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Conserved domains on  [gi|1824664451|ref|YP_009738994|]
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ATP synthase F0 subunit 6 (mitochondrion) [Koreoleptoxis nodifila]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009610)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-231 1.22e-77

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214448  Cd Length: 231  Bit Score: 233.22  E-value: 1.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYGLVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00173    1 MMVDLFSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00173   81 FLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1824664451 161 VRLMANMSAGHIVLTLIGNYLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHPH 231
Cdd:MTH00173  161 VRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEHPV 231
 
Name Accession Description Interval E-value
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-231 1.22e-77

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 233.22  E-value: 1.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYGLVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00173    1 MMVDLFSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00173   81 FLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1824664451 161 VRLMANMSAGHIVLTLIGNYLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHPH 231
Cdd:MTH00173  161 VRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEHPV 231
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-230 5.42e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 160.06  E-value: 5.42e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   5 IFSSFDDH--NQVFMSMYGLVWALSLCLVL-LFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFML 81
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLiSSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  82 LIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLSV 161
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824664451 162 RLMANMSAGHIVLTLIGNYLTASvfcFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHP 230
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSL---MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 70-225 5.49e-35

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 121.74  E-value: 5.49e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  70 GFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIET 149
Cdd:cd00310     3 KYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIEL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824664451 150 VSIMARPITLSVRLMANMSAGHIVLTLIGNYltasVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:cd00310    83 ISELIRPLSLSVRLFANMFAGHLLLALLSGL----VPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVY 154
ATP-synt_A pfam00119
ATP synthase A chain;
71-225 2.96e-22

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 90.63  E-value: 2.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  71 FMSVISGLFMLLIFMNLAGLI---PYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSST-IAALLPMGAPAALNPFLVL 146
Cdd:pfam00119  57 FFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLP 136

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824664451 147 IETVSIMARPITLSVRLMANMSAGHIVLTLIGNyLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:pfam00119 137 IEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG-LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVY 214
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 46-225 3.08e-20

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 85.12  E-value: 3.08e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  46 MEIIFLFketISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPS 125
Cdd:COG0356    35 VEMLVEF---VRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 126 STIAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIgnyltaSVFCFSSFSMFILLMTQILYTV 205
Cdd:COG0356   112 GGYLKHLFFPPFPWLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL------AGLAPFLLLGVLSLLLPVAWTA 185

                         170       180
                  ....*....|....*....|
gi 1824664451 206 FEFGISMIQAYIFCLLITLY 225
Cdd:COG0356   186 FELLVGFLQAYIFTMLTAVY 205
 
Name Accession Description Interval E-value
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-231 1.22e-77

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 233.22  E-value: 1.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYGLVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00173    1 MMVDLFSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00173   81 FLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1824664451 161 VRLMANMSAGHIVLTLIGNYLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHPH 231
Cdd:MTH00173  161 VRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEHPV 231
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-230 5.22e-73

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 221.53  E-value: 5.22e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYG--LVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGL 78
Cdd:MTH00005    1 MLTDIFSSFDPATNSLFNNLSstAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  79 FMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPIT 158
Cdd:MTH00005   81 FTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPIT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1824664451 159 LSVRLMANMSAGHIVLTLIGNYLTASVFcFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHP 230
Cdd:MTH00005  161 LSFRLAANMSAGHIVLSLIGIYAASALF-SSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-230 2.59e-51

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 165.98  E-value: 2.59e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYGLVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00176   81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 161 VRLMANMSAGHIVLTLIGNyLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHP 230
Cdd:MTH00176  161 VRLAANLSAGHLLLGLLGA-AMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-228 2.01e-49

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 161.10  E-value: 2.01e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDDHNQVFMSMYglvWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00157    1 MMTNLFSIFDPSTSFNLSLN---WLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00157   78 FILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLA 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824664451 161 VRLMANMSAGHIVLTLIGNYLTASvfcfSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00157  158 VRLAANMIAGHLLLTLLGNTGPSL----SSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-230 5.42e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 160.06  E-value: 5.42e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   5 IFSSFDDH--NQVFMSMYGLVWALSLCLVL-LFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFML 81
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLiSSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  82 LIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLSV 161
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824664451 162 RLMANMSAGHIVLTLIGNYLTASvfcFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDEHP 230
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSL---MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-228 3.55e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 126.99  E-value: 3.55e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451   1 MLVDIFSSFDdhNQVFMSMYGLVWALSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFM 80
Cdd:MTH00179    1 MMLSMFDQFE--SPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLML 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  81 LLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLS 160
Cdd:MTH00179   79 FLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALG 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824664451 161 VRLMANMSAGHIVLTLIGNYLTASVFCFSSFSMFILLMTqILYTVFEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00179  159 VRLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVL-FLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 70-225 5.49e-35

