|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1446-1552 |
1.23e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 205.91 E-value: 1.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1446 FVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCNVNDVCNFASrNDYSYWLST 1525
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 89142730 1526 PAL---MPMNMAPITGRALEPYISRCTVCE 1552
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1556-1667 |
5.22e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 203.98 E-value: 5.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1556 IAIAVHSQTTDIPPCPHGWISLWKGFSFIMFTSAGsEGTGQALASPGSCLEEFRASPFLECHGRGTCNYYSNSYSFWLAS 1635
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 89142730 1636 lnPERMFRKPIPSTVKAG-ELEKIISRCQVCMK 1667
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGnELRSYISRCVVCEA 110
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
925-1205 |
4.54e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 92.28 E-value: 4.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 925 GQRGTPGAKGEQGDKGNPGPSeishviGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGlkglpgpagppgPRGDLGSTGN 1004
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR------GDRGETGPAGPAGPPGPQGERGEKGPAGPQG------------EAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1005 PGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGysegtrpgppgptgdpglpgdMGKKGE 1084
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG---------------------DGQQGP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRgppglpgfpgspgpmgirGDQGRDGIPG 1164
Cdd:NF038329 238 DGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKD------------------GQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 1165 PAGEKGETGLLRApPGPRGNPGAQGAKGDRGAPGFPGLPGR 1205
Cdd:NF038329 300 KDGKDGQNGKDGL-PGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1167-1436 |
4.40e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1167 GEKGETGllraPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEgfpgppglpgaiipGQTGNRGPPGS 1246
Cdd:NF038329 117 GEKGEPG----PAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQ--------------GEAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1247 RGSPgapgppgppgshviGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGfPGVKGEKGNPGF 1326
Cdd:NF038329 179 DGEA--------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGP 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1327 LGSIGPPGPIGPKGPPGVRGDPGtlkiislpgspgppgtpgepgmqgEPGPPGPPGNLGPCGPRGKPGKD---GKPGTPG 1403
Cdd:NF038329 244 TGEDGPQGPDGPAGKDGPRGDRG------------------------EAGPDGPDGKDGERGPVGPAGKDgqnGKDGLPG 299
|
250 260 270
....*....|....*....|....*....|...
gi 89142730 1404 PAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSG 1436
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
62-342 |
4.68e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 62 QKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTL 141
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 142 GYPGIPGAAGLKGQKGapakeEDIELDAKGDPGlpgapgpqglpgppgfpgpvgppgppgffgfpgAMGPRGPKGHMGER 221
Cdd:NF038329 192 GPQGPRGETGPAGEQG-----PAGPAGPDGEAG---------------------------------PAGEDGPAGPAGDG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 222 VIGHKGERGVKGLTGPPgppgtvivtltGPDNRTDLKGEKGDKGAMGEPGPPGPSGlpgesygsEKGAPGDPGLQGKPGK 301
Cdd:NF038329 234 QQGPDGDPGPTGEDGPQ-----------GPDGPAGKDGPRGDRGEAGPDGPDGKDG--------ERGPVGPAGKDGQNGK 294
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 302 DGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Cdd:NF038329 295 DGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
713-958 |
5.37e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 5.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 713 FPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAmpggpGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRG 792
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPA-----GPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 793 DPGQpgppgeqgppgrciEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGfpgETGSPGIPGHQGEMGPLGQ 872
Cdd:NF038329 190 EKGP--------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDG---QQGPDGDPGPTGEDGPQGP 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Cdd:NF038329 253 DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
....*.
gi 89142730 953 DKGEPG 958
Cdd:NF038329 333 KDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
257-528 |
2.34e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.93 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 257 LKGEKGDKGAMGEPGPPGPSGLPGESygSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIG 336
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDR--GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 337 PPGFRGPTeyydtyQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDamGT 416
Cdd:NF038329 193 PQGPRGET------GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPR--GD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 417 PGSPGCAGSPGLPGspgppgppgdivfRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLlctqcpyipgppglpglpglhg 496
Cdd:NF038329 265 RGEAGPDGPDGKDG-------------ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGK---------------------- 309
|
250 260 270
....*....|....*....|....*....|..
