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Conserved domains on  [gi|1980524068|ref|YP_009988343|]
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apocytochrome b (mitochondrion) [Gelidiella flabella]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 9-365 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   9 ISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMF 88
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  89 FIVVYIHIFRGLYFGSYTKprHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGF 168
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKL--KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 169 SVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFSPN 248
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 249 VLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYWTM 328
Cdd:MTH00156  239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1980524068 329 VGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLIL 365
Cdd:MTH00156  319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 9-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   9 ISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMF 88
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  89 FIVVYIHIFRGLYFGSYTKprHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGF 168
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKL--KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 169 SVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFSPN 248
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 249 VLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYWTM 328
Cdd:MTH00156  239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1980524068 329 VGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLIL 365
Cdd:MTH00156  319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-376 4.76e-146

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 419.20  E-value: 4.76e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLiDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:COG1290    19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYL-FPFVIAAASLVHLAILHQDGSGNPLGID----SNVDKVSMFPYFIIKDLLGLIVFLIFFSA 241
Cdd:COG1290   178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 242 FVYFSPNvlGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPH--KLGGVIAMIAAIAILALLPWIHSTEIRSSRFRP 319
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGsaKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1980524068 320 IYKFLYWTMVGCCLLLGWIGGMPveEPYVLIGQLASVYYFVYFLILLPLLGGVERFL 376
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKTK 390
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-205 2.23e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.70  E-value: 2.23e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGS 205
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 6.36e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.06  E-value: 6.36e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  16 LIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMFFIVVYIH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  96 IFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1980524068 176 NRFFSIHYLFPFVIAAASLVHLAILHQDG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 9-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   9 ISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMF 88
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  89 FIVVYIHIFRGLYFGSYTKprHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGF 168
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKL--KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 169 SVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFSPN 248
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 249 VLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYWTM 328
Cdd:MTH00156  239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1980524068 329 VGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLIL 365
Cdd:MTH00156  319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00131
cytochrome b; Provisional
 7-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 508.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00131    9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00131   89 FFFICIYLHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00131  167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00131  247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLLEF 379
Cdd:MTH00131  327 TLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00191
cytochrome b; Provisional
 5-368 1.17e-180

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 505.99  E-value: 1.17e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   5 KRPLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANG 84
Cdd:MTH00191    4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  85 ASMFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWL 164
Cdd:MTH00191   84 ASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 165 WGGFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVY 244
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 245 FSPNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFL 324
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1980524068 325 YWTMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPL 368
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00119
cytochrome b; Provisional
 7-377 3.64e-178

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 500.20  E-value: 3.64e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00119   10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00119   90 MFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00119  168 GFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFS 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00119  248 PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLL 377
Cdd:MTH00119  328 TLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
CYTB MTH00145
cytochrome b; Provisional
 5-379 6.79e-177

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 496.74  E-value: 6.79e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   5 KRPLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANG 84
Cdd:MTH00145    8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  85 ASMFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWL 164
Cdd:MTH00145   88 ASFFFICIYLHIGRGLYYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 165 WGGFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVY 244
Cdd:MTH00145  166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 245 FSPNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFL 324
Cdd:MTH00145  246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1980524068 325 YWTMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLIlLPLLGGVERFLLEF 379
Cdd:MTH00145  326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNILDY 379
CYTB MTH00100
cytochrome b; Provisional
 7-379 7.32e-174

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 489.15  E-value: 7.32e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00100    9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00100   89 MFFICLFLHVGRGLYYGSYLFLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00100  167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00100  247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLLEF 379
Cdd:MTH00100  327 LLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00074
cytochrome b; Provisional
 7-379 2.18e-173

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 488.04  E-value: 2.18e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00074   10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00074   90 FFFICIYLHIGRGLYYGSYMYKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00074  168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00074  248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLLEF 379
Cdd:MTH00074  328 LLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00022
cytochrome b; Validated
 1-380 5.29e-169

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 476.89  E-value: 5.29e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   1 MRLIKR-PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRY 79
Cdd:MTH00022    1 MPLRKEnPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  80 IHANGASMFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDS 159
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFH--VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 160 IVTWLWGGFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFF 239
Cdd:MTH00022  159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 240 SAFVYFSPNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRP 319
Cdd:MTH00022  239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRP 318

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980524068 320 IYKFLYWTMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLLEFK 380
Cdd:MTH00022  319 LGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00034
cytochrome b; Validated
 7-377 3.83e-167

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 472.27  E-value: 3.83e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00034    9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00034   89 LFFICLYFHIGRGLYYGSYVNIE--TWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00034  167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00034  247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLL 377
Cdd:MTH00034  327 LLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00053
cytochrome b; Provisional
 7-377 2.70e-165

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 467.65  E-value: 2.70e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKprHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTK--IIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00053  168 GFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLF 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00053  248 PYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILLPLLGGVERFLL 377
Cdd:MTH00053  328 FLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
CYTB MTH00016
cytochrome b; Validated
 7-365 1.02e-163

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 463.38  E-value: 1.02e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00016   10 PLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRhwVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00016   90 FFFICLYLHIGRGIYYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00016  168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00016  248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFW 327

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLIL 365
Cdd:MTH00016  328 LLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-376 4.76e-146

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 419.20  E-value: 4.76e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLiDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:COG1290    19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYL-FPFVIAAASLVHLAILHQDGSGNPLGID----SNVDKVSMFPYFIIKDLLGLIVFLIFFSA 241
Cdd:COG1290   178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 242 FVYFSPNvlGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPH--KLGGVIAMIAAIAILALLPWIHSTEIRSSRFRP 319
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGsaKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1980524068 320 IYKFLYWTMVGCCLLLGWIGGMPveEPYVLIGQLASVYYFVYFLILLPLLGGVERFL 376
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKTK 390
CYTB MTH00224
cytochrome b; Provisional
 7-364 2.95e-143

