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Conserved domains on  [gi|2554491079|ref|YP_010892806|]
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ATP synthase F0 subunit 6 (mitochondrion) [Melanotaenia fluviatilis]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 6.86e-127

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 357.65  E-value: 6.86e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 6.86e-127

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 357.65  E-value: 6.86e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 9.15e-52

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 167.00  E-value: 9.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   5 LFDQFLSPVF----LGIPLIVLALSLPWILYPQPTSRWL-NNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLF 79
Cdd:TIGR01131   1 LFSQFDISPItlfsLTLLSLILLLSLLIFLISSSLSRWLiPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  80 LVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGV 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2554491079 160 RLTANLTAGHLLIQLTSTAVFTLMflMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 4.04e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 129.83  E-value: 4.04e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  66 GHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIII 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2554491079 146 ETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFltsILLLLLTLLEVAVALIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPL---LLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 1.22e-31

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 114.89  E-value: 1.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  63 NPKGHKWAALFTALMLFLVTLNTLGLL---PYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHA-LGHLLPEGTPAPL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 139 IPLLIIIETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 2554491079 219 LSLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 57-225 5.97e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 94.75  E-value: 5.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  57 QIFQPINPKGHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQ-PTHALGHLLPEGTP 135
Cdd:COG0356    45 QVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 136 aPLIPLLIIIETASLLIRPLALGVRLTANLTAGHLLIqltstAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVF 215
Cdd:COG0356   125 -WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIF 198

                         170
                  ....*....|
gi 2554491079 216 VLLLSLYLQE 225
Cdd:COG0356   199 TMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 6.86e-127

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 357.65  E-value: 6.86e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-226 5.28e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 307.28  E-value: 5.28e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00073    1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00073   81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00073  161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 1.71e-101

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 293.27  E-value: 1.71e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00120    1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00120   81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00120  161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 1.76e-90

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 265.66  E-value: 1.76e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00179    1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00179   81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:MTH00179  161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 5.78e-72

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 218.67  E-value: 5.78e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWILYPQPTsRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFL 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPN-RLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  81 VTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVR 160
Cdd:MTH00101   80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2554491079 161 LTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101  160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 9.15e-52

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 167.00  E-value: 9.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   5 LFDQFLSPVF----LGIPLIVLALSLPWILYPQPTSRWL-NNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLF 79
Cdd:TIGR01131   1 LFSQFDISPItlfsLTLLSLILLLSLLIFLISSSLSRWLiPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  80 LVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGV 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2554491079 160 RLTANLTAGHLLIQLTSTAVFTLMflMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 5-227 1.51e-51

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 166.69  E-value: 1.51e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   5 LFDQFLSPVFLGIPLIVLALS--LPWILYPQPTSrWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFLVT 82
Cdd:MTH00035    7 IFGQFSPDTILFIPLTLLSSViaLSWLFFINPTN-WLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  83 LNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVRLT 162
Cdd:MTH00035   86 INVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLA 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2554491079 163 ANLTAGHLLIQLTSTAVFTLMFLmPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:MTH00035  166 ANLTAGHLLIFLLSTAIWELSNS-PLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-227 1.15e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 144.02  E-value: 1.15e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGIPLIVLALSLPWI-LYPQPTSRWL-NNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALML 78
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISLSWITLLLfLLLMPSSVWFcPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  79 FLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALG 158
Cdd:MTH00176   81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2554491079 159 VRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:MTH00176  161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 72-225 3.35e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 142.23  E-value: 3.35e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  72 LFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLL 151
Cdd:MTH00157   71 IFISLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNL 150

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2554491079 152 IRPLALGVRLTANLTAGHLLIQLTSTavfTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQE 225
Cdd:MTH00157  151 IRPGTLAVRLAANMIAGHLLLTLLGN---TGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 4.04e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 129.83  E-value: 4.04e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  66 GHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIII 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2554491079 146 ETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFltsILLLLLTLLEVAVALIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPL---LLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 72-225 3.01e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 127.29  E-value: 3.01e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  72 LFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLL 151
Cdd:MTH00173   74 LLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSIL 153

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2554491079 152 IRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTL-AFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQE 225
Cdd:MTH00173  154 IRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFSSSVVsLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 18-222 1.20e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 115.60  E-value: 1.20e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  18 PLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFLVTLNTLGLLPYTFTPTT 97
Cdd:MTH00005   22 STAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSS 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  98 QLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVRLTANLTAGHLLIQLTST 177
Cdd:MTH00005  102 HLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGI 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2554491079 178 AVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLY 222
Cdd:MTH00005  182 YAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 1.22e-31

