NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2252659085|ref|YP_010409816|]
View 

cytochrome b (mitochondrion) [Leontocebus fuscicollis weddelli]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 743.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  81 YLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 161 VQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 241 MLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 321 TQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 743.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  81 YLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 161 VQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 241 MLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 321 TQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 2.36e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.44  E-value: 2.36e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNE---------SFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITR 71
Cdd:COG1290     1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  72 DVNYGWMIRYLHANGASMFFICLFLHIGRGLYYGSFlflK-----TWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVI 146
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 147 TNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFTFH-FILPFIIAALATIHLLFLHETGSSNPSG----MTSEPDKISFH 221
Cdd:COG1290   158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 222 PYYTIKDILGLMFLLLLLMMLTLFSPDLltDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALMLSIL 299
Cdd:COG1290   238 PYYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2252659085 300 ILMIIPMMHTSKQQSMTFRPITQTLFWTLVADLMTLTWIGGQPVeyPYVTVGQTASIMYFLIIITLIPLSALIE 373
Cdd:COG1290   316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.54e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.03  E-value: 3.54e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   9 PLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  89 MFFICLFLHIGRGLYYGSF--LFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2252659085 167 GFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSS 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.07e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 259.62  E-value: 2.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  18 FIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  98 IGRGLYYGSF--LFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2252659085 176 TRFFTFHFILPFIIAALATIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-339 1.33e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.34  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHT-SKQQSMTFRPITQTLFwtLVADLMTLtW 337
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF--LFGTVVAL-W 142


                  ..
gi 2252659085 338 IG 339
Cdd:TIGR01156 143 LG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 743.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  81 YLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 161 VQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 241 MLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 321 TQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 671.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  81 YLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 161 VQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLM 240
Cdd:MTH00119  162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 241 MLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPI 320
Cdd:MTH00119  242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 321 TQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00119  322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 669.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  81 YLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 161 VQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLM 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 241 MLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPI 320
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 321 TQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00131  321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 5-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 657.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00074    6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00074   86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00074  166 WGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00074  246 FSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLKW 379
Cdd:MTH00074  326 FWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 5-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 624.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPL 368
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 12-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 603.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  12 KIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00156    2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  92 ICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVD 171
Cdd:MTH00156   82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 172 KATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTLFSPDLLT 251
Cdd:MTH00156  162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 252 DPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTLFWTLVAD 331
Cdd:MTH00156  242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2252659085 332 LMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITL 365
Cdd:MTH00156  322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 588.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSP-RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMI 79
Cdd:MTH00145    1 MLSPlRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  80 RYLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSD 159
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 160 LVQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLL 239
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 240 MMLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRP 319
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2252659085 320 ITQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIItLIPLSALIENKLL 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 5-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 586.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00034    5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00034   85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00034  165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00034  245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLL 377
Cdd:MTH00034  325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 559.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSP-RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMI 79
Cdd:MTH00016    1 MFSPmRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  80 RYLHANGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSD 159
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 160 LVQWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLL 239
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 240 MMLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRP 319
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2252659085 320 ITQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIItLIPLSALIENKLLK 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 5-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 516.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00053    6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00053   86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00053  166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00053  246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLK 378
Cdd:MTH00053  326 FWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 513.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00022    4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00022   84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00022  164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00022  244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITLIPLSALIENKLLK 378
Cdd:MTH00022  324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 5-378 4.24e-176

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 494.83  E-value: 4.24e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00224    6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00224   86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00224  166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTL 324
Cdd:MTH00224  246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252659085 325 FWTLVADLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIItLIPLSALIENKLLK 378
Cdd:MTH00224  326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFI-ISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 5-374 2.32e-133

