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Conserved domains on  [gi|2172617214|ref|YP_010238455|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Turdus dissimilis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 5.55e-179

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 499.35  E-value: 5.55e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                         330       340
                  ....*....|....*....|....*.
gi 2172617214 321 VSPLVAILTSTSLILLPISPMILAIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 5.55e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 499.35  E-value: 5.55e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                         330       340
                  ....*....|....*....|....*.
gi 2172617214 321 VSPLVAILTSTSLILLPISPMILAIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
14-298 1.07e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.86  E-value: 1.07e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  90 ---TCPTSCLILTAAIAM-------KLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLFLMTSQSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 153 PLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLAL--LNFYL--YVVMTAAVFLTLNSIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2172617214 224 TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 4.27e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.87  E-value: 4.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  23 SNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  91 CPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLL-STAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSPfiqqiLLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 165 GGWMGLNQTQVRKILAFSSISHLGWMTAIL----VYSPKLALLNFYLYVVMTAAVFLTLNSI-----KTLNLSMLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2172617214 236 KTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-336 1.87e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.96  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLT-- 90
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  91 ----------CPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLFLMTSQSLNPTPLIA 156
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 157 MAILSAA---LGGWMGLNQTQVRKILAFSSISHLGW----MTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIK------ 223
Cdd:TIGR01770 272 LAIIAFLsmlIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRsykdew 351
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 224 TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATIT 303
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFD 431
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2172617214 304 LPPhstnhmkRWHINKPVSPLVAILTSTSLILL 336
Cdd:TIGR01770 432 KPE-------RRIPSNPQSKAQSLLLSISALFI 457
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 5.55e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 499.35  E-value: 5.55e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                         330       340
                  ....*....|....*....|....*.
gi 2172617214 321 VSPLVAILTSTSLILLPISPMILAIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-346 1.21e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 414.97  E-value: 1.21e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSlNPTPLIAMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRW--HIN 318
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319
                         330       340
                  ....*....|....*....|....*...
gi 2172617214 319 KPVSPLvAILTSTSLILLPISPMILAIV 346
Cdd:MTH00135  320 QLTLPL-AISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-345 6.66e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 410.47  E-value: 6.66e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
                         330       340
                  ....*....|....*....|....*
gi 2172617214 321 VSPLVAILTSTSLILLPISPMILAI 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-343 3.67e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 368.02  E-value: 3.67e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPhSTNHMK-RWHINK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319
                         330       340
                  ....*....|....*....|....*
gi 2172617214 320 P-VSPLVAILTSTSLILLPISPMIL 343
Cdd:MTH00105  320 TkPMTLLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-345 1.15e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 315.75  E-value: 1.15e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 TGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
                         330       340
                  ....*....|....*....|....*
gi 2172617214 321 VSPLVAILTSTSLILLPISPMILAI 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
12-336 5.68e-90

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 273.34  E-value: 5.68e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  12 SLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLTC 91
Cdd:MTH00041   12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  92 PTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAILSAALGGWMGLN 171
Cdd:MTH00041   92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 172 QTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPALSAMLMLTLLSL 251
Cdd:MTH00041  172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 252 AGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATITLPPHSTNHMKRWHINKPVSPLVAILTST 331
Cdd:MTH00041  252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSIL 331

                  ....*
gi 2172617214 332 SLILL 336
Cdd:MTH00041  332 SSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-343 1.26e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 210.45  E-value: 1.26e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   1 MNPQAKLICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  81 tgqwdITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNptpLIAMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNF---IIIIIIL 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 241 SAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCAtITLPPHSTNHMKRWHINKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311
                         330       340
                  ....*....|....*....|...
gi 2172617214 321 VSPLVaILTSTSLILLPISPMIL 343
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLLF 333
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
12-310 1.75e-53

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 178.82  E-value: 1.75e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  12 SLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSmtnawyTGQWDITQLTC 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  92 PTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLfLMTSQSLNPTPLI-AMAILSAALGGWMGL 170
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSI-LFFFTSHNILPMMtSMAAMSALAGGLGGM 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 171 NQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPALSAMLMLTLLS 250
Cdd:MTH00011  167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 251 LAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYcATITLPPHSTN 310
Cdd:MTH00011  247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
13-302 1.09e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 176.62  E-value: 1.09e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  13 LILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITqltcp 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  93 tscLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNP-TPLIAMAILSAALGGWMGLN 171
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 172 QTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIKTLNLSMLmtTWTKTPALSAML-MLTLLS 250
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGLSiISLLLS 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2172617214 251 LAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATI 302
Cdd:MTH00144  243 LGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
12-298 1.23e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.21  E-value: 1.23e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  12 SLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAwytgqwdITQLTC 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLS 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  92 PTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPitLFLMTSQSLNPTPLIAMAILSAALGGWMGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 172 QTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVMTAAVFLTLNSiKTLNLSMLMTTWTKTPALSAM-LMLTLLS 250
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSK-NNLSSLNQQYSNPESMSSNLVfLGLSFLS 235
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2172617214 251 LAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAY 298
Cdd:MTH00197  236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
14-298 1.07e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.86  E-value: 1.07e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  90 ---TCPTSCLILTAAIAM-------KLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLFLMTSQSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 153 PLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLAL--LNFYL--YVVMTAAVFLTLNSIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2172617214 224 TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 3.69e-30

