Conserved domains on
[gi|2127896237|ref|YP_010227142|]
View
Ycf2 (chloroplast) [Eucalyptus silvestris]
Protein Classification
Ycf2( domain architecture ID 11414145)
Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2280 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional : Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4222.39 E-value: 0e+00
|
||||||||||||||||||||||||||||||||||
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2280 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4222.39 E-value: 0e+00
|
||||||||||||||||||||||||||||||||||
| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1480 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2892.05 E-value: 0e+00
|
||||||||||||||||||||||||||||||||||
| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1616-1800 | 4.24e-79 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 258.07 E-value: 4.24e-79
|
||||||||||||||||||||||||||||||||||
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2280 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4222.39 E-value: 0e+00
|
||||||||||||||||||||||||||||||||||
| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1480 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2892.05 E-value: 0e+00
|
||||||||||||||||||||||||||||||||||
| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1616-1800 | 4.24e-79 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 258.07 E-value: 4.24e-79
|
||||||||||||||||||||||||||||||||||
| RecA-like_protease | cd19481 | proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
1617-1800 | 1.15e-10 | ||||||||||||||||||||||||||||||
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 61.92 E-value: 1.15e-10
|
||||||||||||||||||||||||||||||||||
| AAA | pfam00004 | ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
1630-1789 | 1.58e-08 | ||||||||||||||||||||||||||||||
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 54.91 E-value: 1.58e-08
|
||||||||||||||||||||||||||||||||||
| RecA-like_CDC48_r2-like | cd19511 | second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
1614-1798 | 2.15e-05 | ||||||||||||||||||||||||||||||
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 46.89 E-value: 2.15e-05
|
||||||||||||||||||||||||||||||||||
| RecA-like_PAN_like | cd19502 | proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
1621-1800 | 3.27e-03 | ||||||||||||||||||||||||||||||
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 40.78 E-value: 3.27e-03
|
||||||||||||||||||||||||||||||||||
| Blast search parameters | ||||
|