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 386.60  E-value: 2.32e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   5 RKTHPLAKIvnESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHA 84
Cdd:MTH00033    4 RKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  85 NGASMFFICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00033   82 NGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:MTH00033  162 WGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 245 FS--PDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQ 322
Cdd:MTH00033  242 EPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGK 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252659085 323 TLFWTLVADLMTLTWIGGQPV-EYPYVTVGQTASIMYFLIIITLIPLSALIEN 374
Cdd:MTH00033  322 FFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 2.36e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.44  E-value: 2.36e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   1 MTSPRKTHPLAKIVNE---------SFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITR 71
Cdd:COG1290     1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  72 DVNYGWMIRYLHANGASMFFICLFLHIGRGLYYGSFlflK-----TWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVI 146
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 147 TNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFTFH-FILPFIIAALATIHLLFLHETGSSNPSG----MTSEPDKISFH 221
Cdd:COG1290   158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 222 PYYTIKDILGLMFLLLLLMMLTLFSPDLltDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALMLSIL 299
Cdd:COG1290   238 PYYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2252659085 300 ILMIIPMMHTSKQQSMTFRPITQTLFWTLVADLMTLTWIGGQPVeyPYVTVGQTASIMYFLIIITLIPLSALIE 373
Cdd:COG1290   316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 12-365 3.07e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 349.62  E-value: 3.07e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  12 KIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  92 ICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVD 171
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 172 KATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDIlGLMFLLLLLMMLTLFSPDLLT 251
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA-YNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 252 DPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSkqqSMTFRPITQTLFWTLVAD 331
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2252659085 332 LMTLTWIGGQPVEYPYVTVGQTASIMYFLIIITL 365
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.54e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.03  E-value: 3.54e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085   9 PLAKIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  89 MFFICLFLHIGRGLYYGSF--LFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2252659085 167 GFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHETGSS 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 12-364 2.89e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 288.42  E-value: 2.89e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  12 KIVNESFIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  92 ICLFLHIGRGLYYGSFLFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVD 171
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 172 KATLTRFFTFHFILPFIIAALATIHLLFLHETGSSNP-SGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTLFSPDLL 250
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 251 TDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALMLSILILMIIPmmhtSKQQSMTFRPITQTLFWTLVA 330
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVS 317

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2252659085 331 DLMTLTWIGGQPVEYPYVTVGQTASIMYFLIIIT 364
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.07e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 259.62  E-value: 2.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  18 FIDLPAPSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  98 IGRGLYYGSF--LFLKTWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2252659085 176 TRFFTFHFILPFIIAALATIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 4.39e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 4.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 207 NPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTLFSPDLLTDPDNYTVANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2252659085 287 KLGGVLALMLSILILMIIPMMHTSKQQSmTFRPITQTLFWTLVADLMTLTWIGGQPVEYPYVTVGQTA 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-358 3.52e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 148.01  E-value: 3.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHTSKQQSMTFRPITQTLFWTLVADLMTLTWI 338
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 2252659085 339 GGQPVEYPYVTVGQTASIMY 358
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 1.05e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.31  E-value: 1.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  33 FGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFFICLFLHIGRGLYYGSFLFLK- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 112 -TWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFTFH-FILPFII 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2252659085 190 AALATIHLLFLHETGSSNP 208
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 3.56e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.37  E-value: 3.56e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  88 SMFFICLFLHIGRGLYYGSFLFLK--TWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 166 GGFSVDKATLTRFFTFHF-ILPFIIAALATIHLLFLHETGSSNPSGMTSEPDKISFHPYYTIKDILGLMFLLLLLMMLTL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2252659085 245 FSPDLLTDP 253
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 24-209 1.35e-37

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 134.85  E-value: 1.35e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085  24 PSNISSWWNFGSLLGTCLIIQITTGLFLAMHYTSDTTTAFSSVAHITRDVNYGWMIRYLHANGASMFFICLFLHIGRGLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 104 YGSFLFLK--TWNVGTILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFTF 181
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 2252659085 182 H-FILPFIIAALATIHLLFLHETGSSNPS 209
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 259-330 3.17e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.17  E-value: 3.17e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2252659085 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMM-HTSKQQSMTFRPITQT--LFWTLVA 330
Cdd:CHL00058   66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTvfLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-339 1.02e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.81  E-value: 1.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHT-SKQQSMTFRPITQTLFwtLVADLMTLtW 337
Cdd:COG5679    67 ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVF--LFGTLVTL-W 143


                  ..
gi 2252659085 338 IG 339
Cdd:COG5679   144 LG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-339 1.33e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.34  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659085 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMLSILILMIIPMMHT-SKQQSMTFRPITQTLFwtLVADLMTLtW 337
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF--LFGTVVAL-W 142


                  ..
gi 2252659085 338 IG 339
Cdd:TIGR01156 143 LG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH