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Conserved domains on  [gi|4557433|ref|NP_000065|]
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CD40 ligand [Homo sapiens]

Protein Classification

TNF domain-containing protein( domain architecture ID 10641272)

TNF domain-containing protein similar to Homo sapiens lymphotoxin-alpha, which acts as cytokine that in its homotrimeric form binds to TNFRSF1A/TNFR1, TNFRSF1B/TNFBR and TNFRSF14/HVEM

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TNF smart00207
Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric ...
 138-261 1.14e-38

Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.


:

Pssm-ID: 214557  Cd Length: 125  Bit Score: 131.32  E-value: 1.14e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433     138 LQWAEKGYYTMSNNLVTLENGkQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR-FERILLRAANTH--SS 214
Cdd:smart00207   1 LSWESDRGLASLLSGMELQNG-ELVVPRDGLYYIYSQVYFRGQGCNGKSVELSLSLHLRKPSYpLPLLLLEAARSScwSA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 4557433     215 AKPCGQQSIhLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
Cdd:smart00207  80 SSAWKDSVY-LGGLFPLTAGDRLSVNVTEPSLVDLAPGATFFGAFLV 125
 
Name Accession Description Interval E-value
TNF smart00207
Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric ...
 138-261 1.14e-38

Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.


Pssm-ID: 214557  Cd Length: 125  Bit Score: 131.32  E-value: 1.14e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433     138 LQWAEKGYYTMSNNLVTLENGkQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR-FERILLRAANTH--SS 214
Cdd:smart00207   1 LSWESDRGLASLLSGMELQNG-ELVVPRDGLYYIYSQVYFRGQGCNGKSVELSLSLHLRKPSYpLPLLLLEAARSScwSA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 4557433     215 AKPCGQQSIhLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
Cdd:smart00207  80 SSAWKDSVY-LGGLFPLTAGDRLSVNVTEPSLVDLAPGATFFGAFLV 125
TNF pfam00229
TNF(Tumour Necrosis Factor) family;
138-261 1.88e-37

TNF(Tumour Necrosis Factor) family;


Pssm-ID: 425540  Cd Length: 127  Bit Score: 128.20  E-value: 1.88e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433    138 LQWAEKGYYTMSNNLVTLENGKqLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR-FERILLRAANTHSSAK 216
Cdd:pfam00229   1 LSWESDRGGAFLLNGVTYSNGE-LVVPQAGLYYVYSQVYFRGEGCPSGSVPLTHYLYKFSSSYpGPVLLLKGAESPCSSE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 4557433    217 PC--GQQSIHLGGVFELQPGASVFVNVTDPSQVSHGT-GFTSFGLLKL 261
Cdd:pfam00229  80 NPeyWYQSIYLGGLFELRAGDRLSVNVSNPSLVDLSApGKTYFGAFLL 127
TNF cd00184
Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT ...
 122-259 4.53e-34

Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.


Pssm-ID: 238108  Cd Length: 137  Bit Score: 119.76  E-value: 4.53e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433  122 IAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGkQLTVKRQGLYYIYAQVTFCSNreASSQAPFIASLCLKSPGR- 200
Cdd:cd00184   1 PAAHLIGTNSSSGGTGLSWESDDGRAFLSGGLELQNG-ELVVPQDGLYYIYSQVYFRGQ--CCSTLSVSHVLQLRTDSYp 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433  201 FERILLRAANTH-SSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLL 259
Cdd:cd00184  78 EPILLLKGIRSVcSSVSEGWYNSVYLGGLFQLRAGDRLSVNVSAPALLDLSQGTTFFGAF 137
 
Name Accession Description Interval E-value
TNF smart00207
Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric ...
 138-261 1.14e-38

Tumour necrosis factor family; Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.


Pssm-ID: 214557  Cd Length: 125  Bit Score: 131.32  E-value: 1.14e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433     138 LQWAEKGYYTMSNNLVTLENGkQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR-FERILLRAANTH--SS 214
Cdd:smart00207   1 LSWESDRGLASLLSGMELQNG-ELVVPRDGLYYIYSQVYFRGQGCNGKSVELSLSLHLRKPSYpLPLLLLEAARSScwSA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 4557433     215 AKPCGQQSIhLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
Cdd:smart00207  80 SSAWKDSVY-LGGLFPLTAGDRLSVNVTEPSLVDLAPGATFFGAFLV 125
TNF pfam00229
TNF(Tumour Necrosis Factor) family;
138-261 1.88e-37

TNF(Tumour Necrosis Factor) family;


Pssm-ID: 425540  Cd Length: 127  Bit Score: 128.20  E-value: 1.88e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433    138 LQWAEKGYYTMSNNLVTLENGKqLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR-FERILLRAANTHSSAK 216
Cdd:pfam00229   1 LSWESDRGGAFLLNGVTYSNGE-LVVPQAGLYYVYSQVYFRGEGCPSGSVPLTHYLYKFSSSYpGPVLLLKGAESPCSSE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 4557433    217 PC--GQQSIHLGGVFELQPGASVFVNVTDPSQVSHGT-GFTSFGLLKL 261
Cdd:pfam00229  80 NPeyWYQSIYLGGLFELRAGDRLSVNVSNPSLVDLSApGKTYFGAFLL 127
TNF cd00184
Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT ...
 122-259 4.53e-34

Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.


Pssm-ID: 238108  Cd Length: 137  Bit Score: 119.76  E-value: 4.53e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433  122 IAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGkQLTVKRQGLYYIYAQVTFCSNreASSQAPFIASLCLKSPGR- 200
Cdd:cd00184   1 PAAHLIGTNSSSGGTGLSWESDDGRAFLSGGLELQNG-ELVVPQDGLYYIYSQVYFRGQ--CCSTLSVSHVLQLRTDSYp 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 4557433  201 FERILLRAANTH-SSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLL 259
Cdd:cd00184  78 EPILLLKGIRSVcSSVSEGWYNSVYLGGLFQLRAGDRLSVNVSAPALLDLSQGTTFFGAF 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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