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Conserved domains on  [gi|62161321|ref|YP_214938|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Homalodisca vitripennis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-304 3.83e-125

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 359.85  E-value: 3.83e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62161321  241 IFFGGDFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:MTH00193 243 MFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-304 3.83e-125

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 359.85  E-value: 3.83e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62161321  241 IFFGGDFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:MTH00193 243 MFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
7-296 3.96e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.90  E-value: 3.96e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321     7 LILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSLFIW 86
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    87 CLFPF--YWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNFIN 164
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   165 FFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIFFG 244
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 62161321   245 G------DFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIF 296
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-304 2.01e-88

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 267.38  E-value: 2.01e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:COG1005  10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  81 QSLFIWCLFPF--YWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN 158
Cdd:COG1005  90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321 159 GYNFINFFVFQIS-SWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSL 237
Cdd:COG1005 170 SLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62161321 238 TVIIFFGG-------DFYSFI-----FFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:COG1005 250 ATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLLF 328
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-304 3.83e-125

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 359.85  E-value: 3.83e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62161321  241 IFFGGDFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:MTH00193 243 MFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 3-300 2.33e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 340.31  E-value: 2.33e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    3 FITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQS 82
Cdd:MTH00143   4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   83 LFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNF 162
Cdd:MTH00143  84 LLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSF 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  163 INFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIF 242
Cdd:MTH00143 164 IEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLF 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62161321  243 FGGDF-----YSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFI 300
Cdd:MTH00143 244 FGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-301 4.97e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 334.31  E-value: 4.97e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62161321  241 IFFGGDFY--SFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIK 301
Cdd:MTH00225 242 LFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIIL 304
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-298 1.76e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 305.39  E-value: 1.76e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62161321  241 IFFGGDFY-------SFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFV 298
Cdd:MTH00071 246 LFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHI 310
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-298 2.75e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 299.52  E-value: 2.75e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    3 FITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQS 82
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   83 LFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNF 162
Cdd:MTH00218  85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  163 INFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIF 242
Cdd:MTH00218 165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 62161321  243 FGGDFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFV 298
Cdd:MTH00218 245 LGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHT 300
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 4-293 3.28e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 299.50  E-value: 3.28e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    4 ITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSL 83
Cdd:MTH00111   9 INPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLAL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   84 FIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNFI 163
Cdd:MTH00111  89 TIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQ 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  164 NFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIFF 243
Cdd:MTH00111 169 TLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFL 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 62161321  244 G-------GDFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSF 293
Cdd:MTH00111 249 NpstlnlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLAL 305
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-295 9.38e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 296.13  E-value: 9.38e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00134   7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00134  87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00134 167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62161321  241 IFFGGDFY-------SFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFII 295
Cdd:MTH00134 247 LFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVI 308
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-298 2.34e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 294.99  E-value: 2.34e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62161321  241 IFFGG-------DFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFV 298
Cdd:MTH00104 241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHI 305
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-305 5.48e-99

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 294.19  E-value: 5.48e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGY 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  161 NFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVI 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62161321  241 IFFGGDFYSFIFF--------YQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLVF 305
Cdd:MTH00040 245 LFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLN 317
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 4-300 5.93e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 293.57  E-value: 5.93e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    4 ITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSL 83
Cdd:MTH00195   6 IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   84 FIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNFI 163
Cdd:MTH00195  86 ILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  164 NFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIFF 243
Cdd:MTH00195 166 IMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFL 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 62161321  244 GGDfYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFI 300
Cdd:MTH00195 246 GGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAI 301
NADHdh pfam00146
NADH dehydrogenase;
7-296 3.96e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.90  E-value: 3.96e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321     7 LILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSLFIW 86
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    87 CLFPF--YWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNFIN 164
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   165 FFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIFFG 244
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 62161321   245 G------DFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIF 296
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-304 3.99e-93

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 278.59  E-value: 3.99e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    2 FFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQ 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   82 SLFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYN 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  162 FINFFVFQiSSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVII 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62161321  242 FFGGDFYSFI----FFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:MTH00010 244 FTSFIPSIFIsdlmLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-304 2.01e-88

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 267.38  E-value: 2.01e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:COG1005  10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  81 QSLFIWCLFPF--YWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN 158
Cdd:COG1005  90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321 159 GYNFINFFVFQIS-SWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSL 237
Cdd:COG1005 170 SLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62161321 238 TVIIFFGG-------DFYSFI-----FFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKVLV 304
Cdd:COG1005 250 ATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLLF 328
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-296 4.59e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 258.90  E-value: 4.59e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    2 FFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQ 81
Cdd:MTH00216   8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   82 SLFIWCLFPFYWNCISFVF--GMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMING 159
Cdd:MTH00216  88 ALIVWGVIPYERGVLISDFkiGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  160 YNFINFFVFQISS-WFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLT 238
Cdd:MTH00216 168 LSITEIVLAQNNGiWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62161321  239 VIIFFGG--------DFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIF 296
Cdd:MTH00216 248 TILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIF 313
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-300 3.09e-80

