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Conserved domains on  [gi|2088253771|ref|YP_010154749|]
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cytochrome b (mitochondrion) [Thyreus decorus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-364 8.11e-174

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 488.14  E-value: 8.11e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  10 MKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFY 89
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  90 FLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSI 169
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 170 NNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYYF 249
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 250 SDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFIN 329
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2088253771 330 NFILLTWLGGKVIELPYTMINETMTLSYFMYFFLF 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-364 8.11e-174

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 488.14  E-value: 8.11e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  10 MKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFY 89
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  90 FLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSI 169
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 170 NNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYYF 249
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 250 SDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFIN 329
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2088253771 330 NFILLTWLGGKVIELPYTMINETMTLSYFMYFFLF 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
13-363 8.68e-98

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 295.93  E-value: 8.68e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  13 FFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLL 92
Cdd:COG1290    23 LVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  93 MYIHISRNIWYSSFKY--KDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSIN 170
Cdd:COG1290   103 VYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 171 NATLNRFYSIH-FIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIY----MVEFYPYFLIKDLLGFVLILLLFFYINFQF 245
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 246 PyyFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIP--NKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLY 323
Cdd:COG1290   263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2088253771 324 YWFFINNFILLTWLGGKviELPYTMINETMTLSYFMYFFL 363
Cdd:COG1290   341 GVAFIVFFIVLTILGAN--PPIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-205 9.68e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 219.93  E-value: 9.68e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   9 LMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASF 88
Cdd:cd00284     2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  89 YFLLMYIHISRNIWYSSFK--YKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGG 166
Cdd:cd00284    82 FFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2088253771 167 YSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSN 205
Cdd:cd00284   162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-203 6.75e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 202.23  E-value: 6.75e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  18 IKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIHI 97
Cdd:pfam00033   2 VSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  98 SRNIWYSSFKY--KDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLN 175
Cdd:pfam00033  82 FRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161

                         170       180
                  ....*....|....*....|....*...
gi 2088253771 176 RFYSIHFIMPFVILMFVIIHLFFLHLHG 203
Cdd:pfam00033 162 RFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-290 5.13e-05

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 43.25  E-value: 5.13e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGV 290
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-364 8.11e-174

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 488.14  E-value: 8.11e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  10 MKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFY 89
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  90 FLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSI 169
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 170 NNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYYF 249
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 250 SDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFIN 329
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2088253771 330 NFILLTWLGGKVIELPYTMINETMTLSYFMYFFLF 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 5-375 2.95e-157

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 447.04  E-value: 2.95e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   5 KLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHIN 84
Cdd:MTH00145    7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  85 GASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIW 164
Cdd:MTH00145   87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 165 GGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQ 244
Cdd:MTH00145  167 GGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 245 FPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYY 324
Cdd:MTH00145  247 FPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2088253771 325 WFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFIYKMWEFIL 375
Cdd:MTH00145  327 WIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 4-367 1.43e-152

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 434.73  E-value: 1.43e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   4 MKLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHI 83
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  84 NGASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWI 163
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 164 WGGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINF 243
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 244 QFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLY 323
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2088253771 324 YWFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFI 367
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00119
cytochrome b; Provisional
 1-363 5.83e-152

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 433.56  E-value: 5.83e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   1 MNYMKLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRL 80
Cdd:MTH00119    3 PNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  81 IHINGASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLV 160
Cdd:MTH00119   83 LHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 161 NWIWGGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFY 240
Cdd:MTH00119  163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 241 INFQFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLG 320
Cdd:MTH00119  243 LALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLS 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2088253771 321 KLYYWFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFL 363
Cdd:MTH00119  323 QLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00016
cytochrome b; Validated
 4-375 3.60e-148

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 424.09  E-value: 3.60e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   4 MKLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHI 83
Cdd:MTH00016    6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  84 NGASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWI 163
Cdd:MTH00016   86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 164 WGGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINF 243
Cdd:MTH00016  166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 244 QFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLY 323
Cdd:MTH00016  246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2088253771 324 YWFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFIYKMWEFIL 375
Cdd:MTH00016  326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00131
cytochrome b; Provisional
 5-365 1.26e-136

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 394.79  E-value: 1.26e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   5 KLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHIN 84
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  85 GASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIW 164
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 165 GGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQ 244
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 245 FPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYY 324
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2088253771 325 WFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFS 365
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLM 366
CYTB MTH00074
cytochrome b; Provisional
 5-372 8.32e-134