gi 89142730 497 vKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFP 528
Cdd:NF038329 310 -DGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
509-739 |
7.08e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 509 LKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQ--PEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGEl 586
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPpgPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 587 alSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGelsvstpVPGPPGPPGPPGH 666
Cdd:NF038329 194 --QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQG-------PDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89142730 667 PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQ-GFPGTKGSLGCPGKMGEPGLPGKPGLPG 739
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKdGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1446-1552 |
1.23e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 205.91 E-value: 1.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1446 FVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCNVNDVCNFASrNDYSYWLST 1525
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 89142730 1526 PAL---MPMNMAPITGRALEPYISRCTVCE 1552
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1556-1667 |
5.22e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 203.98 E-value: 5.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1556 IAIAVHSQTTDIPPCPHGWISLWKGFSFIMFTSAGsEGTGQALASPGSCLEEFRASPFLECHGRGTCNYYSNSYSFWLAS 1635
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 89142730 1636 lnPERMFRKPIPSTVKAG-ELEKIISRCQVCMK 1667
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGnELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1445-1554 |
1.22e-57 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 194.53 E-value: 1.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1445 GFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCNVNDVCNFASRNDYSYWLS 1524
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 89142730 1525 T-----PALMPMNMAPITGrALEPYISRCTVCEGP 1554
Cdd:smart00111 81 TiepsdQFTAPRPMTPKAG-DLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1555-1667 |
3.27e-56 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 190.29 E-value: 3.27e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1555 AIAIAVHSQTTDIPPCPHGWISLWKGFSFIMFTsAGSEGTGQALASPGSCLEEFRASPFLECHGRGTCNYYS-NSYSFWL 1633
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....
gi 89142730 1634 ASLNPERMFRKPIPSTVKAGELEKIISRCQVCMK 1667
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
925-1205 |
4.54e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 92.28 E-value: 4.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 925 GQRGTPGAKGEQGDKGNPGPSeishviGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGlkglpgpagppgPRGDLGSTGN 1004
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR------GDRGETGPAGPAGPPGPQGERGEKGPAGPQG------------EAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1005 PGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGysegtrpgppgptgdpglpgdMGKKGE 1084
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG---------------------DGQQGP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRgppglpgfpgspgpmgirGDQGRDGIPG 1164
Cdd:NF038329 238 DGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKD------------------GQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 1165 PAGEKGETGLLRApPGPRGNPGAQGAKGDRGAPGFPGLPGR 1205
Cdd:NF038329 300 KDGKDGQNGKDGL-PGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
821-1114 |
5.15e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.89 E-value: 5.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 821 GLNGLKGQqGRRGKTGPKGDPGIPGLdrsgfPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMgfpgai 900
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGE-----QGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA------ 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 901 gppgppGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPseishvigdKGEPGLKGFAGNPGE--KGNRGVPGMP 978
Cdd:NF038329 177 ------GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---------DGEAGPAGEDGPAGPagDGQQGPDGDP 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 979 GLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGy 1058
Cdd:NF038329 242 GPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDG- 320
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 89142730 1059 segtrpgppgPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGK 1114
Cdd:NF038329 321 ----------QPGKDGLPGKDGKDGQPGKPAPKTPEVPQKPDTAPHTPKTPQIPGQ 366
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1080-1325 |
4.53e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.56 E-value: 4.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1080 GKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGllgppgirgppglpgfpgspgpmgirgDQGR 1159
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------------------------PQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1160 DGIPGPAGEKGETGLlRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTG 1239
Cdd:NF038329 170 AGPQGPAGKDGEAGA-KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDG 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1240 NRGPPGSRGSPGAPGPPGPPGSHviGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKG 1319
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPD--GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDG 326
|
....*.
gi 89142730 1320 EKGNPG 1325
Cdd:NF038329 327 LPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1167-1436 |
4.40e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1167 GEKGETGllraPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEgfpgppglpgaiipGQTGNRGPPGS 1246
Cdd:NF038329 117 GEKGEPG----PAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQ--------------GEAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1247 RGSPgapgppgppgshviGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGfPGVKGEKGNPGF 1326
Cdd:NF038329 179 DGEA--------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGP 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1327 LGSIGPPGPIGPKGPPGVRGDPGtlkiislpgspgppgtpgepgmqgEPGPPGPPGNLGPCGPRGKPGKD---GKPGTPG 1403
Cdd:NF038329 244 TGEDGPQGPDGPAGKDGPRGDRG------------------------EAGPDGPDGKDGERGPVGPAGKDgqnGKDGLPG 299
|
250 260 270
....*....|....*....|....*....|...
