007   104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVAFRRdDRRSSeaaLKYFLLGALSSGFLLYGISLLygatgs 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482  98 ----------NGNSNNLPYSTINMILMIA-FSLKLGLFPFHFWPPLINQNINWILILIMSTSQK---FIPMVIFHSFIDQ 163
Cdd:COG1007   183 lnlagiaaalAAGGANSPLLLLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFP 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 164 KNNTTMLYIMLTISLMSSLMSTLMNIFETNLMKIMTFSSMNHLSWMMMIII----FDYSMFMIYFATYTMAMIPLslafn 239
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNLGA----- 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464312482 240 kFNMISIFSLSKTQLLNFKAIN----------FLMSVNLLIVSTIPPFITFLMKINLLKILIDNYSTLSSFLLSMASIFT 309
Cdd:COG1007   338 -FAVILLLSRKGGEAEEIEDLAglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416


                  ....*....
gi 1464312482 310 LIFYMNIII 318
Cdd:COG1007   417 AYYYLRVVK 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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