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Conserved domains on  [gi|1693304125|ref|YP_009663047|]
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NdhA (chloroplast) [Ipomoea carnea]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10000030)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-357 0e+00

NADH dehydrogenase subunit 1


:

Pssm-ID: 214341  Cd Length: 363  Bit Score: 664.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125   1 MIIDTTQIQAIHSFSGLESVKvkEVYGIIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLK--EVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  81 GIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSF 160
Cdd:CHL00032   79 GTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSF 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 161 LGGLRAAAQSISYEIPLALCVLSISLrVSNSSSTVDIVEAQSKYGFWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAE 240
Cdd:CHL00032  159 LGGLRAAAQSISYEIPLTLCVLSISL-LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 241 EELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIPYIFVPELfdiFDITKRAKVFGTIVSIVITLAKT 320
Cdd:CHL00032  238 EELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPEL---FEINKTGGVFGTTIGIFITLAKT 314
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1693304125 321 FSFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGN 357
Cdd:CHL00032  315 YLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGN 351
 
Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-357 0e+00

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 664.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125   1 MIIDTTQIQAIHSFSGLESVKvkEVYGIIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLK--EVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  81 GIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSF 160
Cdd:CHL00032   79 GTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSF 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 161 LGGLRAAAQSISYEIPLALCVLSISLrVSNSSSTVDIVEAQSKYGFWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAE 240
Cdd:CHL00032  159 LGGLRAAAQSISYEIPLTLCVLSISL-LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 241 EELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIPYIFVPELfdiFDITKRAKVFGTIVSIVITLAKT 320
Cdd:CHL00032  238 EELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPEL---FEINKTGGVFGTTIGIFITLAKT 314
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1693304125 321 FSFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGN 357
Cdd:CHL00032  315 YLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGN 351
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
28-357 5.17e-121

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 352.51  E-value: 5.17e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  28 IIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLr 187
Cdd:COG1005    88 FIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL- 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 188 VSNSSSTVDIVEAQSKygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 267
Cdd:COG1005   167 LAGSLNLSEIVEAQAG---GLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 268 LISSLFVTVLYLGGWNLsiPYIFVPelfdifditkrakvFGTIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGW 347
Cdd:COG1005   244 FLVSALATTLFLGGWLG--PFPILP--------------LGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGW 307
                         330
                  ....*....|
gi 1693304125 348 KFLLPISLGN 357
Cdd:COG1005   308 KVLLPLSLVN 317
NADHdh pfam00146
NADH dehydrogenase;
35-357 1.77e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.82  E-value: 1.77e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLS 114
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 115 YLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLrVSNSSST 194
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL-LAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 195 VDIVEAQSkygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFV 274
Cdd:pfam00146 161 SEIVEAQA----GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 275 TVLYLGGWNLSIPyifvpelfdifditkrakvfgtIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGWKFLLPIS 354
Cdd:pfam00146 237 VTLFLGGWLGPFP----------------------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLS 294

                  ...
gi 1693304125 355 LGN 357
Cdd:pfam00146 295 LAN 297
 
Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-357 0e+00

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 664.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125   1 MIIDTTQIQAIHSFSGLESVKvkEVYGIIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLK--EVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALAD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  81 GIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSF 160
Cdd:CHL00032   79 GTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSF 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 161 LGGLRAAAQSISYEIPLALCVLSISLrVSNSSSTVDIVEAQSKYGFWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAE 240
Cdd:CHL00032  159 LGGLRAAAQSISYEIPLTLCVLSISL-LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 241 EELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIPYIFVPELfdiFDITKRAKVFGTIVSIVITLAKT 320
Cdd:CHL00032  238 EELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPEL---FEINKTGGVFGTTIGIFITLAKT 314
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1693304125 321 FSFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGN 357
Cdd:CHL00032  315 YLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGN 351
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
28-357 5.17e-121

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 352.51  E-value: 5.17e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  28 IIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLr 187
Cdd:COG1005    88 FIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL- 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 188 VSNSSSTVDIVEAQSKygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 267
Cdd:COG1005   167 LAGSLNLSEIVEAQAG---GLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 268 LISSLFVTVLYLGGWNLsiPYIFVPelfdifditkrakvFGTIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGW 347
Cdd:COG1005   244 FLVSALATTLFLGGWLG--PFPILP--------------LGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGW 307
                         330
                  ....*....|
gi 1693304125 348 KFLLPISLGN 357
Cdd:COG1005   308 KVLLPLSLVN 317
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
28-357 2.82e-117