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 121.74  E-value: 5.49e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  70 GFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIET 149
Cdd:cd00310     3 KYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIEL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824664451 150 VSIMARPITLSVRLMANMSAGHIVLTLIGNYltasVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:cd00310    83 ISELIRPLSLSVRLFANMFAGHLLLALLSGL----VPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVY 154
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 77-228 1.57e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 123.01  E-value: 1.57e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  77 GLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARP 156
Cdd:MTH00120   75 SLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRP 154

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824664451 157 ITLSVRLMANMSAGHIVLTLIGnylTASVFCFSSFSMFILLMTQILY--TVFEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00120  155 LALGVRLTANLTAGHLLIQLIS---TATLNLLPTMPTLSLLTLIILLllTILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 66-228 1.12e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 115.36  E-value: 1.12e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  66 INLGG--FMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPF 143
Cdd:MTH00132   62 LNVGGhkWALLLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 144 LVLIETVSIMARPITLSVRLMANMSAGHIVLTLIGnylTASVFCFSSFSMFILLMTQILY--TVFEFGISMIQAYIFCLL 221
Cdd:MTH00132  142 LIIIETISLFIRPLALGVRLTANLTAGHLLIQLIA---TAAFVLLPLMPTVAILTATLLFllTLLEVAVAMIQAYVFVLL 218


                  ....*..
gi 1824664451 222 ITLYSDE 228
Cdd:MTH00132  219 LSLYLQE 225
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 26-225 6.36e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 111.25  E-value: 6.36e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  26 LSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSF 105
Cdd:MTH00175   37 LAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITF 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 106 SLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIG----NYL 181
Cdd:MTH00175  117 GLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSgfafNML 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1824664451 182 TASVFCFSSFSMFILlmtqILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:MTH00175  197 SNGLIILSLFPMLIM----IFITLLEMAVAVIQAYVFCLLTTIY 236
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 26-225 2.21e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 109.75  E-value: 2.21e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  26 LSLCLVLLFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSF 105
Cdd:MTH00172   26 LVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLFPYVFTPTTHIVVTL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 106 SLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIGNYlTASV 185
Cdd:MTH00172  106 GLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGF-GFNM 184

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1824664451 186 FCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:MTH00172  185 LCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIY 224
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 39-228 2.94e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 109.29  E-value: 2.94e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  39 WVTNpRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIIS 118
Cdd:MTH00073   38 WLNN-RLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLI 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 119 GAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIGnylTASVFCFSSFSMFILL- 197
Cdd:MTH00073  117 GLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLIS---TATLVLLPLMPTVSILt 193

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1824664451 198 -MTQILYTVFEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00073  194 mIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 78-225 9.33e-29

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 107.73  E-value: 9.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  78 LFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIETVSIMARPI 157
Cdd:MTH00101   75 LILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPM 154

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824664451 158 TLSVRLMANMSAGHIVLTLIGNyLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:MTH00101  155 ALAVRLTANITAGHLLIHLIGG-ATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 48-228 2.21e-28

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 106.98  E-value: 2.21e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  48 IIFLFKETISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSST 127
Cdd:MTH00035   49 IWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSR 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 128 IAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIGN--YLTASVFCFSSFSMFILLMTQILytv 205
Cdd:MTH00035  129 LSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTaiWELSNSPLISIITLIIFFLLFIL--- 205

                         170       180
                  ....*....|....*....|...
gi 1824664451 206 fEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00035  206 -EIGVACIQAYVFTALVHFYLEQ 227
ATP-synt_A pfam00119
ATP synthase A chain;
71-225 2.96e-22

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 90.63  E-value: 2.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  71 FMSVISGLFMLLIFMNLAGLI---PYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSST-IAALLPMGAPAALNPFLVL 146
Cdd:pfam00119  57 FFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLP 136

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824664451 147 IETVSIMARPITLSVRLMANMSAGHIVLTLIGNyLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:pfam00119 137 IEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG-LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVY 214
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 46-225 3.08e-20

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 85.12  E-value: 3.08e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  46 MEIIFLFketISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPS 125
Cdd:COG0356    35 VEMLVEF---VRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 126 STIAALLPMGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIgnyltaSVFCFSSFSMFILLMTQILYTV 205
Cdd:COG0356   112 GGYLKHLFFPPFPWLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL------AGLAPFLLLGVLSLLLPVAWTA 185