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 411.62  E-value: 2.95e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:MTH00224   10 PAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTkpRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:MTH00224   90 MFFLFIYLHVGRGLYYGSFN--LSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00224  168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00224  248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLI 364
Cdd:MTH00224  328 LLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-379 1.77e-125

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 366.57  E-value: 1.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   1 MRLIKRPLISIVNDhLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYI 80
Cdd:MTH00033    1 MRLRKTGLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  81 HANGASMFFIVVYIHIFRGLYFGSYTkpRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSI 160
Cdd:MTH00033   80 HANGASLFFICVYCHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 161 VTWLWGGFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGlivFLIFFS 240
Cdd:MTH00033  158 VEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG---FLILFG 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 241 AFVYFS-----PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSS 315
Cdd:MTH00033  235 VFVIIGiepriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSL 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1980524068 316 RFRPIYKFLYWTMVGCCLLLGWIGGMPV-EEPYVLIGQLASVYYFVYFLILLPLLGGVERFLLEF 379
Cdd:MTH00033  315 TFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEY 379
CYTB MTH00086
cytochrome b; Provisional
 10-366 1.12e-111

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 330.36  E-value: 1.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  10 SIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMFF 89
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  90 IVVYIHIFRGLYFGSYTkpRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGFS 169
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 170 VDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFsAFVYFSPNV 249
Cdd:MTH00086  159 VSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFI-IFSLFYPFN 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 250 LGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSteiRSSRFRPIYKFLYWTMV 329
Cdd:MTH00086  238 LGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNN---YTSCLNKLNKFLVFSFI 314

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1980524068 330 GCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLILL 366
Cdd:MTH00086  315 VVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-205 2.23e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.70  E-value: 2.23e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   7 PLISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  87 MFFIVVYIHIFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1980524068 167 GFSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGS 205
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199
CYTB MTH00046
cytochrome b; Validated
 8-364 6.75e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 264.54  E-value: 6.75e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068   8 LISIVNDHLIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASM 87
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  88 FFIVVYIHIFRGLYFGSYTKprHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGG 167
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSK--KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 168 FSVDNATLNRFFSIHYLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMF-PYFIIKDLLGLIVFLIFFSAFVYFS 246
Cdd:MTH00046  159 FSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDVVYFhSYFTVKDLFLFMVVCSLLVFWLFVS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 247 PNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILallpWIhSTEIRSSRFRPIYKFLYW 326
Cdd:MTH00046  239 PDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFL----WV-PTFNGSSVYSVWRQVNFW 313

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1980524068 327 TMVGCCLLLGWIGGMPVEEPYVLIGQLASVYYFVYFLI 364
Cdd:MTH00046  314 LIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 6.36e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.06  E-value: 6.36e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  16 LIDYPTPINIHYAWNFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMFFIVVYIH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  96 IFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1980524068 176 NRFFSIHYLFPFVIAAASLVHLAILHQDG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 31-209 2.26e-50

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 168.35  E-value: 2.26e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  31 FGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMFFIVVYIHIFRGLYFGSYTKPRH 110
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 111 WVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGFSVDNATLNRFFSIH-YLFPFVI 189
Cdd:PRK03735  124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1980524068 190 AAASLVHLAILHQDGSGNPL 209
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 1.14e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 153.57  E-value: 1.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 207 NPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVYFSPNVLGHADNYIEANPMVTPAHIVPEWYFLPFYAILRSIPH 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1980524068 287 KLGGVIAMIAAIAILALLPWIHSTEIRsSRFRPIYKFLYWTMVGCCLLLGWIGGMPVEEPYVLIGQLA 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-251 2.35e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 150.85  E-value: 2.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  86 SMFFIVVYIHIFRGLYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 166 GGFSVDNATLNRFFSIH-YLFPFVIAAASLVHLAILHQDGSGNPLGIDSNVDKVSMFPYFIIKDLLGLIVFLIFFSAFVY 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*..
gi 1980524068 245 FSPNVLG 251
Cdd:pfam13631 161 INPIWLG 167
petB CHL00070
cytochrome b6
 20-209 1.19e-41

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 145.63  E-value: 1.19e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068  20 PTPINIHYAwnFGFLSAMCLIIQILTGVFLAMHYTPHVDLAFASVEHIMRDVNYGWLLRYIHANGASMFFIVVYIHIFRG 99
Cdd:CHL00070   27 PPHVNIFYC--LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRV 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 100 LYFGSYTKPRHWVWVIGVIIFFLMMGTAFMGYILPWGQMSLWGATVITNLASAIPFVGDSIVTWLWGGFSVDNATLNRFF 179
Cdd:CHL00070  105 YLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1980524068 180 SIH-YLFPFVIAAASLVHLAILHQDGSGNPL 209
Cdd:CHL00070  185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 2.91e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 138.00  E-value: 2.91e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524068 258 EANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGVIAMIAAIAILALLPWIHSTEIRSSRFRPIYKFLYWTMVGCCLLLGW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1980524068 338 IGGMPVEEPYVLIGQLASVYY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petD CHL00058
cytochrome b6/f complex subunit IV
 259-291 2.66e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 50.00  E-value: 2.66e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1980524068 259 ANPMVTPAHIVPEWYFLPFYAILRSIPHKLGGV 291
Cdd:CHL00058   66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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