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 342.94  E-value: 2.82e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  28 IIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLr 187
Cdd:PRK06076   89 FIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL- 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 188 VSNSSSTVDIVEAQSkygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 267
Cdd:PRK06076  168 LAGSLNLSDIVEAQF----LSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINM 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 268 LISSLFVTVLYLGGWNLSIPyifvpelfdifditkrakVFGTIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGW 347
Cdd:PRK06076  244 ILVSALITTLFLGGWLPPFP------------------LGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGW 305
                         330
                  ....*....|
gi 1693304125 348 KFLLPISLGN 357
Cdd:PRK06076  306 KVLLPLSLVN 315
NADHdh pfam00146
NADH dehydrogenase;
35-357 1.77e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.82  E-value: 1.77e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLS 114
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 115 YLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLrVSNSSST 194
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL-LAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 195 VDIVEAQSkygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFV 274
Cdd:pfam00146 161 SEIVEAQA----GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 275 TVLYLGGWNLSIPyifvpelfdifditkrakvfgtIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGWKFLLPIS 354
Cdd:pfam00146 237 VTLFLGGWLGPFP----------------------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLS 294

                  ...
gi 1693304125 355 LGN 357
Cdd:pfam00146 295 LAN 297
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
27-356 8.51e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 190.71  E-value: 8.51e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  27 GIIWIlaPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSI 106
Cdd:MTH00054    2 GIIII--KILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPIL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 107 AVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
Cdd:MTH00054   80 SLTLAFIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 187 RVSnSSSTVDIVEAQSKYgfwgWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLN 266
Cdd:MTH00054  160 CVG-SLNLTEIVLAQKNI----WFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCH 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 267 LLISSLFVTVLYLGGWnlsIPYIFVPELFDIFditkraKVFGTIVSIVItlaktfsFLFISIatRWTLPRLRMDQLLNLG 346
Cdd:MTH00054  235 IILMSTFGVILFLGGW---LVISGPTSYFSNF------VWFGIKIALII-------FLFIWI--RASYPRIRYDQLMALL 296
                         330
                  ....*....|
gi 1693304125 347 WKFLLPISLG 356
Cdd:MTH00054  297 WKSYLPLSLA 306
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
25-356 1.03e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 188.02  E-value: 1.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  25 VYGIIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGP 104
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 105 SIAVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSI 184
Cdd:MTH00216   82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 185 SLRVSnSSSTVDIVEAQSKYGFWGWHLWrqpIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 264
Cdd:MTH00216  162 LLCVG-SLSITEIVLAQNNGIWFFFPLF---PVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEY 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 265 LNLLISSLFVTVLYLGGWNLSIPYIFVpelfdifditkRAKVFGTIVSIVItlaktfsFLFISIatRWTLPRLRMDQLLN 344
Cdd:MTH00216  238 AHIILMSCLTTILFLGGWLSPIKYFKG-----------GAGWFGLKVVFII-------FLFIWV--RASFPRIRYDQLMA 297
                         330
                  ....*....|..
gi 1693304125 345 LGWKFLLPISLG 356
Cdd:MTH00216  298 LLWKSYLPLSLG 309
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
35-355 4.95e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 183.56  E-value: 4.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIV----------WLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGP 104
Cdd:MTH00111    1 MPTLLLNLINPLLYIIpiliavafltLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 105 SIAVISVFLSYLVIPFGYKLvlADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSI 184
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPL--ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 185 SLRVSNSS-STVDIVEAQSKYGFWGWHL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY 260
Cdd:MTH00111  159 ILLSGGYTlQTLATTQEPLWLIFSSWPLammW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 261 VASYLNLLISSLFVTVLYLGGWNLSIPyifvPELFDIFDITKrakvfgtivsiviTLAKTFSFLFIsiatRWTLPRLRMD 340
Cdd:MTH00111  230 LAEYANILLMNTLTTILFLNPSTLNLP----PELFTINLMTK-------------TLLLTSGFLWI----RASYPRFRYD 288
                         330
                  ....*....|....*
gi 1693304125 341 QLLNLGWKFLLPISL 355
Cdd:MTH00111  289 QLMHLLWKQFLPLTL 303
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
25-356 6.29e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 181.37  E-value: 6.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  25 VYGIIWILAPIFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGP 104
Cdd:MTH00029    3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 105 SIAVISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSI 184
Cdd:MTH00029   83 IISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 185 SLRVSnSSSTVDIVEAQSKYgfwgWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 264
Cdd:MTH00029  163 ILCVG-SLNISEIVISQRSV----WLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEY 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 265 LNLLISSLFVTVLYLGGWnLSiPYIFVPELFDIFDITKRAKVFGtivSIVITLAKTFSFLFISIATRWTLPRLRMDQLLN 344
Cdd:MTH00029  238 SNIILMSCMMTIFFLGGW-LS-PLDGIPTPPEAFSIFEQIASSK---SSFWFFTKSSIFILFFIWSRASFPRIRYDQLMK 312
                         330
                  ....*....|..
gi 1693304125 345 LGWKFLLPISLG 356
Cdd:MTH00029  313 LLWKTYLPLSLG 324
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
28-355 3.94e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 175.58  E-value: 3.94e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  28 IIWILAPIFTIVLGitMGLLVIVwlEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:MTH00104    3 MINILLLIIPILLA--VAFLTLV--ERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLVlaDLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL- 186
Cdd:MTH00104   79 LTLALTMWIPLPMPYPLI--NMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLm 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 187 RVSNSSSTVDIVEAQSKYGFWGWHL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS 263
Cdd:MTH00104  157 NGSFTLSTLITTQEHLWLIFPSWPLammW---------FISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAE 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 264 YLNLLISSLFVTVLYLGGWNlsipYIFVPELFDIFDITKrakvfgtivsiviTLAKTFSFLFIsiatRWTLPRLRMDQLL 343
Cdd:MTH00104  228 YANIIMMNALTTILFLGAFH----NPYMPELYTTNFTIK-------------TLLLTILFLWI----RASYPRFRYDQLM 286
                         330
                  ....*....|..
gi 1693304125 344 NLGWKFLLPISL 355
Cdd:MTH00104  287 HLLWKNFLPLTL 298
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
25-356 4.75e-52

