|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
0e+00 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 519.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPLMLISLSLLS 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 161 ILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 241 ILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320
|
330 340
....*....|....*....|....*..
gi 2554491075 321 LSLPLSITASLTICLLPLTPTILTMTT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
2.14e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 83.90 E-value: 2.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 23 SSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEIQQMVHPLPTTI---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 98 -------ITLALALKIGLAPLHAWLPEVLQGLDLTAGLIL-STWQKIAPFAL-----LMQINAPTPLMLISLSLLSILV- 163
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLl 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 164 GGWGGLNQNQLRKILAYSSIAHLGWMVLVL----QFSPSLTLLTLSLYIIMTSSLFL-----SFKTNKTTTINSLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 2554491075 235 KTPTLTILIPPILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-299 |
1.93e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.86 E-value: 1.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLF--------AS 74
Cdd:COG1007 105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 75 TTN-----AWLSGQWEIQQMVhPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT 149
Cdd:COG1007 182 SLNlagiaAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 150 PLMLISLSLLSILV--------GGWGGLNQNQLRKILAYSSIAHLGWMVLVL----QFSPSLTLLTLSLYIIMTSSLF-- 215
Cdd:COG1007 261 FPGLAADWQLLLAVlavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFav 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 216 ---LSFKTNKTTTINSLATSWAKTPTLTIL----------IPpillslgglpPLTGFMPKWLILQELTKQDLALAATVAA 282
Cdd:COG1007 341 illLSRKGGEAEEIEDLAGLARRSPLLALAmtifllslagIP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
|
330
....*....|....*..
gi 2554491075 283 LSALLSLYFYLRLCYAM 299
Cdd:COG1007 411 LNSVISAYYYLRVVKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-337 |
1.69e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.13 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSG 82
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 83 QWEIQQMVHPLPTTIIT------------LALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 146 ---NAPTPLMLISLSLLSILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYI----IMTSSLFLSF 218
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIfiyaLMSLGAFGVL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 219 ------KTNKTTTINSLATSWAKTPTLTILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFY 292
Cdd:TIGR01770 342 sllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2554491075 293 LRLCYAMTLTmSPNTIINTMPWRlPSTQLSLPLSITASLTICLLP 337
Cdd:TIGR01770 422 LRVVKVMYFD-KPERRIPSNPQS-KAQSLLLSISALFILFLGLFP 464
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
0e+00 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 519.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPLMLISLSLLS 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 161 ILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 241 ILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320
|
330 340
....*....|....*....|....*..
gi 2554491075 321 LSLPLSITASLTICLLPLTPTILTMTT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.23e-127 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 369.25 E-value: 1.23e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT-PLMLISLSLL 159
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLnSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 160 SILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 240 TILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLpST 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319
|
330 340
....*....|....*....|....*.
gi 2554491075 320 QLSLPLSITASLTICLLPLTPTILTM 345
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.01e-116 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 341.42 E-value: 1.01e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI-NAPTPLMLISLSLL 159
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 160 SILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 240 TILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPST 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*..
gi 2554491075 320 QlSLPLSITASLTICLLPLTPTILTMT 346
Cdd:MTH00112 321 K-NTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.37e-114 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 335.28 E-value: 3.37e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT-PLMLISLSLL 159
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSInPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 160 SILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 240 TILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPST 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 2554491075 320 QLSLPLSITASLTICLLPLTPTILTMT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
4.67e-104 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 309.21 E-value: 4.67e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQIN-APTPLMLISLSLL 159
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLApALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 160 SILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 240 TILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPST 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*...