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 387.50  E-value: 8.32e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   5 KLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHIN 84
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  85 GASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIW 164
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 165 GGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQ 244
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 245 FPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYY 324
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 2088253771 325 WFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFIYKMWE 372
Cdd:MTH00074  327 WLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00100
cytochrome b; Provisional
 1-359 2.05e-133

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 386.30  E-value: 2.05e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   1 MNYMKLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRL 80
Cdd:MTH00100    2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  81 IHINGASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLV 160
Cdd:MTH00100   82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 161 NWIWGGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFY 240
Cdd:MTH00100  162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 241 INFQFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLG 320
Cdd:MTH00100  242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2088253771 321 KLYYWFFINNFILLTWLGGKVIELPYTMINETMTLSYFM 359
Cdd:MTH00100  322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00034
cytochrome b; Validated
 9-364 1.74e-130

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 379.05  E-value: 1.74e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   9 LMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASF 88
Cdd:MTH00034   10 LFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  89 YFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYS 168
Cdd:MTH00034   90 FFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 169 INNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYY 248
Cdd:MTH00034  170 VDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTA 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 249 FSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFI 328
Cdd:MTH00034  250 LNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLI 329

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2088253771 329 NNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLF 364
Cdd:MTH00034  330 ATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFF 365
CYTB MTH00022
cytochrome b; Validated
 1-363 1.26e-127

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 371.73  E-value: 1.26e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   1 MNYMKLNNLMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRL 80
Cdd:MTH00022    1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  81 IHINGASFYFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLV 160
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 161 NWIWGGYSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFY 240
Cdd:MTH00022  161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 241 INFQFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLG 320
Cdd:MTH00022  241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2088253771 321 KLYYWFFINNFILLTWLGGKVIELPYTMINETMTLSYFMYFFL 363
Cdd:MTH00022  321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00224
cytochrome b; Provisional
 9-377 5.19e-127

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 370.41  E-value: 5.19e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   9 LMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASF 88
Cdd:MTH00224   11 AIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  89 YFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYS 168
Cdd:MTH00224   91 FFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 169 INNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYY 248
Cdd:MTH00224  171 VDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 249 FSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFI 328
Cdd:MTH00224  251 FTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 2088253771 329 NNFILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFIYKMWEFILNT 377
Cdd:MTH00224  331 TSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLNA 379
CYTB MTH00053
cytochrome b; Provisional
 18-372 2.96e-126

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 368.26  E-value: 2.96e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  18 IKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIHI 97
Cdd:MTH00053   20 IDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHI 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  98 SRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLNRF 177
Cdd:MTH00053  100 GRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRF 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 178 YSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYYFSDPDNFKI 257
Cdd:MTH00053  180 YSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQ 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFINNFILLTWL 337
Cdd:MTH00053  260 ANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWI 339

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2088253771 338 GGKVIELPYTMINETMTLSYFMYFFLFSFIYKMWE 372
Cdd:MTH00053  340 GGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00086
cytochrome b; Provisional
 12-369 1.14e-104

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 312.26  E-value: 1.14e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  12 MFFYSM-IKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYF 90
Cdd:MTH00086    1 NFVNSLvVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  91 LLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSIN 170
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 171 NATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYiNFQFPYYFS 250
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIF-SLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 251 DPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNmlgKLYYWFFINN 330
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLN---KFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2088253771 331 FILLTWLGGKVIELPYTMINETMTLSYFMYFFLFSFIYK 369
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
CYTB MTH00033
cytochrome b; Provisional
 17-364 1.47e-100

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 303.01  E-value: 1.47e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  17 MIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIH 96
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  97 ISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLNR 176
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 177 FYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQ--FPYYFSDPDN 254
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPEN 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 255 FKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFINNFILL 334
Cdd:MTH00033  255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                         330       340       350
                  ....*....|....*....|....*....|.
gi 2088253771 335 TWLGGKVIEL-PYTMINETMTLSYFMYFFLF 364
Cdd:MTH00033  335 TWIGSAPAGAdPYVLIGRIATIFYFGYFLVL 365
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
13-363 8.68e-98

