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Conserved domains on  [gi|1919576738|ref|YP_009944057|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Leptocoma aspasia]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.97e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 6.97e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.97e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 6.97e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.89e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  91 HPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTVMKLPPLSLLYMTSPSLNPT-----VLTAMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFCLYSLMTATVFL-----TLNTTKVLKLPSLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1919576738 236 KIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-270 4.93e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 4.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  12 SLIMGTTITM----SSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWD 85
Cdd:COG1007   106 ALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  86 ITQLTHPTS------------CLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLSLLYMTSPSL 149
Cdd:COG1007   185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 150 NP---TVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKL----TLLNFCLYSLMTATVFLTL--- 219
Cdd:COG1007   265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlll 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1919576738 220 --NTTKVLKLPSLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQEL 270
Cdd:COG1007   345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 6.96e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 6.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  14 IMGTTITMSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  92 -----PTSCLLLTAAISM------KLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSL-------NPTV 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 154 LTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKL----TLLNFCLYSLMTATVFLTLNTTKVLKLP- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1919576738 229 ----SLMTAWTKI-PALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.97e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 6.97e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 7.73e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 382.23  E-value: 7.73e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSlNPTVLTAMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQW--HTN 318
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319

                         330       340
                  ....*....|....*....|....*...
gi 1919576738 319 KPTNPmIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00135  320 QLTLP-LAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 9.89e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 379.65  E-value: 9.89e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.25e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 343.75  E-value: 1.25e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*...
gi 1919576738 319 KPTNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.10e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 297.27  E-value: 2.10e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMIRTLF 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-341 1.09e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 236.75  E-value: 1.09e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 TGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQD-MAPAATMIAlLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNK 319
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNsILISIILII-GSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSG 319

                         330       340
                  ....*....|....*....|...
gi 1919576738 320 PTNPMIAILTTLS-ITLLPIAPM 341
Cdd:MTH00041  320 NITVYGVILSILSsISILGLLLI 342
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 7.10e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 182.72  E-value: 7.10e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   1 MNPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  81 tgqwdITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTspsLNPTVLTAMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHTNKp 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNK- 310

                         330       340
                  ....*....|....*....|..
gi 1919576738 321 TNPMIAILTTLSITLLPIAPMI 342
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 1.48e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.13  E-value: 1.48e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   5 AKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  85 DITqlthptscLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNP-TVLTAMAILSAA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 164 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNtTKVLKLPSLMTAWTKIPALNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1919576738 244 LLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 275
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 1.12e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.40  E-value: 1.12e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   7 LIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  87 TQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAILSAALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 167 WMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSLMTAWTKIPALNAMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1919576738 247 TLLSLAGLPPLTGFFPKWLIIQELTKQDM 275
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 1.87e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 136.73  E-value: 1.87e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   8 IFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  88 qLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLymTSPSLNPTVLTAMAILSAALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYSLMTATVFLTLNTTKVLKLPSlMTAWTKIPALNAMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 248 LLSLAG-LPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTItlppHTTNHMKQWHTNKPTNPMIA 326
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                         330
                  ....*....|....*.
gi 1919576738 327 ILTTLSITLLPIAPMI 342
Cdd:MTH00197  308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.89e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  91 HPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTVMKLPPLSLLYMTSPSLNPT-----VLTAMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFCLYSLMTATVFL-----TLNTTKVLKLPSLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1919576738 236 KIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.99e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 2.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  13 LIMGTTITMSSNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  79 WHTGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNptVLTAMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 159 ILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDP----KLTLLNFCLYSLMTATVF---LTLNTTKVLkLPSLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1919576738 232 TAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 8.74e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 101.63  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  13 LIMGTTITMSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  88 QLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNptVLTAMAILSAALGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 168 MGLNQTQIRKIMAFSSISHLGW----MAIILTYDPKLTLLNFCLYSLMTATVF---LTLNTTKVLkLPSLMTAWTKIPAL 240
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 1919576738 241 NAMLLLTLLSLAGLPPLTGFFPKWLII 267
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-270 4.93e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 4.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  12 SLIMGTTITM----SSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWD 85
Cdd:COG1007   106 ALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  86 ITQLTHPTS------------CLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLSLLYMTSPSL 149
Cdd:COG1007   185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 150 NP---TVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKL----TLLNFCLYSLMTATVFLTL--- 219
Cdd:COG1007   265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlll 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1919576738 220 --NTTKVLKLPSLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQEL 270
Cdd:COG1007   345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-190 6.33e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.04  E-value: 6.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  14 IMGTTITMSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVL--------------FSSMTNA 78
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  79 WHTGQWDITQLThpTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLSLLYMTSPSLNPT-- 152
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1919576738 153 -VLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK05777  271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYL 309
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 6.96e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 6.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  14 IMGTTITMSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  92 -----PTSCLLLTAAISM------KLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSL-------NPTV 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 154 LTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKL----TLLNFCLYSLMTATVFLTLNTTKVLKLP- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1919576738 229 ----SLMTAWTKI-PALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 3.49e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.04  E-value: 3.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  13 LIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  92 ---------PTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVM-KLPPLSLLYMTSPSLNP-------TVL 154
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILRVLTLLFGAdpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 155 TAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLY----SLMTATVFLT----LNTTKVLK 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1919576738 227 LPSLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIA 283
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-192 5.60e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.97  E-value: 5.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   9 FAISLI--MGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFSSMTN 77
Cdd:MTH00198  191 FALVLIvgLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALY 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  78 AWHTGQ----WDITQLTHPTS----------CLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLy 143
Cdd:MTH00198  271 FGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL- 349