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 175.55  E-value: 4.75e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  25 VYGIIWILAPIFTIVlGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGP 104
Cdd:MTH00040    1 MSVILFLINLLSFIV-PVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 105 SIAVISVFLSYLVIPFGYKLVLADLSigVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSI 184
Cdd:MTH00040   80 VLFLFLALLLWSLIPVPTPTLNVNLS--LLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSL 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 185 SLrVSNSSSTVDIVEAQSkygfWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 264
Cdd:MTH00040  158 VI-FSGSFSLSSISNSQN----GSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEY 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 265 LNLLISSLFVTVLYLGGwNLSIPYIFvpelfdifditkrakVFGTIVSIVITLAKTFSFLFIsiatRWTLPRLRMDQLLN 344
Cdd:MTH00040  233 ANIIFMNLLSVILFLGG-GSPFNEIF---------------PINIIIVGIKTTFLVFLFLWV----RASYPRFRYDQLMF 292
                         330
                  ....*....|..
gi 1693304125 345 LGWKFLLPISLG 356
Cdd:MTH00040  293 LTWKNYLPLSIG 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
52-356 6.45e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 174.67  E-value: 6.45e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  52 LEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLSYLVIPFGYKLVLadLSI 131
Cdd:MTH00143   24 LERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSY--FGW 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 132 GVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSiSLRVSNSSSTVDIveaqSKYGFWGWHL 211
Cdd:MTH00143  102 GLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLF-PLFLSGSFSFIEI----SESQFSVWLG 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 212 WRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIpyifv 291
Cdd:MTH00143  177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLF----- 251
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1693304125 292 pelfdifditkrakVFGTIVSIVITLAktFSFLFISIatRWTLPRLRMDQLLNLGWKFLLPISLG 356
Cdd:MTH00143  252 --------------LLGGVVFMFKVLF--FAFLFIWV--RASYPRFRYDLLMMLCWKSFLPFSLS 298
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
52-355 7.17e-51

