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Conserved domains on  [gi|1869246904|ref|YP_009891508|]
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PSI P700 apoprotein A2 (chloroplast) [Alliaria petiolata]

Protein Classification

photosystem I P700 chlorophyll a apoprotein A2( domain architecture ID 10000058)

photosystem I P700 chlorophyll a apoprotein A2 (PsaB), together with PsaA, forms a heterodimer that binds P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX

EC:  1.97.1.12
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
1-734 0e+00

photosystem I P700 chlorophyll a apoprotein A2


:

Pssm-ID: 176995  Cd Length: 734  Bit Score: 1591.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   1 MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQD 80
Cdd:CHL00054    1 MALRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPK 160
Cdd:CHL00054   81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 161 WKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054  161 WKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 241 SHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHK 320
Cdd:CHL00054  241 SHLFGTSQGAGTAILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIPPGGRLGRGHK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 321 GLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054  321 GLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054  401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 481 TNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054  481 TNSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054  561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054  641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFT 720
                         730
                  ....*....|....
gi 1869246904 721 YAAFLIASTSGKFG 734
Cdd:CHL00054  721 YAAFLIASTSGKFG 734
 
Name Accession Description Interval E-value
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
1-734 0e+00

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 1591.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   1 MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQD 80
Cdd:CHL00054    1 MALRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPK 160
Cdd:CHL00054   81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 161 WKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054  161 WKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 241 SHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHK 320
Cdd:CHL00054  241 SHLFGTSQGAGTAILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIPPGGRLGRGHK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 321 GLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054  321 GLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054  401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 481 TNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054  481 TNSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054  561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054  641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFT 720
                         730
                  ....*....|....
gi 1869246904 721 YAAFLIASTSGKFG 734
Cdd:CHL00054  721 YAAFLIASTSGKFG 734
psaB TIGR01336
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
2-734 0e+00

photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130403  Cd Length: 734  Bit Score: 1435.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   2 ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDP 81
Cdd:TIGR01336   1 ATKFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWIQDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  82 LHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKW 161
Cdd:TIGR01336  81 LHVRPIAHAIWDPHFGQPAVEAFTRGGANYPVNISYSGVYHWWYTIGMRTNSDLYAGALFLLILAALCLFAGWLHLQPKF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 162 KPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSSS 241
Cdd:TIGR01336 161 KPSLSWFKNAESRLNHHLSGLFGVSSLAWAGHLIHVAIPASRGQHVGWNNFLSTLPHPAGLKPFFTGNWGVYAQNPDTAS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 242 HLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPP-GGRLGRGHK 320
Cdd:TIGR01336 241 HVFGTSQGSGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVIFIIAGHMYRTNFGIGHSIKDMLEAHKPPpSGKFGLGHK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 321 GLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:TIGR01336 321 GLYDTINNSLHFQLGLALACLGVITSLVAQHMYSLPPYAFIAQDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDP 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:TIGR01336 401 EQNKDNVLDRMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPIFAQWIQAAHGKTLYGFNVLLSS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 481 TNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:TIGR01336 481 PSSSATTAYGSVWLPGWLDAINSNTNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:TIGR01336 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITIWQGNVSQFNESSTYLMGWFRDYLWLNSSQLINGYNPYGM 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:TIGR01336 641 NNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYVLT 720
                         730
                  ....*....|....
gi 1869246904 721 YAAFLIASTSGKFG 734
Cdd:TIGR01336 721 YAAFLIASTAGKFG 734
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-734 0e+00

