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Full Results
NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Heteromorpha arborescens]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 896.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 1 MT A PATR N DLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATR K DLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 81 ITVNAPEQLGNIQVPKRASY V RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASY I RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 161 GGVAADLP H GWIDKCLDFCDYFLT R V T EYQ R LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQ K LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 241 S YDEFDW G VQWQKEGDSLARYLVR LS EMTESIKIIQQALEGIPGGPYENLE I RRFD KVW D P EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQKEGDSLARYLVR IG EMTESIKIIQQALEGIPGGPYENLE A RRFD REK D S EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017993403 321 LSKQELYVRVEAPKGELGIFLIGD KG VFPWRWKIRPPGFINLQILP R LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 896.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 1 MT A PATR N DLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATR K DLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 81 ITVNAPEQLGNIQVPKRASY V RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASY I RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 161 GGVAADLP H GWIDKCLDFCDYFLT R V T EYQ R LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQ K LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 241 S YDEFDW G VQWQKEGDSLARYLVR LS EMTESIKIIQQALEGIPGGPYENLE I RRFD KVW D P EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQKEGDSLARYLVR IG EMTESIKIIQQALEGIPGGPYENLE A RRFD REK D S EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017993403 321 LSKQELYVRVEAPKGELGIFLIGD KG VFPWRWKIRPPGFINLQILP R LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
9-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 585.50
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 9 DL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P E Q 88
Cdd:COG0649 5 EE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 89 L GN I Q VP K RA S Y V RVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 168
Cdd:COG0649 85 L LG I E VP E RA Q Y I RVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 169 H G WID K CLD F C DYF LT R VT EY QR L I T R N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y ES YDE F D WG 248
Cdd:COG0649 165 D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 249 V QWQK EGD SLA RYLVR LS EM TE S IK II Q Q A L EGI P G GP Y e NLEIRRFDKVWDP E WNDFDYRF I S -- K KPSPT F ELSKQ E L 326
Cdd:COG0649 245 V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP V - MAKDPKIAPPPKE E MKTSMEAL I H hf K LVTEG F KVPAG E V 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2017993403 327 Y VR VE A P K GELG IF L IG D K G VF P W R W KIR P P G F I NLQ I LP RLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 324 Y AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
2.78e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 455.65
E-value: 2.78e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 89 L GN I Q VP K RA SYV RV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QVI RV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 169 HG W IDKCLD F CDY F LT R VTE Y QR L ITR N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE S YDE F D WG 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 249 V QWQKE GD SLA RYL V R LS EM T ESIKII Q Q A LE GI P G GP Y enleirrfd K VWD P E wndfd YRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- K ADN P K ----- LAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D K G VF P W R W KIR P P G F IN LQ I L PRLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.48e-142
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 405.23
E-value: 2.48e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DYF LT R VT EY QR L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 205 GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y ES YDE F D WG V QWQK EGD SLA RYLVR LS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 285 GP YEN l EIRRF dk VWD P E ------ WNDFDYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D K G VF P W R W KIR P P G 358
Cdd:pfam00346 161 GP VMA - DDPKI -- ALP P K eemkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S 235
250 260 270
....*....|....*....|....*....|....*
gi 2017993403 359 F I NLQ I LP RLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 236 F A NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 896.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 1 MT A PATR N DLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATR K DLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 81 ITVNAPEQLGNIQVPKRASY V RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASY I RVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 161 GGVAADLP H GWIDKCLDFCDYFLT R V T EYQ R LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQ K LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 241 S YDEFDW G VQWQKEGDSLARYLVR LS EMTESIKIIQQALEGIPGGPYENLE I RRFD KVW D P EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQKEGDSLARYLVR IG EMTESIKIIQQALEGIPGGPYENLE A RRFD REK D S EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017993403 321 LSKQELYVRVEAPKGELGIFLIGD KG VFPWRWKIRPPGFINLQILP R LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 731.54
