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Conserved domains on  [gi|1942099423|ref|YP_009968352|]
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hypothetical protein I9961_pgp064 (chloroplast) [Cyanidiococcus yangmingshanensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSII_Ycf12 super family cl27937
Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the ...
 1-33 5.56e-04

Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the photosystem II (PSII) complex. PsbZ has been shown to be required for the association of PsbK and Ycf12 with PSII.


The actual alignment was detected with superfamily member CHL00184:

Pssm-ID: 474983  Cd Length: 33  Bit Score: 31.91  E-value: 5.56e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 1942099423  1 MNWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
 
Name Accession Description Interval E-value
ycf12 CHL00184
Ycf12; Provisional
 1-33 5.56e-04

Ycf12; Provisional


Pssm-ID: 177086  Cd Length: 33  Bit Score: 31.91  E-value: 5.56e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 1942099423  1 MNWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
Ycf12 COG5741
Photosystem II subunit Psb30 (=Ycf12) [Energy production and conversion]; Photosystem II ...
 2-33 4.51e-03

Photosystem II subunit Psb30 (=Ycf12) [Energy production and conversion]; Photosystem II subunit Psb30 (=Ycf12) is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444451  Cd Length: 41  Bit Score: 29.91  E-value: 4.51e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1942099423  2 NWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:COG5741   10 NWEVIFQLTMVALIVIAGPVVIFLLAARGGDL 41
PSII_Ycf12 pfam05969
Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the ...
 2-33 9.97e-03

Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the photosystem II (PSII) complex. PsbZ has been shown to be required for the association of PsbK and Ycf12 with PSII.


Pssm-ID: 461789  Cd Length: 32  Bit Score: 28.79  E-value: 9.97e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1942099423  2 NWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:pfam05969  1 NFEVIAQLTALALIVLAGPAVIVLLALRGGNL 32
 
Name Accession Description Interval E-value
ycf12 CHL00184
Ycf12; Provisional
 1-33 5.56e-04

Ycf12; Provisional


Pssm-ID: 177086  Cd Length: 33  Bit Score: 31.91  E-value: 5.56e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 1942099423  1 MNWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
Ycf12 COG5741
Photosystem II subunit Psb30 (=Ycf12) [Energy production and conversion]; Photosystem II ...
 2-33 4.51e-03

Photosystem II subunit Psb30 (=Ycf12) [Energy production and conversion]; Photosystem II subunit Psb30 (=Ycf12) is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444451  Cd Length: 41  Bit Score: 29.91  E-value: 4.51e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1942099423  2 NWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:COG5741   10 NWEVIFQLTMVALIVIAGPVVIFLLAARGGDL 41
PSII_Ycf12 pfam05969
Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the ...
 2-33 9.97e-03

Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the photosystem II (PSII) complex. PsbZ has been shown to be required for the association of PsbK and Ycf12 with PSII.


Pssm-ID: 461789  Cd Length: 32  Bit Score: 28.79  E-value: 9.97e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1942099423  2 NWHVIAQLTVLALVIAAGPITLIWLSNKKDAL 33
Cdd:pfam05969  1 NFEVIAQLTALALIVLAGPAVIVLLALRGGNL 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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