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 119.54  E-value: 3.69e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLTCP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  93 TS------------CLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK---FPPIT-LFLMTSQSLNPT---P 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 154 LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLAL--LNFYL--YVVMTAAVFLTLNSIKTLN--- 226
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKGgea 352
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2172617214 227 -----LSMLMTTwtkTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRL 296
Cdd:PRK05777  353 esisdFAGLSKR---SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
13-296 9.30e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 113.97  E-value: 9.30e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  13 LILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  79 WYTGQWDITQLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAmkfPPITLF-LMTSQSLNPTPLIAM 157
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIV---PKLGIFsILVSIGLNVNILLIG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 158 AILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVY----SPKLALLNFYLYVVMTAAVF---LTLNSIKTL----- 225
Cdd:MTH00196  159 GLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKNLiiefs 238
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2172617214 226 NLSMLMttwtktPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRL 296
Cdd:MTH00196  239 GLSRRL------PILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 4.27e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.87  E-value: 4.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  23 SNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  91 CPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLL-STAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSPfiqqiLLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 165 GGWMGLNQTQVRKILAFSSISHLGWMTAIL----VYSPKLALLNFYLYVVMTAAVFLTLNSI-----KTLNLSMLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2172617214 236 KTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-336 1.87e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.96  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLT-- 90
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  91 ----------CPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLFLMTSQSLNPTPLIA 156
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 157 MAILSAA---LGGWMGLNQTQVRKILAFSSISHLGW----MTAILVYSPKLALLNFYLYVVMTAAVFLTLNSIK------ 223
Cdd:TIGR01770 272 LAIIAFLsmlIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRsykdew 351
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 224 TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAYCATIT 303
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFD 431
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2172617214 304 LPPhstnhmkRWHINKPVSPLVAILTSTSLILL 336
Cdd:TIGR01770 432 KPE-------RRIPSNPQSKAQSLLLSISALFI 457
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
13-267 2.34e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 108.95  E-value: 2.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  13 LILGSTITLSSNHWVTAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  88 QLTCPTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAmkfPPITLFLMTSQ-SLNPTPLIAMAILSAALGG 166
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATV---PKIGVFSILVQiGPVTNVVLICAVLSIIYGA 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 167 WMGLNQTQVRKILAFSSISHLG---WMTAILVY-SPKLALLNFYLYVVMTAAVF---LTLNSIKTLnLSMLMTTWTKTPA 239
Cdd:MTH00199  263 IGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPV 341
                         250       260
                  ....*....|....*....|....*...
gi 2172617214 240 LSAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  342 IALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
13-296 9.24e-26