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 114.89  E-value: 1.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  63 NPKGHKWAALFTALMLFLVTLNTLGLL---PYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHA-LGHLLPEGTPAPL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 139 IPLLIIIETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 2554491079 219 LSLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 2.74e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 112.06  E-value: 2.74e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079   1 MTLGLFDQFLSPVFLGI--PLIVLALSLPWILYPQPTSRWLNNRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALML 78
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  79 FLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALG 158
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2554491079 159 VRLTANLTAGHLLIQLTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 65-223 9.44e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 102.78  E-value: 9.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  65 KGHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLII 144
Cdd:MTH00175   78 SGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVL 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 145 IETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFL-MPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYL 223
Cdd:MTH00175  158 IETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 57-225 5.97e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 94.75  E-value: 5.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  57 QIFQPINPKGHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQ-PTHALGHLLPEGTP 135
Cdd:COG0356    45 QVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 136 aPLIPLLIIIETASLLIRPLALGVRLTANLTAGHLLIqltstAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVF 215
Cdd:COG0356   125 -WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIF 198

                         170
                  ....*....|
gi 2554491079 216 VLLLSLYLQE 225
Cdd:COG0356   199 TMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 62-225 2.85e-20

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 85.23  E-value: 2.85e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  62 INPKGHKWAALFTALMLFLVTLNTLGLLP-YTFTPTTQLSLNMAFAVPLWLATVLIGMRYqptHALGHLLPEGTPAPlIP 140
Cdd:PRK05815   65 IGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKK---KGLGGYLKEFYLQP-HP 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 141 LLIIIETASLLIRPLALGVRLTANLTAGHLLIQLtstaVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLS 220
Cdd:PRK05815  141 LLLPIEIISEFSRPISLSLRLFGNMLAGELILAL----IALLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTI 216


                  ....*
gi 2554491079 221 LYLQE 225
Cdd:PRK05815  217 VYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 41-227 3.06e-17

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 77.67  E-value: 3.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  41 NRLLALQGCFINRFTQQIFQPINPKGHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRY 120
Cdd:MTH00174   62 NRILVGLELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLIT 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079 121 QPTHALGHLLPEGTPAPLIPLLIIIETASLLIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMPTL-AFLTSILLLL 199
Cdd:MTH00174  142 FRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIF 221

                         170       180
                  ....*....|....*....|....*...
gi 2554491079 200 LTLLEVAVALIQAYVFVLLLSLYLQENL 227
Cdd:MTH00174  222 VTILEMAVAIIQAYVFTLLTIVYLRDTV 249
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 72-225 2.55e-12

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 63.46  E-value: 2.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  72 LFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMryQPTHALGHLLPEGTPAPLIPL-LIIIETASL 150
Cdd:MTH00087   54 ISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFL--SKSEKFSVYLSKGSDSFLKTFsMLFVEIVSE 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2554491079 151 LIRPLALGVRLTANLTAGHLLIQLTSTAVFTLMFLMptlafltsillLLLTLLEVAVALIQAYVFVLLLSLYLQE 225
Cdd:MTH00087  132 LSRPLALTLRLTVNLMVGHLISSLLNFLGEKYVWLS-----------ILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-223 6.96e-12

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 63.61  E-value: 6.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  72 LFTALMLFLVtLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIETASLL 151
Cdd:PRK13419  174 LLTVFFFILV-CNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLF 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2554491079 152 IRPLALGVRLTANLTAGHLLIqltsTAVFTLMFLMPT---LAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYL 223
Cdd:PRK13419  253 TKPFALTVRLFANMTAGHIVI----LSLIFISFILKSyivAVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 6.87e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 57.98  E-value: 6.87e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  94 TPTTQLSLNMAFAVPLWLATVLIGMRYQPTHALGHLLPEGTPAPLIPLLIIIE-TASLLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2554491079 173 qlTSTAVFTLMFLMPTLAFLTSILLLLLTLLEVAVALIQAYVFVLLLSLYL 223
Cdd:PRK13417  297 --LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 56-172 5.33e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 36.98  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554491079  56 QQIFQPINPKGHKWAALFTALMLFLVTLNTLGLLPYTFTPTTQLSLNMAFAVPLWLATVLIGMRYQptHALGHLLPEGTP 135
Cdd:PRK13421   64 AQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVRAR--GVRGYLATFAEP 141

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2554491079 136 APLIPLLIIIETaslLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13421  142 TWVMIPLNLVEQ---LTRTFSLIVRLFGNVMSGVFVI 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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