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 246.26  E-value: 3.09e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:PRK06076  11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPF--YWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN 158
Cdd:PRK06076  91 PAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  159 GYNFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLT 238
Cdd:PRK06076 171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62161321  239 VIIFFGGdFYSFI-----------FFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFI 300
Cdd:PRK06076 251 TTLFLGG-WLPPFplgggipgaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTAAV 322
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-296 1.93e-79

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 244.25  E-value: 1.93e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLI 80
Cdd:MTH00054   3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   81 QSLFIWCLFPFYWNCI--SFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN 158
Cdd:MTH00054  83 LAFIAWGVIPYGEGVVlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  159 GYNFINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLT 238
Cdd:MTH00054 163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62161321  239 VIIFFGGDFYSFI----------FFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIF 296
Cdd:MTH00054 243 VILFLGGWLVISGptsyfsnfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-296 2.72e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 213.73  E-value: 2.72e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    4 ITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSL 83
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   84 FIWCLFPFYWNCI--SFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYN 161
Cdd:MTH00029  91 LAWAIVTMDQGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  162 FINFFVFQISSWFFFCSVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVII 241
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62161321  242 FFGG-----------------------DFYSFIFFYQVNFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIF 296
Cdd:MTH00029 251 FLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVIL 328
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 7-302 9.36e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 202.82  E-value: 9.36e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    7 LILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQSLFIW 86
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   87 CLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNFINFF 166
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  167 vfqisSWFFFCsvpMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIFFGgd 246
Cdd:MTH00090 163 -----SLSLFV---IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 62161321  247 fYSFIFFYqvnFFCFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFVFIKV 302
Cdd:MTH00090 233 -FSFLMLF---LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 3-298 5.01e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 167.79  E-value: 5.01e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    3 FITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQS 82
Cdd:MTH00058   4 LVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   83 LFIWCLFPFYWNCISFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMINGYNF 162
Cdd:MTH00058  84 VFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  163 INFFVFQISSWFFFcsVPMFLCWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFISSLTVIIF 242
Cdd:MTH00058 164 VDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 62161321  243 FGGDFYSFIFFYQVnffcFLFIWVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFV 298
Cdd:MTH00058 242 FGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-291 1.06e-35

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 132.00  E-value: 1.06e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321    3 FITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPNKVGFMGLLQPFSDGIKLFLKEQVWPIDSNSLIYYLCPLFSLIQS 82
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   83 LFIWCLFPFYWNCI--SFVFGMLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN-- 158
Cdd:CHL00032 110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNsl 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  159 ---------------GYNF----INFFVFQISSwfffcsvpmflcwfsccLAESNRTPFDFSEGESELVSGFNIEYGSGG 219
Cdd:CHL00032 190 stvdiveaqskygfwGWNLwrqpIGFIVFLISS-----------------LAECERLPFDLPEAEEELVAGYQTEYSGIK 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  220 FALLFISEYASIIFISSLTVIIFFGG-----DFYSFIFFYQVN--------------------FFCFLFIWVRCSFPRFR 274
Cdd:CHL00032 253 FGLFYVASYLNLLVSSLFVTVLYLGGwnlsiPYIFIPELFEINktggvfgttigifitlaktyLFLFISITTRWTLPRLR 332

                        330
                 ....*....|....*..
gi 62161321  275 YDKLMYLAWKCYLPISL 291
Cdd:CHL00032 333 MDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-298 4.33e-24

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 99.49  E-value: 4.33e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321   1 MFFITSLILIILVMVSVGFFTLLERKVLSYMQIRKGPnkvgfmGLLQPFSDGIKLFLKEQVWPIDSnSLIYYLCPLFSLI 80
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETA-SWLFRAAPYVALA 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321  81 QSLFIWCLFPFYWNCISFVFG--MLFFLCCSSLSIYGLIICGWSSNSSYSMLGCIRSISQAISYEVSLSLIMLCFFLMIN 158
Cdd:COG0650  75 AMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAG 154

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161321 159 GYNFINFFVFQISSWFFFCSVPMFL---CWFSCCLAESNRTPFDFSEGESELVSGFNIEYGSGGFALLFISEYASIIFIS 235
Cdd:COG0650 155 STSLSDIVAYQAAHGPLLLSPSLLLaaiAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLL 234

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62161321 236 SLTVIIFFGGDFYSFIFFYQVNFFCFLFI------WVRCSFPRFRYDKLMYLAWKCYLPISLSFIIFFV 298
Cdd:COG0650 235 SLFVNLFLPWGIALTLLLALLLFLLKLLVlavllaVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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