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Conserved domains on  [gi|2235262027|ref|YP_010372552|]
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ribosomal protein S19 (mitochondrion) [Myagropsis myagroides]

Protein Classification

uS19 family ribosomal protein( domain architecture ID 344)

uS19 family ribosomal protein such as bacteria 30S ribosomal protein s19, chloroplast 30S ribosomal protein S19, and human 40S ribosomal protein S15

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsS super family cl00350
30S ribosomal protein S19; Reviewed
 1-80 9.74e-25

30S ribosomal protein S19; Reviewed


The actual alignment was detected with superfamily member TIGR01050:

Pssm-ID: 469734  Cd Length: 92  Bit Score: 88.19  E-value: 9.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKP 75
Cdd:TIGR01050  1 MSRSLKKGPFVDHHLLKkveklNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTF 80


                 ....*
gi 2235262027 76 PSQKK 80
Cdd:TIGR01050 81 KGHAK 85
 
Name Accession Description Interval E-value
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 1-80 9.74e-25

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 88.19  E-value: 9.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKP 75
Cdd:TIGR01050  1 MSRSLKKGPFVDHHLLKkveklNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTF 80


                 ....*
gi 2235262027 76 PSQKK 80
Cdd:TIGR01050 81 KGHAK 85
Ribosomal_S19 pfam00203
Ribosomal protein S19;
4-77 1.50e-24

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 87.07  E-value: 1.50e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2235262027  4 SNWKTPFIDKSLL-----TNFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKPPS 77
Cdd:pfam00203  1 SLKKGPFVDHKLLkkvrkAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVG 79
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 1-74 4.13e-24

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 86.66  E-value: 4.13e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRK 74
Cdd:COG0185    1 MRRSLKKGPFVDEKLLKkvekaNESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRT 79
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 1-73 1.43e-23

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 85.23  E-value: 1.43e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTR 73
Cdd:PRK00357   1 MARSLKKGPFVDGHLLKkvekaNESGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
 
Name Accession Description Interval E-value
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 1-80 9.74e-25

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 88.19  E-value: 9.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKP 75
Cdd:TIGR01050  1 MSRSLKKGPFVDHHLLKkveklNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTF 80


                 ....*
gi 2235262027 76 PSQKK 80
Cdd:TIGR01050 81 KGHAK 85
Ribosomal_S19 pfam00203
Ribosomal protein S19;
4-77 1.50e-24

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 87.07  E-value: 1.50e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2235262027  4 SNWKTPFIDKSLL-----TNFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKPPS 77
Cdd:pfam00203  1 SLKKGPFVDHKLLkkvrkAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVG 79
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 1-74 4.13e-24

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 86.66  E-value: 4.13e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRK 74
Cdd:COG0185    1 MRRSLKKGPFVDEKLLKkvekaNESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRT 79
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 1-73 1.43e-23

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 85.23  E-value: 1.43e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTR 73
Cdd:PRK00357   1 MARSLKKGPFVDGHLLKkvekaNESGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
rps19 CHL00050
ribosomal protein S19
 1-74 1.23e-17

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 69.95  E-value: 1.23e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2235262027  1 MSRSNWKTPFIDKSLLT-----NFSKKKKKKITWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRK 74
Cdd:CHL00050   1 MTRSLKKNPFVANHLLKkieklNTKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRN 79
rps19p PRK04038
30S ribosomal protein S19P; Provisional
 28-74 8.77e-13

30S ribosomal protein S19P; Provisional


Pssm-ID: 235209  Cd Length: 134  Bit Score: 58.72  E-value: 8.77e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2235262027  28 TWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRK 74
Cdd:PRK04038   67 THVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRK 113
uS19_arch TIGR01025
ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal ...
 28-75 1.25e-11

ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal protein uS19 (previously S15) and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273400  Cd Length: 135  Bit Score: 56.01  E-value: 1.25e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2235262027  28 TWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKP 75
Cdd:TIGR01025  68 THCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKP 115
PTZ00096 PTZ00096
40S ribosomal protein S15; Provisional
 31-75 4.31e-11

40S ribosomal protein S15; Provisional


Pssm-ID: 185442  Cd Length: 143  Bit Score: 54.65  E-value: 4.31e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2235262027  31 RRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRKP 75
Cdd:PTZ00096   81 RDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKP 125
PLN03147 PLN03147
ribosomal protein S19; Provisional
 3-74 1.04e-09

ribosomal protein S19; Provisional


Pssm-ID: 178692  Cd Length: 92  Bit Score: 49.98  E-value: 1.04e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2235262027  3 RSNWKTPFIDKSLL---TNFSKKKKKKItWSRRSTIYPVSVGLKLSIYNGKDMLNRKIKPEMVGYKLGEFAPTRK 74
Cdd:PLN03147   1 QAIWKGAFVDAFLArikKKRDLLLGKKI-WSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRK 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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