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 172.50  E-value: 7.17e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  52 LEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVIsvfLSYLV-IPFGYKLVLADLS 130
Cdd:MTH00071   28 VERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT---LALIIwTPLPMPNNLSNLN 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 131 IGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVSNSS-STVDIVEAQSKYGFWGW 209
Cdd:MTH00071  105 LGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSlMNFNTTQEFMWLIIPAW 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 210 HL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGgwnlSI 286
Cdd:MTH00071  185 PMaamW---------FISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLG----ST 251
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1693304125 287 PYIFVPELFDIFDITKrakvfgtivsivitlAKTFSFLFISIatRWTLPRLRMDQLLNLGWKFLLPISL 355
Cdd:MTH00071  252 YNHLQPELSTMNLMIK---------------ASILSMLFLWV--RASYPRFRYDQLMHLVWKNFLPITL 303
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
30-356 7.43e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 169.71  E-value: 7.43e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  30 WILAPIFTIVLGITMGLLV--IVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVafLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLVlaDLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLR 187
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLI--NLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIIL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 188 V-SNSSSTVDIVEAQSKYGFWGWHLwrqpigFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLN 266
Cdd:MTH00218  159 TgGFSLEGFNLTQETIWLLIPEWPL------ALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMN 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 267 LLISSLFVTVLYLGGWNLSIPYIFvpelfdifditkrakvfgtivsivITLAKTFSFLFIsiatRWTLPRLRMDQLLNLG 346
Cdd:MTH00218  233 ILFMNTLSVILFLGTSLTTINLML------------------------KATLLVFLFLWV----RASLPRFRYDQLMHLA 284
                         330
                  ....*....|
gi 1693304125 347 WKFLLPISLG 356
Cdd:MTH00218  285 WKNFLPLSLA 294
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
38-355 1.87e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 165.71  E-value: 1.87e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  38 IVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLSYLV 117
Cdd:MTH00193   11 LIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 118 IPFGYKLVlaDLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLrVSNSSSTVDI 197
Cdd:MTH00193   91 YPYLFNLI--SFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIF-LIGSFNLLDF 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 198 VEAQSKygfwGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVL 277
Cdd:MTH00193  168 MNYQKY----IWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLM 243
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1693304125 278 YLGGWNLSIPYIFvpelfdifditkrakvfgtivsivitlaKTFSFLFISIATRWTLPRLRMDQLLNLGWKFLLPISL 355
Cdd:MTH00193  244 FLGGDLLSLLFYL----------------------------KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 293
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
35-356 3.15e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 165.21  E-value: 3.15e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLS 114
Cdd:MTH00225    7 FLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 115 YLVIPFGYKLVlaDLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSIsLRVSNSSST 194
Cdd:MTH00225   87 WSLYPSMFSIY--SFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSI-VFLVLTYNL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 195 VDIVEAQSKYgfwgWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFV 274
Cdd:MTH00225  164 FDFSYNQKYF----WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLT 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 275 TVLYLGGWNLSIPYIFVPELFdifditkrakvfgtivsivitlakTFSFLFISIatRWTLPRLRMDQLLNLGWKFLLPIS 354
Cdd:MTH00225  240 SILFFGGFFVTIDLFLILKIM------------------------LLAFWFIWV--RGVLPRMRYDKLMSLTWKSFLPLS 293

                  ..
gi 1693304125 355 LG 356
Cdd:MTH00225  294 LA 295
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
28-355 1.10e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 161.70  E-value: 1.10e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  28 IIWILAPIFTIVLgITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIA 107
Cdd:MTH00134    6 ITHIINPLAYIVP-VLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 108 VISVFLSYLVIPFGYKLvlADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLR 187
Cdd:MTH00134   85 LTLALTLWAPMPMPYPV--TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 188 VSNSS-STVDIVEAQSKYGFWGWHL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS 263
Cdd:MTH00134  163 TGGFTlQTFNTAQESIWLLLPAWPLaamW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 264 YLNLLISSLFVTVLYLGGwnLSIPYIfvPELFDIFDITKRAkvfgtIVSIVitlaktfsFLFIsiatRWTLPRLRMDQLL 343
Cdd:MTH00134  234 YANILLMNTLSAILFLGA--SHIPTL--PELTTINLMTKAA-----LLSVV--------FLWV----RASYPRFRYDQLM 292
                         330
                  ....*....|..
gi 1693304125 344 NLGWKFLLPISL 355
Cdd:MTH00134  293 HLVWKNFLPLTL 304
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
27-356 8.07e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 158.75  E-value: 8.07e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  27 GIIWILAPIFTIVLGITMgllvIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSI 106
Cdd:MTH00195    4 SVIHFLIQIVPVLLAVAF----FTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 107 AVISVFLSYLVIPFGYKLVlaDLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
Cdd:MTH00195   80 ALALALILWVPIPSPFGFS--SINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPIC 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 187 RVSNSSSTVdIVEAQSKygFWGWHLWrqPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLN 266
Cdd:MTH00195  158 LAGSFDFTI-MVISQGF--SWVILLC--PPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSN 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 267 LLISSLFVTVLYLGGwnlsipyifvpelfdifditkrakvfgtiVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLG 346
Cdd:MTH00195  233 IIFMSVLTTILFLGG-----------------------------GGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLT 283
                         330
                  ....*....|
gi 1693304125 347 WKFLLPISLG 356
Cdd:MTH00195  284 WKCYLPLILS 293
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
35-356 5.68e-44