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1919576738 144 mTSPSLNPTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:MTH00198  350 -TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 7.97e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 7.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  51 RAIEAATKYFLTQAAASALVL--FSSM--TNAWHTGQWDI------TQLTHPTSCLL----LTAAISMKLGLVPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 117 EVLQGSPLITGLLLSTVMKLPPLSL----LYMTSPSLNP---TVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 190 MAI-ILTYDPKLTLLNFCLYSLMTatVFLTLNTTKVLKLPSLMTA----------WTKIPALNAMLLLTLLSLAGLPPLT 258
Cdd:CHL00049  319 VIIgIIVGDSNDGYASMITYMLFY--IFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLA 396


                  ....*
gi 1919576738 259 GFFPK 263
Cdd:CHL00049  397 GFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 3.74e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.00  E-value: 3.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQL--------THPTSCLLLT-----AAISMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 116 PEVLQGSPLITGLLLSTVMKLP----PLSLLYMTSPSLNP---TVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 189 WMAIILTYDPKLTLLNFCLYslMTATVFLTLNTTKVLKLPSLMTAWTKI----------PALNAMLLLTLLSLAGLPPLT 258
Cdd:PRK02504  314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGTDQIsdyaglyqkdPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1919576738 259 GFFPK 263
Cdd:PRK02504  392 GFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.38e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 2.38e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTH---PTS-----CLLLTAAISMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 119 LQGSPLITGLLLSTVM-KLP-------PLSLLYMTSPSLNPTVLtAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1919576738 191 AI 192
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 5.77e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.41  E-value: 5.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSCL-LLTAA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 102 ISMKLGLVPFHFWFPEVLQGSPL-ITGLLLstVMKLPPLSLLY-----MTSPSLNPT----VLTAMAILSAALGGWMGLN 171
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLL--VIKQAGLYALArvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVV 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 172 QTQIRKIMAFSSISHLGWM------AIILTYDPKLTLLNFCL----------YSLMTATVFLT----LNTTKVLKLPSLM 231
Cdd:PRK08376  308 QKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEIAlaggiyhivnHALYKALLFLTagavIYETGTRNLNELG 387

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1919576738 232 TAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLI 266
Cdd:PRK08376  388 GLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 1.45e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 1.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738   2 NPQAKLIFAISLIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  82 GQWDIT-------QLTHPTSC----LLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMK-------------LP 137
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFAlivfLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 138 PLSLL-----YMTSPSLNpTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTL-------LNF 205
Cdd:PRK08668  255 GTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNH 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 206 CLYS----LMTATVFLTLNTTKVLKLPSLmtAWtKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATM 281
Cdd:PRK08668  334 ALFKglffLIFAAVIYRTGTTKISEMGGL--IE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410


                  .
gi 1919576738 282 I 282
Cdd:PRK08668  411 A 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 5.22e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 5.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWHTG------QWDITQLTHPTSCLLLTA---AISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 119 ---LQGSPLITGLLLST--------VMKLPPLSLLYMTspslnpTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygflrfNLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305


                  ....*
gi 1919576738 188 GWMAI 192
Cdd:TIGR01972 306 GFVLL 310
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 7.20e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.52  E-value: 7.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  13 LIMGTTITMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  87 TQLTHPTSCL---LLTAAISM-------KLGLVPFHFWFPEVLQGSP-LITGLLLSTVMKLPPLSLLYMTS-------PS 148
Cdd:PRK08676  191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1919576738 149 LNPTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 1.29e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.94  E-value: 1.29e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1919576738 295 RLAYCTTITLPPHTTNHMKQWHTNKPTN-PMIAILTTLSITLLPIAP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 2.53e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 2.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  96 LLLTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVM---------KLPPLsllYMTSPSLNPTVLTaMAILSAALGG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 167 WMGLNQTQIRKIMAFSSISHLGWMAIILTYDPK------LTLLnfCLYSLMTATVFLTLN-------TTKVLKLPSLmta 233
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGiidhstgTRDIRKLSGL--- 357

                         170       180       190
                  ....*....|....*....|....*....|
gi 1919576738 234 WTKIPALNAMLLLTLLSLAGLPPLTGFFPK 263
Cdd:PRK12644  358 GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 3.87e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.61  E-value: 3.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  23 SNHWVLAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH---------- 91
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  92 --PTSCLLLTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSP--SLNPTVLTAMAILSAA---L 164
Cdd:COG1009   210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAItalF 288

                         170       180       190
                  ....*....|....*....|....*....|
gi 1919576738 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009   289 AALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-271 9.97e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.26  E-value: 9.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  92 PTSCLLLTAAI--SMKLGLvpfHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPTVLTAMAI-----LSAAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILTYD--PKLTLLNFCLYSLMTATVFL---------TLNTTKVLKLPSLMTA 233
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEgsHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1919576738 234 wtkIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIqELT 271
Cdd:MTH00032  383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-336 1.50e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 46.50  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  96 LLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMK-------LPPLSLLYMTSPSLNPTVLTAMAIL------SA 162
Cdd:PRK12667  227 ALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVnvgayaiIRFLYTIFGISPSLIDFRAALSPILiilgavSA 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 163 ALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLY----SLMTATVFLT-------LNTTKVLKLPSLM 231
Cdd:PRK12667  307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhAIAKSLLFLAsgvfihaAGTRDIDELAGLG 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 232 TawtKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNH 311
Cdd:PRK12667  387 R---KMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEV 463

                         250       260
                  ....*....|....*....|....*
gi 1919576738 312 MKqwhtnKPTNPMIAILTTLSITLL 336
Cdd:PRK12667  464 EH-----KESPSMSVVILVLALAVL 483
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 2.01e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.03  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQLTH--PTSCLLLTA------AIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 104 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTVMKLPPLSLL----------YMTSPSLNpTVLTAMAILSAALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 173 TQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLYS----LMTATVFL-------TLNTTKVLKLPSLMTawtKIPALN 241
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTA 369

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1919576738 242 AMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATMI 282
Cdd:PRK08375  370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.01e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.23  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  55 AATKYFLTQAAASALVLFSSMTNAWHTG-------QWDITQLTHPTSCLLLTA---AISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1919576738 124 LITGLLLSTVMKLPPLSLL------YMTSPSLNPTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 3.72e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 3.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPTSC--------LLLTAAISMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 118 VLQGSPLITGLLLSTVM-KLPPLSLLYMTSPsLNPTVLTAMAILSAAL-------GGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPDASHEFAPIIITLgviaiiyGALVALAQTDIKKLIAYSSISHMGF 315


                  ...
gi 1919576738 190 MAI 192
Cdd:PRK05846  316 VTL 318
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.01e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 45.09  E-value: 4.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQ-LTHPTSCLLLTAAI---SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 124 LITGLLLSTVMKLPPLSL------LYMTSPSLNPTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYD 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 198 PKLTLLNFCL----YSLMTATVF-------LTLNTTKVLKLPSLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLI 266
Cdd:PRK07363  318 TQLSLLGAVAqmisHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 1919576738 267 IQ 268
Cdd:PRK07363  398 FQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-195 5.61e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.72  E-value: 5.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPT-----SCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1919576738 130 LSTVM-KLPPLSLLYMTSPSLNPTVLTAMAIL-----SAALGGWMGLNQTQIRKIMAFSSISHLGwmaIILT 195
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG---IILM 311
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 7.35e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.53  E-value: 7.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 101 AISMKLGLVPFHFWFPEVLQGSPLITGLLLSTV-MKLPPLSLLYMTSP-------SLNPTVLtAMAILSAALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|..
gi 1919576738 173 TQIRKIMAFSSISHLGWMAIIL 194
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITL 339
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 2.75e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 42.76  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  95 CLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSP--SLNPTVLTAMAI---LSAALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 170 LNQTQIRKIMAFSSISHLGWMAIILtydpKLTLLNFCLYSLMT-----ATVFLT--------LNTTKVLKLPSLMTAwtk 236
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNhaffkALLFLSagsvihalSDEQDMRKMGGLISF--- 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1919576738 237 IPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 268
Cdd:MTH00020  366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 3.38e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.32  E-value: 3.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  52 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSCLLLTAAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 116 PEVLQGSPLITGLLLSTVMKLPPLSLLYMTSP--SLNPTVLTAMAI---LSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 4.15e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.86  E-value: 4.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSCLLLTAAISMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 111 FHFWFPEVLQGSPLITGLLLS-TVMK--LPPLSLLYMTSPSLNPtVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKagVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 188 GWmaIILTydPKLTLLNFCLYSLMTATVFL---TLNTTKVLKLPSLMTA-WTKIPALNAmllltLLSLAGLPPLTGFFPK 263
Cdd:PRK07234  282 GF--ILAA--PLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLGiGKWIPLTMA-----SFSIAGFPLLAGFVSK 352