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 1 M TAPA TR NDL M IV N M GP Q HPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GP H HPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 81 ITVNAPE Q L G NI Q VPKRASY V RVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 ITVNAPE K L A NI P VPKRASY I RVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 160 IGGVAADLP H GW ID KCLDFCDYF LTRVT EY QR LIT R NPIF LE R V EG V G I I GG EEAINWGLSGPMLRASG IQ WDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLP Y GW LE KCLDFCDYF GPKID EY EK LIT N NPIF RR R I EG L G T I SR EEAINWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 240 E S YD E FDW G V Q W QK EGD S LARY L VR LS EM T ES I KII Q QA LE GIPGGPYENLE IR R FDKVWDP EWN D FDY RFIS KK PS PTF 319
Cdd:PRK07415 241 E C YD D FDW D V A W ET EGD C LARY R VR IE EM R ES V KII R QA CK GIPGGPYENLE AK R MAEGKKS EWN G FDY QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2017993403 320 ELSKQ ELYVR V E AP KGELGIF LI G DKG V F PWRWKIR PPG F I NLQILP R L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
9-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 585.50
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 9 DL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P E Q 88
Cdd:COG0649 5 EE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 89 L GN I Q VP K RA S Y V RVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 168
Cdd:COG0649 85 L LG I E VP E RA Q Y I RVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 169 H G WID K CLD F C DYF LT R VT EY QR L I T R N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y ES YDE F D WG 248
Cdd:COG0649 165 D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 249 V QWQK EGD SLA RYLVR LS EM TE S IK II Q Q A L EGI P G GP Y e NLEIRRFDKVWDP E WNDFDYRF I S -- K KPSPT F ELSKQ E L 326
Cdd:COG0649 245 V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP V - MAKDPKIAPPPKE E MKTSMEAL I H hf K LVTEG F KVPAG E V 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2017993403 327 Y VR VE A P K GELG IF L IG D K G VF P W R W KIR P P G F I NLQ I LP RLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 324 Y AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
9-393
2.85e-172
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 486.20
E-value: 2.85e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 9 DLMIV N M GPQHP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVN A P E Q 88
Cdd:PRK06075 5 RNYTL N F GPQHP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL A V E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 89 L GN I Q VP K RA S Y V RV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GGV AA DLP 168
Cdd:PRK06075 85 L LG I E VP E RA Q Y I RV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 169 H G WIDKCL DF C DYF LT R VTE Y QR L I T R N P I FLE R VE GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH YE S YDE F D WG 248
Cdd:PRK06075 165 D G LLEDIR DF L DYF PK R LDD Y ET L L T D N R I WKQ R LV GVG VVSK E R A LAL G FT GPMLRASG VA WDLRK SQP YE V YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 249 V QWQ K E GD SLA RYLVR LS EM TE S IK II Q Q A L E -- GI P G GP Y enl EIRRFDKVWDP -- E WNDFDYRF I S -- K KPSPT F ELS 322
Cdd:PRK06075 245 V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V --- MVDDPKIAPPA rl E MKTSMEAL I H hf K LVTEG F RVP 321
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2017993403 323 KQ E L Y VR VE A PKGE L G IF L IG D K G VF P W R W KIR P P G F IN LQ I L PRLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 322 AG E V Y AA VE S PKGE F G VY L VS D G G NK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
6-393
1.26e-162
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 460.71
E-value: 1.26e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 6 T R NDL M IV N M GPQHPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVN A 85
Cdd:PRK12322 2 L R TEE M LL N V GPQHPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH A 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 86 P E QLGNIQ VP K RA S Y V RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGGV AA 165
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGGV KW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 166 D L P H GWI D K CLD F CD Y FLTRVTE Y QR L I T R N P IFL E RV E GVGI IGG EEAI NWG LSG PM LR AS G IQ WDLRK VDH Y ES YD E F 245
Cdd:PRK12322 162 D A P D GWI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVGI YSA EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R F 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 246 D WGVQWQKE GD SLA RY LV R LS E MTE S I KII Q QA L E GI P - G GP yenleirrfdkvwdpewndfdyrf ISK K PSPTFELS K Q 324
Cdd:PRK12322 242 D FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K G 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2017993403 325 E L YVR V E A P K GE L G IFLIG D KGVF P W R W K I R P P G F I NLQILP R L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
2.78e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 455.65
