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Conserved domains on  [gi|827044645|ref|YP_803521|]
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major polyhedral calyx protein [Anticarsia gemmatalis nucleopolyhedrovirus]

Protein Classification

Baculo_PEP_N and Baculo_PEP_C domain-containing protein( domain architecture ID 10266740)

Baculo_PEP_N and Baculo_PEP_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Baculo_PEP_C pfam04513
Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline ...
 143-249 5.67e-29

Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


:

Pssm-ID: 309591 [Multi-domain]  Cd Length: 140  Bit Score: 107.44  E-value: 5.67e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645  143 INSVNQISLNQSNQFLEL-------RTQYAQIMAALESAKDTILNRLNVLVDEIKAALPDQSAQLQEQIDKLLEAINVVA 215
Cdd:pfam04513   1 LNDVNQLNGNGGNQFLELtnvlnaiRLQNVQIAAQLTTLLDAIETQLNDLSTDLTSLLADLDTRLDTLLTNLTDALNQLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 827044645  216 QTLRSEMNNTNSILTNLASSITNINSTLNNLLNA 249
Cdd:pfam04513  81 DTLRNELTNLNSILNNLTSSVTNINSTLNNLLQA 114
Baculo_PEP_N super family cl04556
Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline ...
 14-96 5.29e-15

Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


The actual alignment was detected with superfamily member pfam04512:

Pssm-ID: 398289  Cd Length: 91  Bit Score: 68.80  E-value: 5.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   14 VMWIDADYIFQNSKMPLstfQQLLFSIPSKHRKMINDIGnpPSCSfppsnNTVKYMVDIYGAAVLTMR------CPSLFS 87
Cdd:pfam04512  13 ALWVGADEILSILKMPL---QQALFTLPSSEKKLWRQLE--PSCH-----NTNKYFITILGVAVLVGRttlcniVSFKRA 82


                  ....*....
gi 827044645   88 DQLLTTFIA 96
Cdd:pfam04512  83 DDLISTFIA 91
 
Name Accession Description Interval E-value
Baculo_PEP_C pfam04513
Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline ...
 143-249 5.67e-29

Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


Pssm-ID: 309591 [Multi-domain]  Cd Length: 140  Bit Score: 107.44  E-value: 5.67e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645  143 INSVNQISLNQSNQFLEL-------RTQYAQIMAALESAKDTILNRLNVLVDEIKAALPDQSAQLQEQIDKLLEAINVVA 215
Cdd:pfam04513   1 LNDVNQLNGNGGNQFLELtnvlnaiRLQNVQIAAQLTTLLDAIETQLNDLSTDLTSLLADLDTRLDTLLTNLTDALNQLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 827044645  216 QTLRSEMNNTNSILTNLASSITNINSTLNNLLNA 249
Cdd:pfam04513  81 DTLRNELTNLNSILNNLTSSVTNINSTLNNLLQA 114
Baculo_PEP_N pfam04512
Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline ...
 14-96 5.29e-15

Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


Pssm-ID: 398289  Cd Length: 91  Bit Score: 68.80  E-value: 5.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   14 VMWIDADYIFQNSKMPLstfQQLLFSIPSKHRKMINDIGnpPSCSfppsnNTVKYMVDIYGAAVLTMR------CPSLFS 87
Cdd:pfam04512  13 ALWVGADEILSILKMPL---QQALFTLPSSEKKLWRQLE--PSCH-----NTNKYFITILGVAVLVGRttlcniVSFKRA 82


                  ....*....
gi 827044645   88 DQLLTTFIA 96
Cdd:pfam04512  83 DDLISTFIA 91
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 130-248 5.94e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 5.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   130 DALEKLAHQNDLLINSVNQISLNQSNQFLELRTQYAQIMAALESAKDTILN----------RLNVLVDEIKAALpDQSAQ 199
Cdd:TIGR02168  708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieeleeRLEEAEEELAEAE-AEIEE 786

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 827044645   200 LQEQIDKLLEAInvvaQTLRSEMNNTNSILTNLASSITNINSTLNNLLN 248
Cdd:TIGR02168  787 LEAQIEQLKEEL----KALREALDELRAELTLLNEEAANLRERLESLER 831
 
Name Accession Description Interval E-value
Baculo_PEP_C pfam04513
Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline ...
 143-249 5.67e-29

Baculovirus polyhedron envelope protein, PEP, C terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


Pssm-ID: 309591 [Multi-domain]  Cd Length: 140  Bit Score: 107.44  E-value: 5.67e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645  143 INSVNQISLNQSNQFLEL-------RTQYAQIMAALESAKDTILNRLNVLVDEIKAALPDQSAQLQEQIDKLLEAINVVA 215
Cdd:pfam04513   1 LNDVNQLNGNGGNQFLELtnvlnaiRLQNVQIAAQLTTLLDAIETQLNDLSTDLTSLLADLDTRLDTLLTNLTDALNQLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 827044645  216 QTLRSEMNNTNSILTNLASSITNINSTLNNLLNA 249
Cdd:pfam04513  81 DTLRNELTNLNSILNNLTSSVTNINSTLNNLLQA 114
Baculo_PEP_N pfam04512
Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline ...
 14-96 5.29e-15

Baculovirus polyhedron envelope protein, PEP, N terminus; Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilize polyhedra and protect them from fusion or aggregation.


Pssm-ID: 398289  Cd Length: 91  Bit Score: 68.80  E-value: 5.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   14 VMWIDADYIFQNSKMPLstfQQLLFSIPSKHRKMINDIGnpPSCSfppsnNTVKYMVDIYGAAVLTMR------CPSLFS 87
Cdd:pfam04512  13 ALWVGADEILSILKMPL---QQALFTLPSSEKKLWRQLE--PSCH-----NTNKYFITILGVAVLVGRttlcniVSFKRA 82


                  ....*....
gi 827044645   88 DQLLTTFIA 96
Cdd:pfam04512  83 DDLISTFIA 91
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 125-218 2.32e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 45.60  E-value: 2.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   125 QKQIVDALEKLAHQNDLLINSVNQISLNQSNQFLELRTQYAQIMAALESAKDTILNRLNVLVDEIKAALPDQSAQLQEQI 204
Cdd:pfam12128  677 KDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWY 756

                           90
                   ....*....|....
gi 827044645   205 DKLLEAINVVAQTL 218
Cdd:pfam12128  757 KRDLASLGVDPDVI 770
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 130-248 5.94e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 5.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827044645   130 DALEKLAHQNDLLINSVNQISLNQSNQFLELRTQYAQIMAALESAKDTILN----------RLNVLVDEIKAALpDQSAQ 199
Cdd:TIGR02168  708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieeleeRLEEAEEELAEAE-AEIEE 786

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 827044645   200 LQEQIDKLLEAInvvaQTLRSEMNNTNSILTNLASSITNINSTLNNLLN 248
Cdd:TIGR02168  787 LEAQIEQLKEEL----KALREALDELRAELTLLNEEAANLRERLESLER 831
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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