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 1285.98  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   1 MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQD 80
Cdd:COG5702     1 MATKFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEENLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPK 160
Cdd:COG5702    81 PLNVRPIAHAIWDPHFGKPAIEAFTQAGASNPVNICYSGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 161 WKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:COG5702   161 FRPSLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPHPAGLAPFFTGNWGVYAQNPDTA 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 241 SHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGG----RLG 316
Cdd:COG5702   241 GHAFGTSQGAGTAILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQGPGRsgffKTG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 317 RGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIR 396
Cdd:COG5702   321 LGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGAFAHGAIFFVR 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 397 DYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDV 476
Cdd:COG5702   401 DYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQFIQAAHGKVLYGIDT 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 477 LLSSTNGPAFNAGR---SIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 553
Cdd:COG5702   481 LLSNPDSVASTAWPnygNVWLPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 554 GYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLIN 633
Cdd:COG5702   561 GYAFPCDGPGRGGTCDISAWDSFYLATFWMLNTIGWVTFYWHWKHLSIWSGNVAQFNESSTYLMGWFRDYLWANSAQLIN 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 634 GYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHF 713
Cdd:COG5702   641 GYSPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLTHF 720
                         730       740
                  ....*....|....*....|.
gi 1869246904 714 SVGYIFTYAAFLIASTSGKFG 734
Cdd:COG5702   721 TVGYIVTYAAFLIASTASLFP 741
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
8-727 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1116.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDPLHVRP 86
Cdd:pfam00223   1 FSQDLAQGPkTTRWIWNLHATAHDFESHDGDTEE-LSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  87 IAHAIWdPHFGQPAVEAFTRGGALGP-VNIAySGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQpKWKPRV 165
Cdd:pfam00223  80 IAHVVW-PHFGQEILNAFTDVGAGFPgVQIT-SGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYH-KFAPKL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 166 SWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHP---------------QGLGPLFTGQW 230
Cdd:pfam00223 157 EWFKNAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPflnpdlmgqlypsfaAGLGPFFTGNW 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 231 NLYAQnpdssshlfgtsqgsgtaILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIP 310
Cdd:pfam00223 237 GAYAD------------------ILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKG 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 311 PGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390
Cdd:pfam00223 299 PGGFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHG 378
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 465
Cdd:pfam00223 379 AIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMfsdtaILLEPVFAQWIQA 458
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 466 AHGKTSYGFDVLLSSTNGPAFNAGRS---IWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDAR 542
Cdd:pfam00223 459 AHGKALYGFNLLASAPGSTAPNAGAGvsdVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDAR 538
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 543 GSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LWQGNV---SQFNESSTYLMG 618
Cdd:pfam00223 539 SSRLMPDKKDLGFRFPCDGPGRGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSdVWGGNVitgGQFAQSSIYING 618
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 619 WLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIrwkdKPV 698
Cdd:pfam00223 619 WLRDFLWAQSSQVINSYG----NSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLI----QPR 690
                         730       740
                  ....*....|....*....|....*....
gi 1869246904 699 ALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
Cdd:pfam00223 691 ALSIVQGRAVGVAHFLLGGIVTTWAFFIA 719
 
Name Accession Description Interval E-value
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
1-734 0e+00

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 1591.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   1 MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQD 80
Cdd:CHL00054    1 MALRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPK 160
Cdd:CHL00054   81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 161 WKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054  161 WKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 241 SHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHK 320
Cdd:CHL00054  241 SHLFGTSQGAGTAILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIPPGGRLGRGHK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 321 GLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054  321 GLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054  401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 481 TNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054  481 TNSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054  561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054  641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFT 720
                         730
                  ....*....|....
gi 1869246904 721 YAAFLIASTSGKFG 734
Cdd:CHL00054  721 YAAFLIASTSGKFG 734
psaB TIGR01336
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
2-734 0e+00

photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130403  Cd Length: 734  Bit Score: 1435.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   2 ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDP 81
Cdd:TIGR01336   1 ATKFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWIQDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  82 LHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKW 161
Cdd:TIGR01336  81 LHVRPIAHAIWDPHFGQPAVEAFTRGGANYPVNISYSGVYHWWYTIGMRTNSDLYAGALFLLILAALCLFAGWLHLQPKF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 162 KPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSSS 241
Cdd:TIGR01336 161 KPSLSWFKNAESRLNHHLSGLFGVSSLAWAGHLIHVAIPASRGQHVGWNNFLSTLPHPAGLKPFFTGNWGVYAQNPDTAS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 242 HLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPP-GGRLGRGHK 320
Cdd:TIGR01336 241 HVFGTSQGSGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVIFIIAGHMYRTNFGIGHSIKDMLEAHKPPpSGKFGLGHK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 321 GLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:TIGR01336 321 GLYDTINNSLHFQLGLALACLGVITSLVAQHMYSLPPYAFIAQDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDP 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:TIGR01336 401 EQNKDNVLDRMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPIFAQWIQAAHGKTLYGFNVLLSS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 481 TNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:TIGR01336 481 PSSSATTAYGSVWLPGWLDAINSNTNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:TIGR01336 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITIWQGNVSQFNESSTYLMGWFRDYLWLNSSQLINGYNPYGM 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:TIGR01336 641 NNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYVLT 720
                         730
                  ....*....|....
gi 1869246904 721 YAAFLIASTSGKFG 734
Cdd:TIGR01336 721 YAAFLIASTAGKFG 734
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-734 0e+00