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 106.77  E-value: 9.24e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  13 LILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLTC- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  92 ---------PTSCLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP--------L 154
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADpalflgtlL 275
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 155 IAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVV----MTAAVFLTLNSI----KTLN 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAAGAIeratGTRD 355
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 227 LSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRL 296
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
15-302 1.12e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 89.92  E-value: 1.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  15 LGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAI---------EAATKYFLVQAAASALILFSSMTNAWYTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  84 --WDITQLTCPTS----------CLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFppITLFLMTSQSLNP 151
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 152 TPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLY-VVMTAAVFLTLNSIKTLN---- 226
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYaVTYLVSALASFTVICTLEefgt 436
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 227 --------------------LSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLS 286
Cdd:MTH00198  437 rtptsrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516
                         330       340
                  ....*....|....*....|...
gi 2172617214 287 LLNL-------FFYLRLAycATI 302
Cdd:MTH00198  517 LFAIictcisaFYYIRIV--ATI 537
ndhB CHL00049
NADH dehydrogenase subunit 2
7-327 5.02e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 75.81  E-value: 5.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214   7 LICTMSLILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHP-RAIEAATKYFLVQAAASALIL--FSsmtnaWYTGQ 83
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  84 -------WDI------TQLTCPTSCLI----LTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLF---- 142
Cdd:CHL00049  189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALAtrif 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 143 -LMTSQSLNPTPLIA--MAILSAALGGWMGLNQTQVRKILAFSSISHLGW-MTAILV------YSPKLALLNFYLYVVMT 212
Cdd:CHL00049  269 dIPFYFSSNEWHLLLeiLAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVgdsndgYASMITYMLFYIFMNLG 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 213 AAVFLTLNSIKT--LNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNL 290
Cdd:CHL00049  349 TFACIVLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISI 428
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2172617214 291 FFYLRLAYCATITLPPHSTNHMKrwhiNKPVSPLVAI 327
Cdd:CHL00049  429 YYYLKIIKLLMTGRNQEITPYVR----NYRRSPLRSN 461
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.26e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 74.70  E-value: 1.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  50 PRAIEAATKYFLVQAAASALILF-SSMTNAWYTGQwdiTQL--------TCPTSCLILT-----AAIAMKLGLAPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 116 PEVLQGCSLTTGLLLSTAMK---FPPITLFLMTSQSLNPTP----LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEQwkllFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 189 WMTAILV------YSPKLALLNFYLYVVMTAAVFLTLNSIKTLN--LSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGF 260
Cdd:PRK02504  314 FVMIGLVagteagYASMVFYLLAYLFMNLGAFACVILFSLRTGTdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393

                  ...
gi 2172617214 261 LPK 263
Cdd:PRK02504  394 FGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
49-288 9.26e-14

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 72.04  E-value: 9.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  49 HPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQW-----DITQLTCPTS-----CLILTAAIAMKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 119 LQGCSLTTGLLLSTAM---------KFPpITLFLMTSQSLNPtPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGW 189
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 190 MT-AILVYSPkLALLNFYLYVV----MTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGF 260
Cdd:COG1008   314 VLlGIFALNP-LGLQGAVLQMVshglITAALFLLVGVLydrtHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGF 392
                         250       260
                  ....*....|....*....|....*...
gi 2172617214 261 LPKWLIIQELTKQSmaPAATIMALLSLL 288
Cdd:COG1008   393 VGEFLVLLGAFQVN--PWLAILAALGLI 418
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-266 1.71e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 71.28  E-value: 1.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  33 LEINTLAILPLIA-KSHHPRAIEAATKYFLVQAAASALILFS---------SMTNAWYTGQWDITQLTCPTSCL-ILTAA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 102 IAMKLGLAPFHFWFPEVLQGC--SLTTGLLLSTAMKFPPI--TLFLMTSQSLNPTPL----IAMAILSAALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALarVLFSIYGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 174 QVRKILAFSSISHLGWM-----TAILVYSPKL-----------ALLNFYLYVVMTAAVFLT----LNSIKTLNLSMLMTT 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgVGLAALGDPAmasygeialagGIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2172617214 234 WTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-298 2.28e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 70.68  E-value: 2.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  33 LEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLT--CPTSCLILTA------AIAM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTAfgfvllALAL 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 105 KLGLAPFHFWFPEVLQGCSLTTGLLLS-TAMK----------FPPITLFLMTSQSLNpTPLIAMAILSAALGGWMGLNQT 173
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQD 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 174 QVRKILAFSSISHLGWMTAILVYSPKLALLN--FYL--YVVMTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLM 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAFA 373
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2172617214 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAY 298
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-298 3.76e-11

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 63.90  E-value: 3.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  34 EINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQ-----LTCPTSCLILTAAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 109 A------PFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP--------LIAMAILSAALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGLSyfpsaqgvLIALSVLAMVFGVVMALLQTD 289
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 175 VRKILAFSSISHLGWMTAILV----YSPKLALLNFYLYVVMTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLML 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLAlgtpLGIVAGIFHAINHVIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2172617214 247 TLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRLAY 298
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
50-268 5.73e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 63.42  E-value: 5.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  50 PRAIEAATKYFLVQAAASALILFSSMTNAWYTGQW----DITQLTCPTSC-----LILTAAIAMKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 119 ---LQGCSLTTGLLLSTA----MKFpPITLFLMTSQSLNPtPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 192 AILVYSPKLALLNFYLYVV----MTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMIshglITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389