E-value: 2.78e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 89 L GN I Q VP K RA SYV RV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QVI RV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 169 HG W IDKCLD F CDY F LT R VTE Y QR L ITR N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE S YDE F D WG 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 249 V QWQKE GD SLA RYL V R LS EM T ESIKII Q Q A LE GI P G GP Y enleirrfd K VWD P E wndfd YRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- K ADN P K ----- LAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D K G VF P W R W KIR P P G F IN LQ I L PRLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.48e-142
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 405.23
E-value: 2.48e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DYF LT R VT EY QR L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 205 GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y ES YDE F D WG V QWQK EGD SLA RYLVR LS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 285 GP YEN l EIRRF dk VWD P E ------ WNDFDYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D K G VF P W R W KIR P P G 358
Cdd:pfam00346 161 GP VMA - DDPKI -- ALP P K eemkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S 235
250 260 270
....*....|....*....|....*....|....*
gi 2017993403 359 F I NLQ I LP RLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 236 F A NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
1.11e-133
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 401.46
E-value: 1.11e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 8 NDLM I V N M GPQHP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN AP E 87
Cdd:PRK13292 402 EETL I L N L GPQHP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 88 Q L GN I Q VP K RA S Y V RV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I Y I RV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 168 P H GW IDKCLD F CDY F LT R VT EY QR L I T R NPIF LE R VE GVG I I GGE EA IN WG L SGP M LRA S G IQ WDLRK VDH Y ES YD E FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PG R LK EY ED L L T G NPIF KA R LK GVG V I TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 248 G V QWQKE GD SL ARYLVR LS EM TE S IK I IQ QA LE G I PGG PYENLEI R ----- RF D KVW D P E wn DFDYR F ISKKPS P T fe LS 322
Cdd:PRK13292 642 E V PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R yvlpq KR D TLK D I E -- SLIHH F VNVTRG P A -- PP 717
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2017993403 323 K Q E L Y VRV EAPKGE L G I F LIG D KGVFPW R WK IR P P G F INL Q I LP R L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 718 K G E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
8-393
8.54e-121
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 361.55
E-value: 8.54e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 8 N D L M IV N M GP Q HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V N A P E 87
Cdd:PRK11742 189 E D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V L A V E 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 88 Q L GN I Q VP K R ASYV RV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK11742 269 K L AG I T VP D R VNVI RV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DL 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 168 P H GW i D KC L - D F C D YFLT R VT EY QRLIT RN P I FLE R VE GV GIIGGE EA IN WG LS G PM LRA S GI QW D L RK VDH Y ES Y DE FD 246
Cdd:PRK11742 349 P R GW - D RL L r E F L D WMPK R LD EY EKAAL RN S I LKG R TQ GV AAYNAK EA LE WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD 427
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 247 WG V QWQKE GD SLA R YL V RLS EM TE S IK II Q Q A L EGI P G GP Y ------------------- E N L e I RR F DK V - W D P ewndf 306
Cdd:PRK11742 428 FE V PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP F kadhplttpppkertlqhi E T L - I TH F LQ V s W G P ----- 501
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 307 dyrfiskkpsptf ELSKQ E LYVRV EA P KG ELGIF L IG D KGVFPW R WK IR P P G F IN LQ IL P RLVKRMKLA D IMTI LGSID I 386
Cdd:PRK11742 502 ------------- VMPAN E SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID F 568
....*..
gi 2017993403 387 I M GE VDR 393
Cdd:PRK11742 569 V M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
10-385
1.24e-99
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 304.20
E-value: 1.24e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 10 LMIVNM GP Q H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf TE 79
Cdd:COG3261 122 VHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- CQ 196
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 80 A I tvnap E QLGN I Q VP K RA S Y V RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNYFR 159
Cdd:COG3261 197 A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGINV 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 160 I GGV AA DL PHGWIDKC L DFC D YFLTR V T E YQR L ITRN P IF L E R VE G V G IIGG E E A INW G LS GP ML RASG IQW D L R KVDH Y 239
Cdd:COG3261 272 P GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VLSK E D A RDL G AV GP VA RASG VDR D V R RDHP Y 351
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017993403 240 ES YDE F D WG V QWQK EGD SL AR Y LVRL S E MT ES IKI I Q QALE GI P G GP YEN leirrfdkvwd P EWNDFDYRFI skkpsptf 319
Cdd:COG3261 352 AA YDE L D FK V VTET EGD VY AR A LVRL E E IF ES LDL I R QALE KL P E GP IRV ----------- P VPGLPPDGEG -------- 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2017993403 320 elskqel YV RVEAP K GEL GIFLIG D KGVFPW R W KIR P P G F I N LQI L PRLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 ------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