gi 2554491075 320 qLSLPLSITASLTICLLPLTPTILTMTT 347
Cdd:MTH00200 321 -SNLLVGLLLLLSILGLPLTPQLLFLFF 347
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-344 |
1.72e-82 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 254.47 E-value: 1.72e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGQWEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI-NAPTPLMLISLSLL 159
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 160 SILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 240 TILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPST 319
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*
gi 2554491075 320 QLSLPLSITASLTICLLPLTPTILT 344
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPLF 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
5.56e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 175.01 E-value: 5.56e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 1 MNPYILMTLAFgLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWL 80
Cdd:MTH00160 3 MNSSKLLFLST-LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 81 SGqweiqqMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINapTPLMLISLSLLS 160
Cdd:MTH00160 82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 161 ILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTLT 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 241 ILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMpwrLPSTQ 320
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK---KKKNK 310
|
330 340
....*....|....*....|....*
gi 2554491075 321 LSLPLSITASLTICLLPLTPTILTM 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-318 |
1.29e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 158.51 E-value: 1.29e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEIqqmvhp 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 93 lpTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQIN--APTPLMLISLSLLSILVGGWGGLN 170
Cdd:MTH00144 87 --MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlYWLAYLLCVISVLSALVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 171 QNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTLTILI------- 243
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIslllslg 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2554491075 244 --PPIllslgglpplTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTLTMSPNTIINTMPWRLPS 318
Cdd:MTH00144 245 glPPF----------LGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
15-337 |
4.28e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 151.86 E-value: 4.28e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTnawlsgQWEIQQMVHPLP 94
Cdd:MTH00011 17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNIT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 95 TTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPLMLISLSLLS-ILVGGWGGLNQNQ 173
Cdd:MTH00011 91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMsALAGGLGGMNQTQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 174 LRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFK--TNKTTTINSLATSWAKTPTLTILIppILLSLG 251
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAylNAFSTKFNSKISSMSQTTSMSLFI--MLLSLG 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 252 GLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCYAMTlTMSPNTIINTMPWRLPSTQLSLPLsitASL 331
Cdd:MTH00011 249 GLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISM---CTL 324
|
....*.
gi 2554491075 332 TICLLP 337
Cdd:MTH00011 325 SLGLIP 330
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-297 |
3.30e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 133.26 E-value: 3.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 7 MTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLF---ASTTNAWLSgq 83
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYLS-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 84 weiqqmvhPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINApTPLMLISLSLLSILV 163
Cdd:MTH00197 79 --------LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS-SFMGLLICSVLSSLI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 164 GGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTINSLATSWAKTPTLTILI 243
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2554491075 244 PPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFYLRLCY 297
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-266 |
3.15e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.47 E-value: 3.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHP-RATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEIQ------ 87
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 88 -------QMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINaPTPLMLISLSLLS 160
Cdd:MTH00196 84 nsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIG-LNVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 161 ILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQF----SPSLTLLTLSLYIIMTSSLF---LSFKTNKTTTINSLATSw 233
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSGLS- 241
|
250 260 270
....*....|....*....|....*....|...
gi 2554491075 234 AKTPTLTILIPPILLSLGGLPPLTGFMPKWLIL 266
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-266 |
4.44e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 90.85 E-value: 4.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEIQQMVH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 92 PLPTTI----ITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQInAPTPLMLISLSLLSILVGGWG 167
Cdd:MTH00199 186 ILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI-GPVTNVVLICAVLSIIYGAIG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 168 GLNQNQLRKILAYSSIAHLG---WMVLVLQF-SPSLTLLTLSLYIIMTS---SLFLSFKTNKTTTINSLATS-----WAK 235
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLSrknpvIAL 344
|
250 260 270
....*....|....*....|....*....|....*
gi 2554491075 236 TPTLTIL----IPPIllslgglpplTGFMPKWLIL 266
Cdd:MTH00199 345 TLALTFLsiagIPPL----------AGFLSKWLIL 369
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
2.14e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 83.90 E-value: 2.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 23 SSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEIQQMVHPLPTTI---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 98 -------ITLALALKIGLAPLHAWLPEVLQGLDLTAGLIL-STWQKIAPFAL-----LMQINAPTPLMLISLSLLSILV- 163
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLl 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 164 GGWGGLNQNQLRKILAYSSIAHLGWMVLVL----QFSPSLTLLTLSLYIIMTSSLFL-----SFKTNKTTTINSLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 2554491075 235 KTPTLTILIPPILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-299 |
1.93e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.86 E-value: 1.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLF--------AS 74
Cdd:COG1007 105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 75 TTN-----AWLSGQWEIQQMVhPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT 149
Cdd:COG1007 182 SLNlagiaAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 150 PLMLISLSLLSILV--------GGWGGLNQNQLRKILAYSSIAHLGWMVLVL----QFSPSLTLLTLSLYIIMTSSLF-- 215
Cdd:COG1007 261 FPGLAADWQLLLAVlavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFav 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 216 ---LSFKTNKTTTINSLATSWAKTPTLTIL----------IPpillslgglpPLTGFMPKWLILQELTKQDLALAATVAA 282
Cdd:COG1007 341 illLSRKGGEAEEIEDLAGLARRSPLLALAmtifllslagIP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
|
330
....*....|....*..