                  ....*...
gi 1919576738 264 WLIIQELT 271
Cdd:PRK07234  353 VLTLKNLL 360
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-192 4.78e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  28 LAWtglEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PTSC-LLLTA- 100
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALeLLLYAg 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 101 ---AISMKLGLVPFHFWFPEVL-QGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPT------VLTAMAILSAALGGWMGL 170
Cdd:PRK12561  191 fliAFGVKLPIFPLHTWLPDAHgEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAF 270

                         170       180
                  ....*....|....*....|..
gi 1919576738 171 NQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK12561  271 AQDNVKRRLAYSSVSHMGFVLL 292
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 5.90e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.64  E-value: 5.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------TSCLLLT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 100 AAISMKLGLVPFHFWFPEVLQGSPLITGLLLS----TVMKLPPLSLLY--------MTSPSLNpTVLTAMAILSAALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYdvfkanfvFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFCLY----SLMTATVFLT-------LNTTKVLKLPSLmtaWTK 236
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKS 372

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1919576738 237 IPALNAMLLLTLLSLAGLPPLTGFFPKWLII 267
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 6.60e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.45  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  20 TMSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqwdiTQLTHPTSCL 96
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA-------TVMGDGEMAI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  97 LLTAAISM----------------------KLGLVPFHFWFPEVLQGSPLITGLLLSTVmkLPPLSLL-----YM----- 144
Cdd:PRK06458  197 LWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryYIlidaa 274

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1919576738 145 TSPSLNPTVLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK06458  275 IGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 7.01e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 7.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSCLLLTAAISMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 109 V------PFHFWFPEVLQGS-PLITGLLLS------TVMKLPPLSLLYMTS--PSLNpTVLTAMAILSAALGGWMGLNQT 173
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAkPFGSALLQTfskfvlVALMLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 174 QIRKIMAFSSISHLGWMAIILTYDPKLTL-------LNFCLYS----LMTATVFLTLNTTKVLKLPSLMTAwtkIPALNA 242
Cdd:PRK06277  289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsalfLGAGIVSYRTKTSNLRKLGGLLPV---MPVVAF 365

                         250       260
                  ....*....|....*....|....*.
gi 1919576738 243 MLLLTLLSLAGLPPLTGFFPKWLIIQ 268
Cdd:PRK06277  366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-218 7.09e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.48  E-value: 7.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  68 ALVLFSSMTNAWHTGQWDITQLTHPTSCLLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSP 147
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1919576738 148 --SLNPTVLTAMAILSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMAIILT-YDPKLTLLNFCLYSLMTATVFLT 218
Cdd:MTH00211  260 lfQNNQLILGAVLLLGALtmlFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGlNQPQLAFLHICTHAFFKAMLFMC 336
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.74e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.04  E-value: 3.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSCL--------------LLTAAISMKLGLVPFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 114 WFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSLNPT-----VLTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 189 WMAIILTY----DPKLT-------LLNfclYSLMTATVFLTLN-------TTKVLKLPSLMTawtKIPALNAMLLLTLLS 250
Cdd:PRK12649  316 YLMTMYGYttyhEPGLGvaaatfhLLN---HATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALA 389

                         250
                  ....*....|...
gi 1919576738 251 LAGLPPLTGFFPK 263
Cdd:PRK12649  390 MAGIPPLNGFLSK 402
PRK12650 PRK12650
DUF4040 family protein;
80-190 7.35e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.49  E-value: 7.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  80 HTGQW-DITQLTHPTSCLLLTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLSLLYMTSPSL--NPT---V 153
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1919576738 154 LTAMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-278 8.75e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 37.88  E-value: 8.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738  96 LLLTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTV-MKLPPLSLLYMTSPSLNP-----TVLTAMAILSAALGGWMG 169
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1919576738 170 LNQTQIRKIMAFSSISHLGWMAI--------ILTYDPKLTLLNFC--LY-----SLMTATVFLTLNT----TKVLKLPSL 230
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1919576738 231 MTAWTKIPALNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPA 278
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGA 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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