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 1285.98  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   1 MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQD 80
Cdd:COG5702     1 MATKFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEENLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPK 160
Cdd:COG5702    81 PLNVRPIAHAIWDPHFGKPAIEAFTQAGASNPVNICYSGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 161 WKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:COG5702   161 FRPSLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPHPAGLAPFFTGNWGVYAQNPDTA 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 241 SHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGG----RLG 316
Cdd:COG5702   241 GHAFGTSQGAGTAILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQGPGRsgffKTG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 317 RGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIR 396
Cdd:COG5702   321 LGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGAFAHGAIFFVR 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 397 DYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDV 476
Cdd:COG5702   401 DYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQFIQAAHGKVLYGIDT 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 477 LLSSTNGPAFNAGR---SIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 553
Cdd:COG5702   481 LLSNPDSVASTAWPnygNVWLPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 554 GYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLIN 633
Cdd:COG5702   561 GYAFPCDGPGRGGTCDISAWDSFYLATFWMLNTIGWVTFYWHWKHLSIWSGNVAQFNESSTYLMGWFRDYLWANSAQLIN 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 634 GYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHF 713
Cdd:COG5702   641 GYSPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLTHF 720
                         730       740
                  ....*....|....*....|.
gi 1869246904 714 SVGYIFTYAAFLIASTSGKFG 734
Cdd:COG5702   721 TVGYIVTYAAFLIASTASLFP 741
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
8-727 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1116.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDPLHVRP 86
Cdd:pfam00223   1 FSQDLAQGPkTTRWIWNLHATAHDFESHDGDTEE-LSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  87 IAHAIWdPHFGQPAVEAFTRGGALGP-VNIAySGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQpKWKPRV 165
Cdd:pfam00223  80 IAHVVW-PHFGQEILNAFTDVGAGFPgVQIT-SGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYH-KFAPKL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 166 SWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHP---------------QGLGPLFTGQW 230
Cdd:pfam00223 157 EWFKNAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPflnpdlmgqlypsfaAGLGPFFTGNW 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 231 NLYAQnpdssshlfgtsqgsgtaILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIP 310
Cdd:pfam00223 237 GAYAD------------------ILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKG 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 311 PGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390
Cdd:pfam00223 299 PGGFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHG 378
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 465
Cdd:pfam00223 379 AIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMfsdtaILLEPVFAQWIQA 458
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 466 AHGKTSYGFDVLLSSTNGPAFNAGRS---IWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDAR 542
Cdd:pfam00223 459 AHGKALYGFNLLASAPGSTAPNAGAGvsdVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDAR 538
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 543 GSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LWQGNV---SQFNESSTYLMG 618
Cdd:pfam00223 539 SSRLMPDKKDLGFRFPCDGPGRGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSdVWGGNVitgGQFAQSSIYING 618
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 619 WLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIrwkdKPV 698
Cdd:pfam00223 619 WLRDFLWAQSSQVINSYG----NSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLI----QPR 690
                         730       740
                  ....*....|....*....|....*....
gi 1869246904 699 ALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
Cdd:pfam00223 691 ALSIVQGRAVGVAHFLLGGIVTTWAFFIA 719
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
8-727 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 634.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDPLHVRP 86
Cdd:CHL00056   32 FSRTLAKGPdTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKP 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIAySGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQpKWKPRVS 166
Cdd:CHL00056  111 SAQVVW-PIVGQEILNGDVGGGFRG-IQIT-SGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLA 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAsrgeyvrwNNFLNV--------LPH----------------PQGL 222
Cdd:CHL00056  187 WFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPI--------NQLLDAgvdpkeipLPHefilnrdllaqlypsfAKGL 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 223 GPLFTGQWNLYAQnpdssshlfgtsqgsgtaILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIK 302
Cdd:CHL00056  259 TPFFTLNWSEYSD------------------FLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 303 DLLEAHIPPggRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFI 382
Cdd:CHL00056  321 EILEAHKGP--FTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFL 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 383 MTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPE-----KQILIEP 457
Cdd:CHL00056  399 IVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQdmfsdTAIQLQP 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 458 IFAQWIQSAHgktsygfdVLLSSTNGPAFNAGRS-IWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVK 536