gi 2554491075 283 LSALLSLYFYLRLCYAM 299
Cdd:COG1007 411 LNSVISAYYYLRVVKAM 427
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
4-299 |
9.72e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 74.86 E-value: 9.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQH-HHPRATEATTKYFLTQATAAAMLLFASTTNAWLSG 82
Cdd:PRK05777 106 YLLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 83 QWEIQQMVHPLPTTI------------ITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI--NAP 148
Cdd:PRK05777 183 SLSFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvVAF 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 149 TPLMLISLSLLSI------LVGGWGGLNQNQLRKILAYSSIAHLGWMVLVL----QFSPSLTLLTLSLYIIMTSSLF--- 215
Cdd:PRK05777 263 GGLSEDWQQVLAIiaiasmLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFgvi 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 216 --LSFKTNKTTTINSLA----TSWAKTPTLTIL------IPPIllslgglpplTGFMPKWLILQELTKQDLALAATVAAL 283
Cdd:PRK05777 343 slLRRKGGEAESISDFAglskRSPLLAAVMTIFmlslagIPPT----------AGFWGKFYVFEAAVEAGLWWLAVIGVL 412
|
330
....*....|....*.
gi 2554491075 284 SALLSLYFYLRLCYAM 299
Cdd:PRK05777 413 NSAIGAFYYLRVIKLM 428
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-337 |
1.69e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.13 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSG 82
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 83 QWEIQQMVHPLPTTIIT------------LALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 146 ---NAPTPLMLISLSLLSILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYI----IMTSSLFLSF 218
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIfiyaLMSLGAFGVL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 219 ------KTNKTTTINSLATSWAKTPTLTILIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATVAALSALLSLYFY 292
Cdd:TIGR01770 342 sllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2554491075 293 LRLCYAMTLTmSPNTIINTMPWRlPSTQLSLPLSITASLTICLLP 337
Cdd:TIGR01770 422 LRVVKVMYFD-KPERRIPSNPQS-KAQSLLLSISALFILFLGLFP 464
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
290-340 |
5.09e-12 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 59.96 E-value: 5.09e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2554491075 290 YFYLRLCYAMTLTMSPNTIINTMPWRLPSTQLSLPLSITASLTICLLPLTP 340
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
13-191 |
1.05e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 62.95 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRAT---------EATTKYFLTQATAAAMLLFASTTNAWLSGQ 83
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGN 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 84 --------------WEIQQMVHPLPTTIITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQInAPT 149
Cdd:MTH00198 277 egmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL-VIT 355
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2554491075 150 PLMLISLSLLSILVGGWGGLNQNQLRKILAYSSIAHLGWMVL 191
Cdd:MTH00198 356 SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-267 |
6.36e-10 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 60.16 E-value: 6.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQW---EIQQMVH 91
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLnmaDLAARLA 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 92 PLPTTIITLALAL-------KIGLAPLHAWLPE-----------VLQGLDLTAGL--ILSTWQKIAPFALLMQINaptpL 151
Cdd:COG0651 198 ELDPGLLLAAFALllvgfgiKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG----T 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 152 MLISLSLLSILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYII----MTSSLFLS----FKTNKT 223
Cdd:COG0651 274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERATGT 353
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2554491075 224 TTINSLATSWAKTPTLTIL----------IPPILlslgglppltGFMPKWLILQ 267
Cdd:COG0651 354 RDLDKLGGLGKRMPLTAAAfligalalagLPPLS----------GFVSKWLLLQ 397
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
18-193 |