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 295.93  E-value: 8.68e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  13 FFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLL 92
Cdd:COG1290    23 LVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  93 MYIHISRNIWYSSFKY--KDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSIN 170
Cdd:COG1290   103 VYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 171 NATLNRFYSIH-FIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIY----MVEFYPYFLIKDLLGFVLILLLFFYINFQF 245
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 246 PyyFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIP--NKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLY 323
Cdd:COG1290   263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2088253771 324 YWFFINNFILLTWLGGKviELPYTMINETMTLSYFMYFFL 363
Cdd:COG1290   341 GVAFIVFFIVLTILGAN--PPIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 9-366 1.27e-71

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 227.56  E-value: 1.27e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   9 LMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASF 88
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  89 YFLLMYIHISRNIWYSSFKYKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYS 168
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 169 INNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSNNSLGVESKIY-MVEFYPYFLIKDLLGFVLILLLFFYINFQFPY 247
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSdVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 248 YFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVtalILSILILFLMSIFKNNISKSnkFNMLGKLYYWFF 327
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL---VLVLSFLFFLWVPTFNGSSV--YSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2088253771 328 INNFILLTWLGGKVIELPYTMINEtmTLSYFMYFFLFSF 366
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQ--LFSVLMVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-205 9.68e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 219.93  E-value: 9.68e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771   9 LMKMFFYSMIKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASF 88
Cdd:cd00284     2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  89 YFLLMYIHISRNIWYSSFK--YKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGG 166
Cdd:cd00284    82 FFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2088253771 167 YSINNATLNRFYSIHFIMPFVILMFVIIHLFFLHLHGSN 205
Cdd:cd00284   162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-203 6.75e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 202.23  E-value: 6.75e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  18 IKLPTPLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIHI 97
Cdd:pfam00033   2 VSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  98 SRNIWYSSFKY--KDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLN 175
Cdd:pfam00033  82 FRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161

                         170       180
                  ....*....|....*....|....*...
gi 2088253771 176 RFYSIHFIMPFVILMFVIIHLFFLHLHG 203
Cdd:pfam00033 162 RFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
87-227 5.76e-35

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 126.20  E-value: 5.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  87 SFYFLLMYIHISRNIWYSSFKY--KDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIW 164
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2088253771 165 GGYSINNATLNRFYSIHF-IMPFVILMFVIIHLFFLHLHGSNNSLGVESKIYMVEFYPYFLIKD 227
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
PRK03735 PRK03735
cytochrome b6; Provisional
 32-203 8.63e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 119.82  E-value: 8.63e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  32 FGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIHISRNIWYSSFKYKD- 110
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 111 -VWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLNRFYSIH-FIMPFVI 188
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*
gi 2088253771 189 LMFVIIHLFFLHLHG 203
Cdd:PRK03735  204 AVLMLAHFLMIRKQG 218
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 206-350 7.64e-31

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 114.67  E-value: 7.64e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 206 NSLGVESKIYMVEFYPYFLIKDLLGFVLILLLFFYINFQFPYYFSDPDNFKIANSMVTPIHIKPEWYFLFAYSILRAIPN 285
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2088253771 286 KLGGVTALILSILILFLMsIFKNNISKSNKFNMLGKLYYWFFINNFILLTWLGGKVIELPYTMIN 350
Cdd:cd00290    81 KLLGVLAMAASILSLFLV-PFLENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLIL 144
petB CHL00070
cytochrome b6
 23-203 2.76e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 112.89  E-value: 2.76e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771  23 PLNINLWWNFGSMLGLFLMIQIISGFLLSLHYCPNIELAFKMIIHIMKDINNGWMIRLIHINGASFYFLLMYIHISRNIW 102
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 103 YSSFK--YKDVWFIGITIFFLSMMTAFLGYVLPWGQMSFWGATVITNLVSAIPYIGNMLVNWIWGGYSINNATLNRFYSI 180
Cdd:CHL00070  107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....
gi 2088253771 181 H-FIMPFVILMFVIIHLFFLHLHG 203
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQG 210
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-357 1.79e-23

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 93.31  E-value: 1.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGVTALILSILILFLMSIFKNNISKSNKFNMLGKLYYWFFINNFILLTWL 337
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 2088253771 338 GGKVIELPYTMINETMTLSY 357
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
petD CHL00058
cytochrome b6/f complex subunit IV
 258-290 9.70e-06

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 45.38  E-value: 9.70e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGV 290
Cdd:CHL00058   66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 258-290 1.51e-05

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 44.78  E-value: 1.51e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGV 290
Cdd:COG5679    67 ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-290 5.13e-05

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 43.25  E-value: 5.13e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2088253771 258 ANSMVTPIHIKPEWYFLFAYSILRAIPNKLGGV 290
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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