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Conserved domains on  [gi|2554484946|ref|YP_010886804|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Paralagenidium karlingii]

Protein Classification

NADH-quinone oxidoreductase subunit J( domain architecture ID 10002877)

NADH-quinone oxidoreductase subunit J (NuoJ) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 4-185 2.10e-34

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 119.84  E-value: 2.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   4 EGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDINvlI 83
Cdd:COG0839     1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLD--K 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  84 NKSKSDNFGYLPIICLIGFVFFIETYLMFSKTFttyyhfldssgflqsngnaFYKIMINHVDTVSNIETLGQVLYTYYSF 163
Cdd:COG0839    79 EELREGFRKYRPLAALVGLLLLAELAYVLLSTS-------------------WAAAPAAAAAAVGNTKALGELLFTDYLL 139

                         170       180
                  ....*....|....*....|..
gi 2554484946 164 FFLVAGIILLIALIGAITLTKK 185
Cdd:COG0839   140 PFELASVLLLVAMIGAIVLARR 161
 
Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 4-185 2.10e-34

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 119.84  E-value: 2.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   4 EGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDINvlI 83
Cdd:COG0839     1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLD--K 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  84 NKSKSDNFGYLPIICLIGFVFFIETYLMFSKTFttyyhfldssgflqsngnaFYKIMINHVDTVSNIETLGQVLYTYYSF 163
Cdd:COG0839    79 EELREGFRKYRPLAALVGLLLLAELAYVLLSTS-------------------WAAAPAAAAAAVGNTKALGELLFTDYLL 139

                         170       180
                  ....*....|....*....|..
gi 2554484946 164 FFLVAGIILLIALIGAITLTKK 185
Cdd:COG0839   140 PFELASVLLLVAMIGAIVLARR 161
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
1-188 4.21e-34

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 120.33  E-value: 4.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   1 MNFEGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDIN 80
Cdd:PRK06638    1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  81 VLINKSKSDnfgYLPIICLIGFVFFIETYLMFskTFTTYYHFLDSSGFLQSNGnafykiminhvdtVSNIETLGQVLYTY 160
Cdd:PRK06638   81 FSEREQLRE---WLPGGVLIGLVILLGLLLLL--IVGAIIAASGVNAQGIAAG-------------EGNTKAIGILLFTD 142

                         170       180
                  ....*....|....*....|....*...
gi 2554484946 161 YSFFFLVAGIILLIALIGAITLTKKNKK 188
Cdd:PRK06638  143 YLLPFELASVLLLVAMVGAIVLARRERA 170
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
20-182 6.54e-24

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 92.18  E-value: 6.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  20 IFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDinvLINKSKSDNFGYLPIICL 99
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLL---AEEEPEKLRSGLPLAALL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946 100 IGFVFFIETYLMFSKTFTTyyhfldssgflqsngnafyKIMINHVDTVSNIETLGQVLYTYYSFFFLVAGIILLIALIGA 179
Cdd:pfam00499  78 LGLLLLALLLLVLLSASLT-------------------PAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGA 138


                  ...
gi 2554484946 180 ITL 182
Cdd:pfam00499 139 IVL 141
 
Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 4-185 2.10e-34

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 119.84  E-value: 2.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   4 EGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDINvlI 83
Cdd:COG0839     1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLD--K 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  84 NKSKSDNFGYLPIICLIGFVFFIETYLMFSKTFttyyhfldssgflqsngnaFYKIMINHVDTVSNIETLGQVLYTYYSF 163
Cdd:COG0839    79 EELREGFRKYRPLAALVGLLLLAELAYVLLSTS-------------------WAAAPAAAAAAVGNTKALGELLFTDYLL 139

                         170       180
                  ....*....|....*....|..
gi 2554484946 164 FFLVAGIILLIALIGAITLTKK 185
Cdd:COG0839   140 PFELASVLLLVAMIGAIVLARR 161
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
1-188 4.21e-34

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 120.33  E-value: 4.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   1 MNFEGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDIN 80
Cdd:PRK06638    1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  81 VLINKSKSDnfgYLPIICLIGFVFFIETYLMFskTFTTYYHFLDSSGFLQSNGnafykiminhvdtVSNIETLGQVLYTY 160
Cdd:PRK06638   81 FSEREQLRE---WLPGGVLIGLVILLGLLLLL--IVGAIIAASGVNAQGIAAG-------------EGNTKAIGILLFTD 142