5.80e-06 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 48.00 E-value: 5.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 18 LITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFL------TQATAAAMLLFASTTNAWLSGQ----W-EI 86
Cdd:PRK06458 122 LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEmailWtEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 87 QQMVHPLPTTIITLALAL-------KIGLAPLHAWLPE-----------VLQGLDLTAGL-ILSTWQKIAPFALLmqiNA 147
Cdd:PRK06458 202 LKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIG---SD 278
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2554491075 148 PTPLMLISLSLLSILVGGWGGLNQNQLRKILAYSSIAHLGWMVLVL 193
Cdd:PRK06458 279 FPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFAL 324
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-217 |
4.53e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 44.87 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 33 LEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFA--------STTN-AWLSGQWEIQQMVHpLPTTIITLALA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtGTLNmADLAGALAENPTVV-TAFGFVLLALA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 104 LKIGLAPLHAWLPEVLQGLDLTAGLILS-TWQKIAPFALL--------MQINAPTPLMLISLSLLSIL--VGGWGGLNQN 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvfgGDFRFALGLGWLLAVLALLSmlVGSLAALGQD 293
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2554491075 173 QLRKILAYSSIAHLGWMVLVLQFSPSLTLLTLSLYI----IMTSSLFLS 217
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLA 342
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-191 |
1.29e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 40.47 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 33 LEMNTLAIIPLLAQHHH-PRATEATTKYFLTQATAAAMLLFASttnAWLSGQWEIQQMVH--------PLPTTIITLA-- 101
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmsenPTVVAKIALAlf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 102 ---LALKIGLAPLHAWLPEVLQGL--DLTAGLILSTWQKI-APFALLMQINAPT------PLMLISLSLLSILVGGWGGL 169
Cdd:PRK08376 227 iagLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIYGPAinlatvGWVIIILGCLTMFVGVAMAV 306
|
170 180
....*....|....*....|..
gi 2554491075 170 NQNQLRKILAYSSIAHLGWMVL 191
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLL 328
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-191 |
2.65e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 39.29 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 49 HPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQW--EIQQMV-HPLPTTI-------ITLALALKIGLAPLHAWLPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 119 LQ-----GLDLTAGLILstwqKIAPFALLmQINAP-TPLMLISLSLLSILV-------GGWGGLNQNQLRKILAYSSIAH 185
Cdd:COG1008 236 HVeaptaGSVLLAGVLL----KMGGYGLL-RFALPlFPEASAYFAPLLAALgvigiiyGALVALAQTDLKRLIAYSSVSH 310
|
....*.
gi 2554491075 186 LGWMVL 191
Cdd:COG1008 311 MGFVLL 316
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
38-191 |
4.20e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 38.91 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 38 LAIIPL---LAQHHHPRATEATTKYFLTQATAAAMLLFASTTNAWLSGQWEI---QQMVHPLPTTI-------ITLALAL 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLSTqllllapILVGFGI 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 105 KIGLAPLHAWLPE-----------VLQGLDLTAG----------LILSTWQKIAPF-ALLMQINAptplmlislsllsiL 162
Cdd:PRK06473 218 KIPLVPFHTWLPDahveastpvsvLLAGVLLKLGtygllrfgvgLFPEAWVYLAPWlATWAVVSV--------------L 283
|
170 180
....*....|....*....|....*....
gi 2554491075 163 VGGWGGLNQNQLRKILAYSSIAHLGWMVL 191
Cdd:PRK06473 284 YGASCAIAQKDMKKMVAYSSIGHMGYILL 312
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
100-191 |
5.80e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 38.38 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491075 100 LALALKIGLAPLHAWLPEV-LQGLDLTAGLILSTWQKIAPFALL----------MQINAPtplMLISLSLLSILVGGWGG 168
Cdd:TIGR01972 211 IAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLrfnlplfpdaSLYFAP---VLAALGVIAIIYGALIA 287
|
90 100
....*....|....*....|...
gi 2554491075 169 LNQNQLRKILAYSSIAHLGWMVL 191
Cdd:TIGR01972 288 LAQTDIKRLIAYSSISHMGFVLL 310
|
|
| |