gi 89142730 1404 PAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSG 1436
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
62-342 |
4.68e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 62 QKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTL 141
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 142 GYPGIPGAAGLKGQKGapakeEDIELDAKGDPGlpgapgpqglpgppgfpgpvgppgppgffgfpgAMGPRGPKGHMGER 221
Cdd:NF038329 192 GPQGPRGETGPAGEQG-----PAGPAGPDGEAG---------------------------------PAGEDGPAGPAGDG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 222 VIGHKGERGVKGLTGPPgppgtvivtltGPDNRTDLKGEKGDKGAMGEPGPPGPSGlpgesygsEKGAPGDPGLQGKPGK 301
Cdd:NF038329 234 QQGPDGDPGPTGEDGPQ-----------GPDGPAGKDGPRGDRGEAGPDGPDGKDG--------ERGPVGPAGKDGQNGK 294
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 302 DGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Cdd:NF038329 295 DGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1155-1427 |
9.91e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 9.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1155 GDQGRDGIPGPAGEKGETGllraPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAii 1234
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQG----PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-- 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHviGIKGDKGSMGHPGPkgppgtaGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAGPDGEA--GPAGEDGPAGPAGD-------GQQGPDGDPGPTGEDGPQGPDGPAGKDGP 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGtlkiislpgspgppgtpgepgmqgepgppgppgnlgPCGPRGKPG 1394
Cdd:NF038329 262 RGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG------------------------------------LPGKDGKDG 305
|
250 260 270
....*....|....*....|....*....|...
gi 89142730 1395 KDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPG 1427
Cdd:NF038329 306 QNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
713-958 |
5.37e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 5.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 713 FPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAmpggpGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRG 792
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPA-----GPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 793 DPGQpgppgeqgppgrciEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGfpgETGSPGIPGHQGEMGPLGQ 872
Cdd:NF038329 190 EKGP--------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDG---QQGPDGDPGPTGEDGPQGP 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Cdd:NF038329 253 DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
....*.
gi 89142730 953 DKGEPG 958
Cdd:NF038329 333 KDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
257-528 |
2.34e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.93 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 257 LKGEKGDKGAMGEPGPPGPSGLPGESygSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIG 336
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDR--GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 337 PPGFRGPTeyydtyQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDamGT 416
Cdd:NF038329 193 PQGPRGET------GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPR--GD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 417 PGSPGCAGSPGLPGspgppgppgdivfRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLlctqcpyipgppglpglpglhg 496
Cdd:NF038329 265 RGEAGPDGPDGKDG-------------ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGK---------------------- 309
|
250 260 270
....*....|....*....|....*....|..
gi 89142730 497 vKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFP 528
Cdd:NF038329 310 -DGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
369-593 |
2.58e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.54 E-value: 2.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 369 GPQGPSGPPGVpgspgssrPGLRGAPGWPGLKGSKGERGRPGKD-AMGTPGSPGCAGSPGLPGSpgppgppgdivfrKGP 447
Cdd:NF038329 129 GPAGEQGPRGD--------RGETGPAGPAGPPGPQGERGEKGPAgPQGEAGPQGPAGKDGEAGA-------------KGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 448 PGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF 527
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE 267
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 89142730 528 PGAQGDPGLKGEKGETLQP--EGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKG 593
Cdd:NF038329 268 AGPDGPDGKDGERGPVGPAgkDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
509-739 |
7.08e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 509 LKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQ--PEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGEl 586
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPpgPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 587 alSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGelsvstpVPGPPGPPGPPGH 666
Cdd:NF038329 194 --QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQG-------PDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89142730 667 PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQ-GFPGTKGSLGCPGKMGEPGLPGKPGLPG 739
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKdGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-157 |
5.46e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 60.30 E-value: 5.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 35 DKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNt 114
Cdd:NF038329 154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD- 232
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 89142730 115 GPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKG 157
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
42-308 |
8.29e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 59.92 E-value: 8.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 42 DGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVG 121
Cdd:NF038329 140 RGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 122 VPGCSGSKGEQGfPGLPGTLGYPGIPGAAGLKGQKGAPAKEedielDAKGDPGLPGAPGPQGLPgppgfpgpvgppgppg 201
Cdd:NF038329 220 PAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKD-----GPRGDRGEAGPDGPDGKD---------------- 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 202 ffgfpgamGPRGPKGHMGERviGHKGERGVKGLTgppgppgtvivtltGPDNRTDLKGEKGDKGamgepgppgpsglpge 281
Cdd:NF038329 278 --------GERGPVGPAGKD--GQNGKDGLPGKD--------------GKDGQNGKDGLPGKDG---------------- 317
|
250 260
....*....|....*....|....*..