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 154.17  E-value: 5.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVW---LEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISV 111
Cdd:MTH00010    6 FISILLSYVMALLAMAFytlLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILA 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 112 FLSYLVIPFGYKLVLadLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVSNS 191
Cdd:MTH00010   86 LLLWSLYPHKHPSFF--LKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTF 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 192 SSTVDIVEAQSkygfwgWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISS 271
Cdd:MTH00010  164 SFSKIIMSQYS------WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMS 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 272 LFVTVLYLGgwnlSIPYIFVPELfdifditkrakvfgtivsIVITLAKTFSFLFISIatRWTLPRLRMDQLLNLGWKFLL 351
Cdd:MTH00010  238 LFTSVFFTS----FIPSIFISDL------------------MLILKTVFLAFLFIWI--RATFPRMRYDRLMNLTWKSFL 293

                  ....*
gi 1693304125 352 PISLG 356
Cdd:MTH00010  294 PMSLT 298
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
35-355 1.81e-32

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 123.09  E-value: 1.81e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLLKESLLPSRGDTRLFRIGPSIAVISVFLS 114
Cdd:MTH00090    2 LLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 115 YLVIPFGYKLVLADLSIGVFFWIAASSIAPVglLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVSnssst 194
Cdd:MTH00090   82 WFVLPYFFDFLSFEYSLLFFLCLIGFSVYTT--LISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNN----- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 195 vdiveaqsKYGFWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFV 274
Cdd:MTH00090  155 --------SFSFVSSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLT 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 275 TVLYLggwNLSIPYIFVpelfdifditkrakvfgtivsivitlaktfsFLFISIATRWTLPRLRMDQLLNLGWKFLLPIS 354
Cdd:MTH00090  227 SVLFF---KFSFLMLFL-------------------------------IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLS 272

                  .
gi 1693304125 355 L 355
Cdd:MTH00090  273 L 273
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
35-348 7.32e-31

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 119.13  E-value: 7.32e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  35 IFTIVLGITMGLLVIVW------LEREISAGIQQRIGPeyagplGILQALADGIKLLLKESLLPsRGDTRLFRIGPSIAV 108
Cdd:COG0650     1 MMLILLALLQLLLALLLaplllgIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 109 ISVFLSYLVIPFGYKLVLADLSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLrV 188
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALAL-L 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 189 SNSSSTVDIVEAQSKYGFWGWHLWRqPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 268
Cdd:COG0650   153 AGSTSLSDIVAYQAAHGPLLLSPSL-LLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLF 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 269 I-SSLFVTVLYLGGWNLSIpyifvpelfdifditkrakvfgtIVSIVITLAKTFSFLFISIATRWTLPRLRMDQLLNLGW 347
Cdd:COG0650   232 VlLSLFVNLFLPWGIALTL-----------------------LLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLW 288

                  .
gi 1693304125 348 K 348
Cdd:COG0650   289 T 289
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
39-355 3.16e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 103.47  E-value: 3.16e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125  39 VLGITMGLLVIVWL---EREISAGIQQRIGPEYAGPLGILQALADGIKLLLK--ESLLPSRGDTRLFRIgpsIAVISVFL 113
Cdd:MTH00058    8 LEGLLIILLLVAFFilgERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKfkVYGFQSRSWFSLFGV---FLLVLLVV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 114 SYLVIPFGYKLVLADlSIGVFFWIAASSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLaLCVLSISLRVSNSSS 193
Cdd:MTH00058   85 FYCFIYGSYYSGSYS-SLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACF-MCIVIFCGLCYGSYS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 194 TVDIveaqskYGFWGWHLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLF 273
Cdd:MTH00058  163 LVDF------YYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1693304125 274 VTVLYLGGWNLSIPYIFvpelfdifditkrakvfgtivsivitlaktfsFLFISIATRWTLPRLRMDQLLNLGWKFLLPI 353
Cdd:MTH00058  237 GSVLFFGGGFVSIMLLF--------------------------------HLLFFMWARATLPRVRYDYFVNFFWEYCLVL 284

                  ..
gi 1693304125 354 SL 355
Cdd:MTH00058  285 LI 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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