Cdd:CHL00056  479 IFAQWIQNTH--------ALAPGATAPGATASTSlTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLK 550
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 537 GALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWK-HITLW-----QGNVSQ-- 608
Cdd:CHL00056  551 GVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKmQSDVWgsisdQGVVTHit 630
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 609 ---FNESSTYLMGWLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERT 685
Cdd:CHL00056  631 ggnFAQSSITINGWLRDFLWAQASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKL 706
                         730       740       750       760
                  ....*....|....*....|....*....|....*....|..
gi 1869246904 686 PLANLIrwkdKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
Cdd:CHL00056  707 KVAPAI----QPRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
8-731 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 627.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDPLHVRP 86
Cdd:COG5701    34 FDRTLAKGPkTTTWIWNLHALAHDFDTHTSDLEE-ISRKIFSAHFGHLAVVFIWLSGMFFHGARFSNYTAWLADPTGVKP 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIAySGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQpKWKPRVS 166
Cdd:COG5701   113 SAQVVW-PIVGQEILNADVGGGFHG-IQIT-SGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYH-KRAPKLE 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP--------ASRGEYVRWNNFLN------VLPHP-QGLGPLFTGQWN 231
Cdd:COG5701   189 WFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPvnalldagVAAADIPLPHEFLNpslmaqLYPGFaSGVGPFFTLNWG 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 232 LYaqnpdssshlfgtsqgsgTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPP 311
Cdd:COG5701   269 AF------------------SDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGP 330
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 312 GGRL--GRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAH 389
Cdd:COG5701   331 PLLFtgPEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAH 410
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 390 GAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQ 464
Cdd:COG5701   411 AAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMfsdtaIQLQPVFAQWIQ 490
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 465 SAHGKTsygfdvlLSSTNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGS 544
Cdd:COG5701   491 NLHASA-------PGTATAPNAGGTVSEAFGGDVVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVLFARSS 563
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 545 KLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNV-----------SQFNESS 613
Cdd:COG5701   564 RLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVnadgsvnhitgGNFAQSS 643
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 614 TYLMGWLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIrw 693
Cdd:COG5701   644 ITINGWLRDFLWAQSSQVINSYG----SALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI-- 717
                         730       740       750
                  ....*....|....*....|....*....|....*...
gi 1869246904 694 kdKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 731
Cdd:COG5701   718 --QPRALSITQGRAVGVAHYLLGGIATTWAFFLARLIA 753
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
8-727 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 613.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWIQDPLHVRP 86
Cdd:TIGR01335  35 FSRTLAKGPkTTTWIWNLHADAHDFDSHTSDLED-ISRKIFSAHFGQLSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKP 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904  87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIAySGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQpKWKPRVS 166
Cdd:TIGR01335 114 SAQVVW-PIVGQEILNGDVGGGFHG-IQIT-SGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYH-KAAPKLE 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAsrgeyvrwNNFLNV--------LPHPQGLGPLFTGQwnLYAQNPD 238
Cdd:TIGR01335 190 WFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPI--------NKLLDAgvdpkdipLPHEFILNRELMAQ--LYPSFAS 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 239 SSSHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPggRLGRG 318
Cdd:TIGR01335 260 GLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGP--FTGSG 337
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 319 HKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDY 398
Cdd:TIGR01335 338 HKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDY 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 399 NPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQSAHgktsyg 473
Cdd:TIGR01335 418 DPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMfsdtaIQLQPVFAQWIQNLH------ 491
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 474 fdVLLSSTNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 553
Cdd:TIGR01335 492 --TLAPGNTAPNALATTSYAFGGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARNSRLIPDKANL 569
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 554 GYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LW-----QGNVSQ-----FNESSTYLMGWLRD 622
Cdd:TIGR01335 570 GFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSdVWgtvsqNGLVSHitggnFAQSAITINGWLRD 649
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246904 623 YLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIrwkdKPVALSI 702
Cdd:TIGR01335 650 FLWAQASQVIQSYG----SSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSI 721
                         730       740
                  ....*....|....*....|....*
gi 1869246904 703 VQARLVGLAHFSVGYIFTYAAFLIA 727
Cdd:TIGR01335 722 IQGRAVGVAHYLLGGIATTWAFFLA 746
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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