gi 89142730 282 sygsEKGAPGDPGLQGKPGKDGVPGFP 308
Cdd:NF038329 318 ----KDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
680-879 |
4.54e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.61 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 680 GKCGDPGLPGPDGEPGIPGIGFPgppgpKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPG 759
Cdd:NF038329 168 GEAGPQGPAGKDGEAGAKGPAGE-----KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPG 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDpgqpgppgeqgppgrciEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Cdd:NF038329 243 PTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK-----------------DGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 89142730 840 DPGIPGLdrsgfPGETGSPGIPGHQGEMGPLGQRGYPGNP 879
Cdd:NF038329 306 QNGKDGL-----PGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
67-123 |
4.57e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.57e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 89142730 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVP 123
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1390-1438 |
1.30e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.30e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 89142730 1390 RGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Cdd:pfam01391 6 PGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
852-1115 |
1.53e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPG 931
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 932 AKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR 1011
Cdd:COG5164 86 NQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGST 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1012 GIPGSMGNMGMPGSKGKrGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLpgdmGKKGEMGQPGPP 1091
Cdd:COG5164 166 TPPGPGGSTTPPDDGGS-TTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT----GPKDQRPKTNPI 240
|
250 260
....*....|....*....|....
gi 89142730 1092 GHLGPAGPEGAPGSPGSPGLPGKP 1115
Cdd:COG5164 241 ERRGPERPEAAALPAELTALEAEN 264
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
833-885 |
5.57e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 5.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 89142730 833 GKTGPKGDPGIPGldRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPP 885
Cdd:pfam01391 1 GPPGPPGPPGPPG--PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-111 |
6.24e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.04 E-value: 6.24e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89142730 35 DKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTP 111
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1446-1552 |
1.23e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 205.91 E-value: 1.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1446 FVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCNVNDVCNFASrNDYSYWLST 1525
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 89142730 1526 PAL---MPMNMAPITGRALEPYISRCTVCE 1552
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1556-1667 |
5.22e-61 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 203.98 E-value: 5.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1556 IAIAVHSQTTDIPPCPHGWISLWKGFSFIMFTSAGsEGTGQALASPGSCLEEFRASPFLECHGRGTCNYYSNSYSFWLAS 1635
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 89142730 1636 lnPERMFRKPIPSTVKAG-ELEKIISRCQVCMK 1667
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGnELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1445-1554 |
1.22e-57 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 194.53 E-value: 1.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1445 GFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCNVNDVCNFASRNDYSYWLS 1524
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 89142730 1525 T-----PALMPMNMAPITGrALEPYISRCTVCEGP 1554
Cdd:smart00111 81 TiepsdQFTAPRPMTPKAG-DLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1555-1667 |
3.27e-56 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 190.29 E-value: 3.27e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1555 AIAIAVHSQTTDIPPCPHGWISLWKGFSFIMFTsAGSEGTGQALASPGSCLEEFRASPFLECHGRGTCNYYS-NSYSFWL 1633
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....