                         170       180
                  ....*....|....*....|
gi 1824664451 206 FEFGISMIQAYIFCLLITLY 225
Cdd:COG0356   186 FELLVGFLQAYIFTMLTAVY 205
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 69-225 1.46e-18

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 81.52  E-value: 1.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  69 GGFMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIE 148
Cdd:MTH00174   88 GNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIE 167

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1824664451 149 TVSIMARPITLSVRLMANMSAGHIVLTLIGNYLTASVFCFSSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:MTH00174  168 TLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVY 244
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 78-225 2.61e-15

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 72.13  E-value: 2.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  78 LFMLLIFMNLAGLIP-YVFSSTSHLAVSFSLGFPLWLSLIISGAV------FLPSSTIAallpmgapaaLNPFLVLIETV 150
Cdd:PRK05815   79 LFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKkkglggYLKEFYLQ----------PHPLLLPIEII 148

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824664451 151 SIMARPITLSVRLMANMSAGHIVLTLIGNYLTASVfcfssFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLY 225
Cdd:PRK05815  149 SEFSRPISLSLRLFGNMLAGELILALIALLGGAGL-----LLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 71-225 4.78e-11

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 61.30  E-value: 4.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  71 FMSVISGLFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFplwLSLIISGAVFLPSSTIA---ALLPMGAPAALNPFLVLI 147
Cdd:PRK13419  170 FLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAV---FTFFITQYAAIKAHGIKgylAHLTGGTHWSLWIIMIPI 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 148 ETVSIMARPITLSVRLMANMSAGHIV-LTLIG------NYLTAsVFCFSSFSMFILLMtqilytvfEFGISMIQAYIFCL 220
Cdd:PRK13419  247 EFIGLFTKPFALTVRLFANMTAGHIViLSLIFisfilkSYIVA-VAVSVPFAIFIYLL--------ELFVAFLQAYIFTM 317


                  ....*
gi 1824664451 221 LITLY 225
Cdd:PRK13419  318 LSALF 322
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 98-225 5.82e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 49.50  E-value: 5.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  98 TSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLPMGAPAALNPFLVLIE-TVSIMARPITLSVRLMANMSAGH-IVLT 175
Cdd:PRK13417  219 TGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHvIILA 298

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1824664451 176 LIGnyltasvFCFSSFSMFILLMTQI---LYTVFEFGISMIQAYIFCLLITLY 225
Cdd:PRK13417  299 LMG-------FIFQFQSWGIVPVSVIgsgLIYVLEIFVAFLQAYIFVLLTSLF 344
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 55-206 2.72e-06

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 46.03  E-value: 2.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  55 TISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGL-IPYVFSSTSHLAVSFSLGFPLWLSLIISGAVFLPSSTIAALLP 133
Cdd:MTH00050    5 DFSSLFSLIYKLILGGSVSYYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVP 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824664451 134 MGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAGHIVLTLIGNyltasvFCFSSFSMFILLMTQILYTVF 206
Cdd:MTH00050   85 VGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCFGGVALGN------LCFISYWWFLVLFFLFFYEVF 151
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 78-228 4.78e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 45.74  E-value: 4.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  78 LFMLLIFMNLAGLIPYVFSSTSHLAVSFSLGFPLWLSLIISgaVFLPSSTIAALLPMGAPAALNPF-LVLIETVSIMARP 156
Cdd:MTH00087   58 TFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLS--FLSKSEKFSVYLSKGSDSFLKTFsMLFVEIVSELSRP 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1824664451 157 ITLSVRLMANMSAGHIVLTLIgnyltasvfcfsSFSMFILLMTQILYTVFEFGISMIQAYIFCLLITLYSDE 228
Cdd:MTH00087  136 LALTLRLTVNLMVGHLISSLL------------NFLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 24-221 7.59e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 39.29  E-value: 7.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451  24 WALSLCLVL---LFGVGFWVTNPRWMEIIFLFKETISSQVFRSFGINLGGFMSVISGLFMLLIFMNLAGLIPYVFSSTSH 100
Cdd:PRK13421   27 WAIMAVLAAgsaLATRRLSLAPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664451 101 LAVSFSLGFPLWLSLIISGavfLPSSTIAALLpmGAPAALNPFLVLIETVSIMARPITLSVRLMANMSAG----HIVLTL 176
Cdd:PRK13421  107 LETDAALALIVFLATIYYG---VRARGVRGYL--ATFAEPTWVMIPLNLVEQLTRTFSLIVRLFGNVMSGvfviGIVLSL 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1824664451 177 IGnyltasvfcfssfsmfilLMTQILYTVFEFGISMIQAYIFCLL 221
Cdd:PRK13421  182 AG------------------LLVPIPLMALDLLTGAVQAYIFAVL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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