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Conserved domains on  [gi|2386959126|ref|YP_010567784|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Percopsis omiscomaycus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 3.17e-64

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 190.13  E-value: 3.17e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 3.17e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 190.13  E-value: 3.17e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.13e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.25  E-value: 3.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126  20 IISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWADQL-VSPINTFAWATLVLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 2386959126  99 LTLGLVYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 1.28e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.78  E-value: 1.28e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   4 VLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWADQLV 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2386959126  84 S-PINTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:COG0838    86 ElGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 3.17e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 190.13  E-value: 3.17e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 2.97e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 167.48  E-value: 2.97e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   3 LVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWADQL 82
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2386959126  83 VSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-115 4.61e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 154.27  E-value: 4.61e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   3 LVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWADQL 82
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2386959126  83 VSPINTFAWATLVLLLLTLGLVYEWTQGGLEWA 115
Cdd:MTH00113   82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 1.37e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 140.46  E-value: 1.37e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIvTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00106    1 MNLMLTL-LTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 6.10e-39

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 126.25  E-value: 6.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 3.51e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 121.93  E-value: 3.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2386959126  81 QLVSPinTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:MTH00203   81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.33e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 96.85  E-value: 2.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWL-PLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLsKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2386959126  80 DQLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-114 1.67e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 94.84  E-value: 1.67e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWlpltnpDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWAD 80
Cdd:MTH00161    6 LLIILLISIILMILASLLSKKSIM------DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIF 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2386959126  81 QLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:MTH00161   80 KTSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.13e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.25  E-value: 3.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126  20 IISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWADQL-VSPINTFAWATLVLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 2386959126  99 LTLGLVYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.48e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 84.66  E-value: 1.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPL-TNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFrSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2386959126  80 DQLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWAE 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-114 5.52e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 80.49  E-value: 5.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   3 LVLTIVTITaaLSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWADQL 82
Cdd:MTH00018    4 FILLIFSVV--LSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2386959126  83 VSPINtFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:MTH00018   82 IAPFG-FWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-114 1.04e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 80.14  E-value: 1.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   4 VLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWADQLV 83
Cdd:MTH00055    8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2386959126  84 SPINTFAwATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:MTH00055   88 GLFGFWV-MYLFLIILTIGLIYEWVKGGLEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 1.28e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.78  E-value: 1.28e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   4 VLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWADQLV 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2386959126  84 S-PINTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:COG0838    86 ElGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-115 5.94e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.37  E-value: 5.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126  10 ITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWAdqlVSpINTF 89
Cdd:PRK06602   17 VAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWA---VS-FREI 90

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2386959126  90 AW-----ATLVLLLLTLGLVYEWTQGGLEWA 115
Cdd:PRK06602   91 GWlgfveAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 5-115 2.04e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 74.12  E-value: 2.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   5 LTIVTITAALSALLAIISFWLPL-----TNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWvlaarSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959126  80 DQLVSPINTFAWATLVLLLLTLGLVYEWTQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-114 1.05e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 67.65  E-value: 1.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   2 SLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWAdQ 81
Cdd:MTH00030   11 STLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWS-I 87

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959126  82 LVSPINTFAW--ATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:MTH00030   88 VFNQLNLFSFwiVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 4-114 2.75e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.83  E-value: 2.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   4 VLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLP--FSLRFFLVAILFLLFDLEIALLLPlpWADQ 81
Cdd:PRK07928    7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVS 84

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959126  82 LVSpINTFAWATLVLLLLTLGL--VYEWTQGGLEW 114
Cdd:PRK07928   85 FDA-LGVFGLVEMALFMLTVFVayAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-114 5.28e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.99  E-value: 5.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126  10 ITAALSALLAI-ISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWA---DQLvsP 85
Cdd:CHL00022   15 IISSLIPILAFlISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAmsfDVL--G 90

                          90       100
                  ....*....|....*....|....*....
gi 2386959126  86 INTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:CHL00022   91 VSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-74 1.12e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 49.12  E-value: 1.12e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2386959126   1 MSLVLTIVTITAALSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLL 74
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-114 1.09e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 41.58  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   3 LVLTIVTITAaLSALLAIISFWLPLTNPDYEKLSPYECGFDPLGSARlPFSLRFFLVAILFLLFDLEIALLlpLPWA-DQ 81
Cdd:PRK08489   17 LVLTFVAFFL-TTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAvDF 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2386959126  82 LVSPINTFAWATLVLLLLTLGLVYEWTQGGLEW 114
Cdd:PRK08489   93 KLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-114 4.24e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 39.73  E-value: 4.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959126   7 IVTITAALSALLAIISF----WLPLTNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWA--- 79
Cdd:PRK07756   11 IVLIFLLLGILLPVVALtlgrMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAvay 88

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2386959126  80 DQLvspiNTFAWATLVLLLLTLG--LVYEWTQGGLEW 114
Cdd:PRK07756   89 DKL----GLFALIEMLIFVVMLLvgLAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-77 6.28e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.11  E-value: 6.28e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2386959126  36 SPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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