gi 89142730 1634 ASLNPERMFRKPIPSTVKAGELEKIISRCQVCMK 1667
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
925-1205 |
4.54e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 92.28 E-value: 4.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 925 GQRGTPGAKGEQGDKGNPGPSeishviGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGlkglpgpagppgPRGDLGSTGN 1004
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR------GDRGETGPAGPAGPPGPQGERGEKGPAGPQG------------EAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1005 PGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGysegtrpgppgptgdpglpgdMGKKGE 1084
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG---------------------DGQQGP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRgppglpgfpgspgpmgirGDQGRDGIPG 1164
Cdd:NF038329 238 DGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKD------------------GQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 1165 PAGEKGETGLLRApPGPRGNPGAQGAKGDRGAPGFPGLPGR 1205
Cdd:NF038329 300 KDGKDGQNGKDGL-PGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
821-1114 |
5.15e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.89 E-value: 5.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 821 GLNGLKGQqGRRGKTGPKGDPGIPGLdrsgfPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMgfpgai 900
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGE-----QGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA------ 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 901 gppgppGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPseishvigdKGEPGLKGFAGNPGE--KGNRGVPGMP 978
Cdd:NF038329 177 ------GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---------DGEAGPAGEDGPAGPagDGQQGPDGDP 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 979 GLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGy 1058
Cdd:NF038329 242 GPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDG- 320
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 89142730 1059 segtrpgppgPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGK 1114
Cdd:NF038329 321 ----------QPGKDGLPGKDGKDGQPGKPAPKTPEVPQKPDTAPHTPKTPQIPGQ 366
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1080-1325 |
4.53e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.56 E-value: 4.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1080 GKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGllgppgirgppglpgfpgspgpmgirgDQGR 1159
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------------------------PQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1160 DGIPGPAGEKGETGLlRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTG 1239
Cdd:NF038329 170 AGPQGPAGKDGEAGA-KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDG 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1240 NRGPPGSRGSPGAPGPPGPPGSHviGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKG 1319
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPD--GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDG 326
|
....*.
gi 89142730 1320 EKGNPG 1325
Cdd:NF038329 327 LPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1167-1436 |
4.40e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1167 GEKGETGllraPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEgfpgppglpgaiipGQTGNRGPPGS 1246
Cdd:NF038329 117 GEKGEPG----PAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQ--------------GEAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1247 RGSPgapgppgppgshviGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGfPGVKGEKGNPGF 1326
Cdd:NF038329 179 DGEA--------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGP 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1327 LGSIGPPGPIGPKGPPGVRGDPGtlkiislpgspgppgtpgepgmqgEPGPPGPPGNLGPCGPRGKPGKD---GKPGTPG 1403
Cdd:NF038329 244 TGEDGPQGPDGPAGKDGPRGDRG------------------------EAGPDGPDGKDGERGPVGPAGKDgqnGKDGLPG 299
|
250 260 270
....*....|....*....|....*....|...
gi 89142730 1404 PAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSG 1436
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
62-342 |
4.68e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.48 E-value: 4.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 62 QKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTL 141
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 142 GYPGIPGAAGLKGQKGapakeEDIELDAKGDPGlpgapgpqglpgppgfpgpvgppgppgffgfpgAMGPRGPKGHMGER 221
Cdd:NF038329 192 GPQGPRGETGPAGEQG-----PAGPAGPDGEAG---------------------------------PAGEDGPAGPAGDG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 222 VIGHKGERGVKGLTGPPgppgtvivtltGPDNRTDLKGEKGDKGAMGEPGPPGPSGlpgesygsEKGAPGDPGLQGKPGK 301
Cdd:NF038329 234 QQGPDGDPGPTGEDGPQ-----------GPDGPAGKDGPRGDRGEAGPDGPDGKDG--------ERGPVGPAGKDGQNGK 294
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 89142730 302 DGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Cdd:NF038329 295 DGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1155-1427 |
9.91e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 9.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1155 GDQGRDGIPGPAGEKGETGllraPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAii 1234
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQG----PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-- 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHviGIKGDKGSMGHPGPkgppgtaGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAGPDGEA--GPAGEDGPAGPAGD-------GQQGPDGDPGPTGEDGPQGPDGPAGKDGP 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGtlkiislpgspgppgtpgepgmqgepgppgppgnlgPCGPRGKPG 1394
Cdd:NF038329 262 RGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG------------------------------------LPGKDGKDG 305
|
250 260 270
....*....|....*....|....*....|...
gi 89142730 1395 KDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPG 1427
Cdd:NF038329 306 QNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
713-958 |
5.37e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 5.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 713 FPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAmpggpGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRG 792
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPA-----GPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 793 DPGQpgppgeqgppgrciEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGfpgETGSPGIPGHQGEMGPLGQ 872
Cdd:NF038329 190 EKGP--------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDG---QQGPDGDPGPTGEDGPQGP 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Cdd:NF038329 253 DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
....*.
gi 89142730 953 DKGEPG 958
Cdd:NF038329 333 KDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
257-528 |
2.34e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.93 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 257 LKGEKGDKGAMGEPGPPGPSGLPGESygSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIG 336
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDR--GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 337 PPGFRGPTeyydtyQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDamGT 416
Cdd:NF038329 193 PQGPRGET------GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPR--GD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 417 PGSPGCAGSPGLPGspgppgppgdivfRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLlctqcpyipgppglpglpglhg 496
Cdd:NF038329 265 RGEAGPDGPDGKDG-------------ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGK---------------------- 309
|
250 260 270
....*....|....*....|....*....|..