                  ....*
gi 2172617214 264 WLIIQ 268
Cdd:TIGR01972 390 FLILL 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
23-291 5.22e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 60.78  E-value: 5.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  23 SNHWVTAWTGLEINTLAILPLIAKSHHpRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQ----LTCPTS---- 94
Cdd:PRK08668  117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfa 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  95 ---CLILTAAIAMKLGLAPFHFWFPE-----------VLQGCSLTTG---LLLSTAMkFPPITLFL-MTSQSLNPTP--- 153
Cdd:PRK08668  196 livFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-LPGTKLFSeFGTYRGVPLFnyi 274
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 154 LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWmtaILV-------YSPKLALLNFYLYVVMTAAVFLTLNSI---- 222
Cdd:PRK08668  275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVglglgtsLGFAGGLFHVFNHALFKGLFFLIFAAViyrt 351
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2172617214 223 KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSM---APAATIMALLSLLNLF 291
Cdd:PRK08668  352 GTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMpitAFMAFFGSIGSFLYVF 423
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
96-263 1.73e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 59.17  E-value: 1.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  96 LILTAAIAmKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAALGGWMGL 170
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVPvwrptVLVLGLATMLLGGWRAL 286
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 171 NQTQVRKILAFSSISHLGWMTAILVY-SPKLALLNFYLYV---VMTAAVFLTLNSIK----TLNLSMLMTTWTKTPALSA 242
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAALFLVVGIIDhstgTRDIRKLSGLGRRQPVLAV 366
                         170       180
                  ....*....|....*....|.
gi 2172617214 243 MLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  367 VAALAAASMAGLPPLLGFVAK 387
PRK12650 PRK12650
DUF4040 family protein;
98-304 2.23e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 58.90  E-value: 2.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  98 LTAAIAMKLGLA--------PFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAAL 164
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAvwnwlLIIVGMITALM 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 165 GGWMGLNQTQVRKILAFSSISHLGWMTA-ILVYSP---KLALLNFYLYVVMTAAVFLTLNSIK----TLNLSMLMTTWTK 236
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVAtIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRR 365
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2172617214 237 TPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELtKQSMAPAATIMALLSLLNLFFYLRLAYCATITL 304
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAF-LEAPGGNAGVVLLLVGAALGAVFTFAYSARLVL 432
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
48-298 2.67e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 58.24  E-value: 2.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  48 HHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQL-----TCPTSCLILTAAIAM------KLGLAPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 117 EVLQGCSLTTGLLLSTAM---------KFPPItlFLMTSQSLnpTPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHL 187
Cdd:COG1009   236 DAMEGPTPVSALLHAATMvkagvyllaRLSPL--FALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQL 311
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 188 GWMTAILVYSpklallnfylyvVMTAAVFLTLN-------------SI----KTLNLSMLMTTWTKTPALSAMLMLTLLS 250
Cdd:COG1009   312 GYMFLALGVG------------AYVAALFHLLThaffkallflgagSVihatGTRDIRKMGGLRKKMPITAITFLIGALS 379
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2172617214 251 LAGLPPLTGFLPKWLIIQE-LTKQSMAPAATIMALL-SLLNLFFYLRLAY 298
Cdd:COG1009   380 LAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRLFF 429
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-271 7.69e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 53.80  E-value: 7.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  33 LEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQLTC--PTSCLILTAAIAMKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 111 FHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLFLMTSQSLNPTPLIAmaILSAALGGWMGLNQTQVRKILAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLIVRIFG--VGTALLGVLFALLEKDLKRMLAFSTISQ 280
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 187 LGWMTAILVYSPKLALlnfyLYVVMTAAVFLTLNSIKTLNLSMLMTTWTKTPALSAMLMLTlLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07234  281 LGFILAAPLVGGLYAL----AHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMAS-FSIAGFPLLAGFVSKVLT 355

                  ....*
gi 2172617214 267 IQELT 271
Cdd:PRK07234  356 LKNLL 360
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
43-267 1.84e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.51  E-value: 1.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  43 LIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWY----TGQWDITQL---TCPTSCLILT-----AAIAMKLGLAP 110
Cdd:PRK05846  150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlnlPLPPGVQYWLflaffIAFAVKMPMFP 229
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 111 FHFWFPEVLQ-----GCSLTTGLLLSTA----MKFPpITLFLMTSQSLNPtPLIAMAILSAALGGWMGLNQTQVRKILAF 181
Cdd:PRK05846  230 LHTWLPDAHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAY 307
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 182 SSISHLGWMTAILVYSPKLALLNFYLYVV----MTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAG 253
Cdd:PRK05846  308 SSISHMGFVTLGIFAGNQLGIQGAIFQMIshglSSAALFLLVGVLydrlHTRDIADYGGLAKVMPVLAAFFLFFAMASLG 387
                         250
                  ....*....|....
gi 2172617214 254 LPPLTGFLPKWLII 267
Cdd:PRK05846  388 LPGTSGFVGEFLIL 401
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
20-285 2.27e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  20 TLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASALILFSS----------MTNAWYTGQWdiTQL 89
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILW--TEL 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  90 TCPTSCL---ILTAAIAM-------KLGLAPFHFWFPEV-LQGCS----LTTGLLLSTAMkFPPITLFLMTSQSLNPTP- 153
Cdd:PRK06458  202 LKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSpvsaLLSGVLLNVAL-YAVLRYYILIDAAIGSDFp 280
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 154 ---LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVVM----TAAVFLT----LNSI 222
Cdd:PRK06458  281 grlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFAsgnvLQKY 360
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2172617214 223 KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALL 285
Cdd:PRK06458  361 GTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLL 423
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
33-267 6.09e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 50.74  E-value: 6.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  33 LEINTLAILPLIAKSHHPRAIEAATKYFLVQAAAS------ALILFSSMTNAWYTGQWDITQLTCPTSCLILTAAIAMKL 106
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 107 GLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP------LIAMAILSAALGGWMGLNQTQVRKILA 180
Cdd:PRK06525  222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIPhvigyvGAVMAIVTLLYGFLMYLPQQDMKRLLA 301
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 181 FSSISHLGWM---TAILVYSPKLALLNFYLYVVMTAAV----FLTLNSIK----TLNLSMLMTTWTKTPALSAMLMLTLL 249
Cdd:PRK06525  302 YSTITQLGYMffgLSLAILGSRLALEGSIAYIFNHAFAkslfFLVAGALSyscgTRLLPRLRGVLKKLPLVGVGFCVAAL 381
                         250
                  ....*....|....*...
gi 2172617214 250 SLAGLPPLTGFLPKWLII 267
Cdd:PRK06525  382 AITGVPPFNGFFSKFPIF 399
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
291-340 8.99e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 45.33  E-value: 8.99e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2172617214 291 FFYLRLAYCATITLPPHSTNHMKRWHINKPV-SPLVAILTSTSLILLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-266 9.74e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.69  E-value: 9.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 110 PFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPL--IAMAILSAA---LGGWMGLNQTQVRKILAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYSTV 292
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 185 SHLGWMTAILVYSPKLALLNFYLYVVM----TAAVFLTLNSIK----TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPP 256
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372
                         170
                  ....*....|
gi 2172617214 257 LTGFLPKWLI 266
Cdd:PRK12647  373 LFGFLAKELI 382
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
95-316 1.46e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 49.69  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  95 CLILTAAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAI-----LSAALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 170 LNQTQVRKILAFSSISHLGWMTAIL-VYSPKLALLNFYLYVVMTAAVFLTLNS-IKTLNLSMLMTtwtKTPALSAMLMLT 247
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSvIHALSDEQDMR---KMGGLISFLPLT 369
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2172617214 248 L-------LSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLS-LLNLFFYLRLAYCATITLPPHSTNHMKRWH 316
Cdd:MTH00020  370 YiffligsLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNLKKAVFFHLH 446
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
105-268 6.04e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 48.03  E-value: 6.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 105 KLGLapfHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAI-----LSAALGGWMGLNQTQVRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 180 AFSSISHLGWMTAILVY--SPKLALLNFYLYVVMTAAVFLTLNSI------KTLNLSMLMTTWTKTPALSAMLMLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397
                         170
                  ....*....|....*..
gi 2172617214 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
154-267 6.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.81  E-value: 6.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 154 LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVV----MTAAVFLTLNSIK----TL 225
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTT 361
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2172617214 226 NLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
48-263 8.94e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 47.52  E-value: 8.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  48 HHPRAIEAATKYFLVQAAASALILFSSMTNAWYTGQWDITQ---------------LTCPTSCLILTAAiAMKLGLAPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATilqdselienikghpLFLITLILIFIGA-AAKSAQGPFY 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 113 FWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAALGGWMGLNQTQVRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEawfilVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 188 GWMTAILVYSPK------LALLNFYL--YVVMTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLP 255
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVaheaATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394

                  ....*...
gi 2172617214 256 PLTGFLPK 263
Cdd:PRK12649  395 PLNGFLSK 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
11-300 9.37e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.12  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  11 MSLILGSTITLSSNhWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAASAL-------ILFSSMTNAWYTGQ 83
Cdd:PRK06589  124 LTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLlflpaviLIYTKTGNLDFVSG 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  84 WDITQLTCPTSCLILTAAIAmKLGLAPFHFWFPEVLQG----CSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAM-- 157
Cdd:PRK06589  203 GLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEfn 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 158 -----AILSAALGGWMGLNQTQVRKILAFSSISHLGW--MTAILVYSPKLALLNFYL--YVVMTAAVFLTLNSIKTLN-- 226
Cdd:PRK06589  282 wlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSMGSIYSLKke 361
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 227 --LSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALL----SLLNLFFYLRLAYCA 300
Cdd:PRK06589  362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSSI 441
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
153-298 3.05e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.71  E-value: 3.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 153 PLIA-MAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAilvyspKLALLN--------FYLY---VVMTAaVFLTLN 220
Cdd:PRK12663  273 PLLAtMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILL------GLALGTpagingaiFYLVhdmVVKTA-LFLIAG 345
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 221 SIKTL----NLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQ---ELTKQSMAPAATIMALLSLLNLFFY 293
Cdd:PRK12663  346 SLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgalDNGAYILLALMLITSLITMYSLFRI 425

                  ....*
gi 2172617214 294 LRLAY 298
Cdd:PRK12663  426 FFLAY 430
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
13-287 3.36e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  13 LILGSTITLSSNHWVTAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLVQAAA------SALILFSSMTNAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  87 TQLTCPTSCL---ILTAA-------IAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP--- 153
Cdd:PRK08676  191 TELAAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGaae 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 154 -----LIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWM-TAILVYSPkLALLNFYLYVVMTAAVFLTL-------- 219
Cdd:PRK08676  271 qfsnvLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMlLGIGIGTP-LALFWMLFHMLAHSLVKSGLffsagilh 349
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2172617214 220 NSIKTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSL 287
Cdd:PRK08676  350 RQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLL 417
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
103-296 4.54e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.94  E-value: 4.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 103 AMKLGLAPFHFWFPE----------VLQGCSLTTGLLLSTAMKFppiTLFLMTSQSLNPTPLIAMAILSAALGGWMGLNQ 172
Cdd:PRK07691  220 ATKAGLFPLYFWLPGsyyappiaiaALFGALLTKVGVYAIARTF---TLFFSHDTSFTHYLILILALLTIIFGVIGAVAY 296
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 173 TQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLY----VVMTAAVFL----TLNSIKTLNLSMLMTTWTKTPALSAML 244
Cdd:PRK07691  297 FDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYlihdMIVKAALFLligiMIKITGTTDLKKMGGLIKRYPVLGWMF 376
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2172617214 245 MLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSLLNLFFYLRL 296
Cdd:PRK07691  377 FIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
164-286 1.11e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 44.03  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 164 LGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLnfylyvvmtAAVFLTLNSiKTLNLSMLMTT---------- 233
Cdd:PRK12648  284 LGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAV---------AAIFHIINH-ATFKASLFMAAgiidhetgtr 353
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2172617214 234 --------WTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAP--------AATIMALLS 286
Cdd:PRK12648  354 dmrrlsglRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFAETLDTHLLGsldwllpvAATLAGAFS 422
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
96-298 1.27e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 43.87  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  96 LILTAAIAmKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTPLIAMAILSAA-----LGGWMGL 170
Cdd:MTH00209  180 LIVLAAMT-KSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFFSMSLLLLGslttlMASMSAN 258
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 171 NQTQVRKILAFSSISHLGWMTAILVY-SPKLALLNFYLYVVMTAAVFLTLNSI-----KTLNLSMLMTTWTKTPALSAML 244
Cdd:MTH00209  259 VESDLKKIIALSTLSQLGLMMCSLGLnQPELAFFHLITHALFKALLFICAGNIihshgHSQDIRMVGNLWYQMPITSICL 338
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2172617214 245 MLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPAATIMALLSL-LNLFFYLRLAY 298
Cdd:MTH00209  339 NIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSY 393
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
14-274 1.55e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.63  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  14 ILGSTITLSSNHWVT---AWTGLEINTLAILPLIAKSHHPraieaATKYFLVQAAASALILFSSMTNAWYTGQWDITQLT 90
Cdd:PRK06459   82 ILGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRP-----AFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLP 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  91 CPTSCLILTAAIAMKLGLAPFHF--WFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP-------LIAMAILS 161
Cdd:PRK06459  157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPigyfgltILAIGAFS 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 162 AALGGWMGLNQTQVRKILAFSSISHLGWMTA-----ILVYSPKLALLNFYLYVVMTAA---------VFLTLNSIKTLNL 227
Cdd:PRK06459  237 ILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGLQEKQSI 316
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2172617214 228 SMLMTTWTKTPALSAMLMLtlLSLAGLPPLTGFLPKWLIIQELTKQS 274
Cdd:PRK06459  317 TYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESLFMFA 361
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
55-270 2.60e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  55 AATKYFLVQAAASALILFSSMTNAWYTGQWDITQLTCPT-----SCLILTAAIAMKLGLAPFHFWFPEVLQGC-----SL 124
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASpsnvsAL 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 125 TTGLLLSTAM-KFPPITLFLMTSQSLNPTPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGW-MTAILVY------ 196
Cdd:PRK08667  243 MSGVMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIiLMGIGLYvifgvy 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 197 -SPKLALLNF-------YLYVVMTAAVFLTLNSI----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  323 gLDTLALLALggalfhsLNHALFKSLLFLTAGSVvhatGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402