                         170       180
                  ....*....|....*....|....*...
gi 2554484946 161 YSFFFLVAGIILLIALIGAITLTKKNKK 188
Cdd:PRK06638  143 YLLPFELASVLLLVAMVGAIVLARRERA 170
ND6 MTH00057
NADH dehydrogenase subunit 6; Provisional
 7-183 2.17e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177129 [Multi-domain]  Cd Length: 186  Bit Score: 105.08  E-value: 2.17e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   7 LLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDINVLINKS 86
Cdd:MTH00057    4 LFYLFALGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIAILFLFVIMMLNLTDLEGGG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  87 KSDNfgYLPIICLIGFVFFIEtylmfsktfttyyhFLDSSGFLQSNGNAFYKIMINHVDTVSNIETLGQVLYTYYSFFFL 166
Cdd:MTH00057   84 DMSN--YLPAGFIIGVVFLFE--------------VSSGISLLSSGTKIGQWDFPNWIEKESNIEVLGRVLYTDYYYLFI 147

                         170
                  ....*....|....*..
gi 2554484946 167 VAGIILLIALIGAITLT 183
Cdd:MTH00057  148 LASFILLVAMIGAIVLT 164
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 10-204 2.18e-24

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 94.79  E-value: 2.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  10 FFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDIN--VLINKSK 87
Cdd:MTH00021    1 FFSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIMLLNLTdfPPAFGGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  88 SDNFGYLPIICLIGFVFFIEtyLMFSKTFTTYYHFLDSSGFLQSNgnafykiMINHvdtvSNIETLGQVLYTYYSFFFLV 167
Cdd:MTH00021   81 ADMTNYIPIGLIIGTLFFSE--IASSWLIIGGPYVERWDLAFPWF-------LISY----HNIEALGRILYITCYYLFLL 147

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2554484946 168 AGIILLIALIGAITLTKKNKKKEMFLTK--NIYKQLSRE 204
Cdd:MTH00021  148 ASFILLVAMIGAIVLTQEPGSEVGPLSKkqDIFFQISRA 186
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
20-182 6.54e-24

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 92.18  E-value: 6.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  20 IFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLDinvLINKSKSDNFGYLPIICL 99
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLL---AEEEPEKLRSGLPLAALL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946 100 IGFVFFIETYLMFSKTFTTyyhfldssgflqsngnafyKIMINHVDTVSNIETLGQVLYTYYSFFFLVAGIILLIALIGA 179
Cdd:pfam00499  78 LGLLLLALLLLVLLSASLT-------------------PAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGA 138


                  ...
gi 2554484946 180 ITL 182
Cdd:pfam00499 139 IVL 141
ndhG CHL00016
NADH dehydrogenase subunit 6
 6-191 3.88e-16

NADH dehydrogenase subunit 6


Pssm-ID: 214335 [Multi-domain]  Cd Length: 182  Bit Score: 73.02  E-value: 3.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946   6 LLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMmldinvLINK 85
Cdd:CHL00016   10 FLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILLNADFVAAAQLLIYVGAINVLIIFAVM------FMNG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  86 SKSDNFGYLPIIClIGFVFFIETYLMFSKTFTTYY-HFLDSSGFLQSNGnafykimINHVDTVSNIETLGQVLYTYYSFF 164
Cdd:CHL00016   84 PEYSKDFNLWTVG-DGITSLVCTSLFFSLITTILDtSWYGIIWTTRSNQ-------IIEQDLISNVQQIGIHLSTDFLLP 155

                         170       180
                  ....*....|....*....|....*..
gi 2554484946 165 FLVAGIILLIALIGAITLTKKNKKKEM 191
Cdd:CHL00016  156 FELISIILLVALIGAITVARQEQVEET 182
ND6 MTH00213
NADH dehydrogenase subunit 6; Provisional
 17-182 2.57e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177256 [Multi-domain]  Cd Length: 239  Bit Score: 63.76  E-value: 2.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  17 TAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMMLD------------------ 78
Cdd:MTH00213   12 SSAVTPTYSHNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPggakgfkptkgnkkeker 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554484946  79 --------------INVLI-------------------NKSKSDNFGYLPIICLIGFVFFIETYLMFSKTFTTY------ 119
Cdd:MTH00213   92 kkgeetgrigappaIGILIgailaaelasavpdsflnnPSGRGGAERYELTNILSDRNRGVSSLLGSDKESITTgiqnni 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2554484946 120 YHFLDSSGFLQSNGNAFYKIminHVDTVSNIETLGQVLYTYYSFFFLVAGIILLIALIGAITL 182
Cdd:MTH00213  172 YMRVGATGAPYLYNDSFFTL---NGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 231
PRK06433 PRK06433
NADH dehydrogenase subunit J; Provisional
 1-76 3.40e-05

NADH dehydrogenase subunit J; Provisional


Pssm-ID: 180562 [Multi-domain]  Cd Length: 88  Bit Score: 41.13  E-value: 3.40e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554484946   1 MNFEGLLLFFFSSITLTAAIFVIYSTNTIYSAFFLILVFTSTTALLLISEVEFLSLMLIIIYVGAITVLFIFVIMM 76
Cdd:PRK06433    1 MMYETIAFALFALVTVAFSLGVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITFAVML 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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