gi 89142730 497 vKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFP 528
Cdd:NF038329 310 -DGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
369-593 |
2.58e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.54 E-value: 2.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 369 GPQGPSGPPGVpgspgssrPGLRGAPGWPGLKGSKGERGRPGKD-AMGTPGSPGCAGSPGLPGSpgppgppgdivfrKGP 447
Cdd:NF038329 129 GPAGEQGPRGD--------RGETGPAGPAGPPGPQGERGEKGPAgPQGEAGPQGPAGKDGEAGA-------------KGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 448 PGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF 527
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE 267
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 89142730 528 PGAQGDPGLKGEKGETLQP--EGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKG 593
Cdd:NF038329 268 AGPDGPDGKDGERGPVGPAgkDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
509-739 |
7.08e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 509 LKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQ--PEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGEl 586
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPpgPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 587 alSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGelsvstpVPGPPGPPGPPGH 666
Cdd:NF038329 194 --QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQG-------PDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89142730 667 PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQ-GFPGTKGSLGCPGKMGEPGLPGKPGLPG 739
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKdGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-157 |
5.46e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 60.30 E-value: 5.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 35 DKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNt 114
Cdd:NF038329 154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD- 232
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 89142730 115 GPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKG 157
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
42-308 |
8.29e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 59.92 E-value: 8.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 42 DGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVG 121
Cdd:NF038329 140 RGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 122 VPGCSGSKGEQGfPGLPGTLGYPGIPGAAGLKGQKGAPAKEedielDAKGDPGLPGAPGPQGLPgppgfpgpvgppgppg 201
Cdd:NF038329 220 PAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKD-----GPRGDRGEAGPDGPDGKD---------------- 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 202 ffgfpgamGPRGPKGHMGERviGHKGERGVKGLTgppgppgtvivtltGPDNRTDLKGEKGDKGamgepgppgpsglpge 281
Cdd:NF038329 278 --------GERGPVGPAGKD--GQNGKDGLPGKD--------------GKDGQNGKDGLPGKDG---------------- 317
|
250 260
....*....|....*....|....*..
gi 89142730 282 sygsEKGAPGDPGLQGKPGKDGVPGFP 308
Cdd:NF038329 318 ----KDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
680-879 |
4.54e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.61 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 680 GKCGDPGLPGPDGEPGIPGIGFPgppgpKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPG 759
Cdd:NF038329 168 GEAGPQGPAGKDGEAGAKGPAGE-----KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPG 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDpgqpgppgeqgppgrciEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Cdd:NF038329 243 PTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK-----------------DGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 89142730 840 DPGIPGLdrsgfPGETGSPGIPGHQGEMGPLGQRGYPGNP 879
Cdd:NF038329 306 QNGKDGL-----PGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
67-123 |
4.57e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.57e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 89142730 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVP 123
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
70-124 |
1.05e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 89142730 70 GLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPG 124
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
286-339 |
1.23e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 89142730 286 EKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPG 339
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1390-1438 |
1.30e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.30e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 89142730 1390 RGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Cdd:pfam01391 6 PGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
852-1115 |
1.53e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPG 931
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 932 AKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR 1011
Cdd:COG5164 86 NQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGST 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89142730 1012 GIPGSMGNMGMPGSKGKrGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLpgdmGKKGEMGQPGPP 1091
Cdd:COG5164 166 TPPGPGGSTTPPDDGGS-TTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT----GPKDQRPKTNPI 240
|
250 260
....*....|....*....|....
gi 89142730 1092 GHLGPAGPEGAPGSPGSPGLPGKP 1115
Cdd:COG5164 241 ERRGPERPEAAALPAELTALEAEN 264
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1390-1438 |
2.02e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 2.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 89142730 1390 RGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
100-155 |
3.98e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.09 E-value: 3.98e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 89142730 100 GFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
833-885 |
5.57e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 5.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 89142730 833 GKTGPKGDPGIPGldRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPP 885
Cdd:pfam01391 1 GPPGPPGPPGPPG--PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-111 |
6.24e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.04 E-value: 6.24e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89142730 35 DKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTP 111
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| |