                  ....*.
gi 2172617214 265 LIIQEL 270
Cdd:PRK08667  403 LLYESF 408
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
101-267 2.64e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 101 AIAMKLGLAPFHFWFPEV-----LQGCSLTTGLLLSTA------MKFPPITLflmTSQSLNPTpLIAMAILSAALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWPILPL---GAQNLAPA-VIAMGIVGIVYGSFAT 314
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 170 LNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYV----VMTAAVFLTLNSIKTLNLSMLMTTW----TKTPALS 241
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMlahgIVSSLLFILVTILYDRHHTRLIKYYrglsITMPIWG 394
                         170       180
                  ....*....|....*....|....*.
gi 2172617214 242 AMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226  395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
55-188 3.87e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 3.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  55 AATKYFLVQAAASALILFSSMTNAWYTGQ--WDITQLT-----------CPTSCLIltaAIAMKLGLAPFHFWFPE---- 117
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksyplalellLYAGFLI---AFGVKLPIFPLHTWLPDahge 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 118 -------VLQGCSLTTG----------LLLSTAMKFPPItlflmtsqslnptpLIAMAILSAALGGWMGLNQTQVRKILA 180
Cdd:PRK12561  215 asapvsmILAGVLLKMGgyalirfnvqMLPDAHVYFAPA--------------LAILGVVNIIYGALNAFAQDNVKRRLA 280

                  ....*...
gi 2172617214 181 FSSISHLG 188
Cdd:PRK12561  281 YSSVSHMG 288
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
43-266 3.99e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.99  E-value: 3.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  43 LIAKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWYTG-------QWDITQLTCPTSCLILTA---AIAMKLGLAPFH 112
Cdd:PRK06473  146 LIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFH 225
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 113 FWFPEVLQGCS-----LTTGLLLSTA----MKFPpITLFLMTSQSLNPTpLIAMAILSAALGGWMGLNQTQVRKILAFSS 183
Cdd:PRK06473  226 TWLPDAHVEAStpvsvLLAGVLLKLGtyglLRFG-VGLFPEAWVYLAPW-LATWAVVSVLYGASCAIAQKDMKKMVAYSS 303
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 184 ISHLGWMTAILVYSPKLALLNFYLYVV----MTAAVFLTLNSI--KTLN-----LSMLMTTWTKTPALSAMLMLTLLSLA 252
Cdd:PRK06473  304 IGHMGYILLAAAAATPLSILAAVFQMIshglISALLFLLVGVVykKTGSrdvdvLRGLLNPERGLPITGSLMILGVMASA 383
                         250
                  ....*....|....
gi 2172617214 253 GLPPLTGFLPKWLI 266
Cdd:PRK06473  384 GIPGMVGFIAEFLV 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.24e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.01  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  55 AATKYFLVQAAASALILFSSMTNAWYTGQWD------ITQ-LTCPTSCLILTAAI---AMKLGLAPFHFWFPEVLQGCSL 124
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 125 TTGLLLSTAM---------KFPpITLFLMTSQSLNPTPLIAMAIlSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILV 195
Cdd:PRK07363  238 AVAILLGGVLaklgtygllRFG-LQLFPQTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAA 315
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 196 YSPKLALLN---------------FYLYVVMTAAVfltlnSIKTLN-LSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTG 259
Cdd:PRK07363  316 AGTQLSLLGavaqmishglilallFHLVGIVERKV-----GTRDLDvLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVG 390

                  ....*....
gi 2172617214 260 FLPKWLIIQ 268
Cdd:PRK07363  391 FVAEFIVFQ 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
143-268 6.58e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.49  E-value: 6.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 143 LMTSQSLNpTPLIAMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYSPKLALLNFYLYVV----MTAAVFLT 218
Cdd:PRK12665  266 LFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAhhitVQTTLFLV 344
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2172617214 219 LNSIK----TLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  345 VGLIErqagSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
105-303 3.24e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.22  E-value: 3.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 105 KLGLapfHFWFPEVLQGCSLTTGLLLSTAMKFPPITLfLMTSQSL---NPTPLIAMAI---LSAALGGWMGLNQTQVRKI 178
Cdd:MTH00210  227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFL-IIRSGPLfegSPLALTIVTIlgaLTAFFAATVGVVQNDLKKV 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 179 LAFSSISHLGWMT---AILVYSPKL-ALLNfylYVVMTAAVFLTLNS-IKTLNLSMLMTTW----TKTPALSAMLMLTLL 249
Cdd:MTH00210  303 IAYSTCSQLGYMVmvcGISNYSTSLfHLMN---HAFFKALLFLSAGSvIHAVSDEQDMRKMggliKSIPFTYVMILIGSL 379
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2172617214 250 SLAGLPPLTGFLPKWLIIqELT--KQSMAPAATIMALLSLLNLFFYLRLAYCATIT 303
Cdd:MTH00210  380 SLMGFPYLTGFYSKDLIL-ELTydKYYIAFAYWLGSFSALLTAFYSIRLIYLTFIT 434
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
59-267 3.49e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 39.16  E-value: 3.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214  59 YFLVQAAASALILFSSMTNAWYTGQWDITQLtcPTSCLILtaAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPP 138
Cdd:MTH00211  175 IGLLLSMVWLLLNLNSWEISQLFILNLDLTL--FLLGLLL--AAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAG 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 139 ITLFLMTSQSLNPTPLIAMAIL-----SAALGGWMGLNQTQVRKILAFSSISHLGWM-TAILVYSPKLALLNFYLYVVMT 212
Cdd:MTH00211  251 VFLLIRLSPLFQNNQLILGAVLllgalTMLFGALCALTQNDIKKIVAFSTTSQLGLMmVTLGLNQPQLAFLHICTHAFFK 330
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2172617214 213 AAVFLTLNSI-------------KTLNLSMLMTtwtktpalSAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00211  331 AMLFMCSGSIihglnneqdirkmGGLSKNLPFT--------SSCLFLGSLALMGFPFLSGFFSKDLIL 390
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
142-268 3.87e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.98  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 142 FLMTSQSLNPTPLIaMAILSAALGGWMGLNQTQVRKILAFSSISHLGWMTAILVYS-PKLALLNFYLYVVMTAAVFLTLN 220
Cdd:MTH00207  235 FLSSTYWFNPALLL-TASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAG 313
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2172617214 221 SI-----KTLNLSMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  314 SLihshhHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK12646 PRK12646
DUF4040 family protein;
110-272 4.78e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.97  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 110 PFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLFLMTSQSLNPTP-----LIAMAILSAALGGWMGLNQTQVRKILAFSSI 184
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNmyiyiVTFVGLITMLFGSITALKQWDLKGILAYSTI 307
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 185 SHLGWMTAI------LVYSPKLALLNFYLYVVMTA------------AVFLTLNSIK----TLNLSMLMTTWTKTPALSA 242
Cdd:PRK12646  308 SQLGMIMAMvgigggYAQHQQDAIASIYVFVLFAAlfhlmnhaifkcALFMGVGIIDheagTRDIRILSGMRQLFPKMNL 387
                         170       180       190
                  ....*....|....*....|....*....|
gi 2172617214 243 MLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
107-278 5.36e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 38.65  E-value: 5.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 107 GLAPFHFWFPEVLQGCSLTTGLLLSTA-MKFPPITLFLMTSQSLNP-----TPLIAMAILSAALGGWMGLNQTQVRKILA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYALMEHNIQRLLA 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 181 FSSISHLG--------WMTAILVYSPKLALLNFY--LYVVMT-----AAVFLTLNSI----KTLNLSMLMTTWTKTPALS 241
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNhslfkSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2172617214 242 AMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQSMAPA 278
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGA 391
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
104-272 7.30e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.54  E-value: 7.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 104 MKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPiTLFLMTSQSLNPTPLIAMAILSAALGGWMGLNqtqVRKILAFSS 183
Cdd:MTH00091   69 MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPF-LLVLLQFFSKNFFFLLLFGLLICFFQMFLLKS---YKNLLILSS 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172617214 184 ISHLGWMTAILVYS-PKLALLNFYLYVVMTaavfltlnsiktlnlsMLMTTWTKTPALSAMLMLTLLSLAGLPPLTGFLP 262
Cdd:MTH00091  145 TESFNWLILSFFFSfFNVFFLFFYYFLLML----------------FLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFV 208
                         170
                  ....*....|
gi 2172617214 263 KWLIIQELTK 272
Cdd:MTH00091  209 KIFSLSEILK 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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