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Conserved domains on  [gi|15431297|ref|NP_000968|]
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large ribosomal subunit protein eL13 isoform 1 [Homo sapiens]

Protein Classification

60S ribosomal protein L13( domain architecture ID 10472865)

60S ribosomal protein L13 is part of the 60S large ribosomal subunit (LSU) and is required for its formation and the maturation of rRNAs

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L13e pfam01294
Ribosomal protein L13e;
8-187 6.06e-101

Ribosomal protein L13e;


:

Pssm-ID: 460150  Cd Length: 180  Bit Score: 289.45  E-value: 6.06e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297     8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASgPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIH 87
Cdd:pfam01294   1 VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVE-LLRPVVRCPTVRYNTKVRAGRGFTLEELKAAGIN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGP-VMPVRNVYKKEKA 166
Cdd:pfam01294  80 KKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKAATQLSGAaVMPIVQTKKKEKA 159
                         170       180
                  ....*....|....*....|.
gi 15431297   167 RVITEEEKNFKAFASLRMARA 187
Cdd:pfam01294 160 RAITEEEKKFSAYRTLRKARA 180
 
Name Accession Description Interval E-value
Ribosomal_L13e pfam01294
Ribosomal protein L13e;
8-187 6.06e-101

Ribosomal protein L13e;


Pssm-ID: 460150  Cd Length: 180  Bit Score: 289.45  E-value: 6.06e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297     8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASgPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIH 87
Cdd:pfam01294   1 VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVE-LLRPVVRCPTVRYNTKVRAGRGFTLEELKAAGIN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGP-VMPVRNVYKKEKA 166
Cdd:pfam01294  80 KKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKAATQLSGAaVMPIVQTKKKEKA 159
                         170       180
                  ....*....|....*....|.
gi 15431297   167 RVITEEEKNFKAFASLRMARA 187
Cdd:pfam01294 160 RAITEEEKKFSAYRTLRKARA 180
PTZ00352 PTZ00352
60S ribosomal protein L13; Provisional
3-204 1.64e-62

60S ribosomal protein L13; Provisional


Pssm-ID: 240377  Cd Length: 212  Bit Score: 193.40  E-value: 1.64e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    3 PSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPaSGPIRPIVRCPTVRYHTKVRAGRGFSLEELR 82
Cdd:PTZ00352   1 MKHNNVLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRP-VELLRPVVHGPTQRYNMKVRLGRGFTLEELK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297   83 VAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKG------DSSAEELK---LATQLTGP 153
Cdd:PTZ00352  80 AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGfagipaDTSKEEVValpVKQNKNSE 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15431297  154 VMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAE 204
Cdd:PTZ00352 160 VIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEK 210
 
Name Accession Description Interval E-value
Ribosomal_L13e pfam01294
Ribosomal protein L13e;
8-187 6.06e-101

Ribosomal protein L13e;


Pssm-ID: 460150  Cd Length: 180  Bit Score: 289.45  E-value: 6.06e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297     8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASgPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIH 87
Cdd:pfam01294   1 VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVE-LLRPVVRCPTVRYNTKVRAGRGFTLEELKAAGIN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGP-VMPVRNVYKKEKA 166
Cdd:pfam01294  80 KKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKAATQLSGAaVMPIVQTKKKEKA 159
                         170       180
                  ....*....|....*....|.
gi 15431297   167 RVITEEEKNFKAFASLRMARA 187
Cdd:pfam01294 160 RAITEEEKKFSAYRTLRKARA 180
PTZ00352 PTZ00352
60S ribosomal protein L13; Provisional
3-204 1.64e-62

60S ribosomal protein L13; Provisional


Pssm-ID: 240377  Cd Length: 212  Bit Score: 193.40  E-value: 1.64e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    3 PSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPaSGPIRPIVRCPTVRYHTKVRAGRGFSLEELR 82
Cdd:PTZ00352   1 MKHNNVLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRP-VELLRPVVHGPTQRYNMKVRLGRGFTLEELK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297   83 VAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKG------DSSAEELK---LATQLTGP 153
Cdd:PTZ00352  80 AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGfagipaDTSKEEVValpVKQNKNSE 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15431297  154 VMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAE 204
Cdd:PTZ00352 160 VIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEK 210
PTZ00192 PTZ00192
60S ribosomal protein L13; Provisional
7-210 4.94e-46

60S ribosomal protein L13; Provisional


Pssm-ID: 173472  Cd Length: 218  Bit Score: 151.62  E-value: 4.94e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297    7 GMVLKPHFH--KDWQR------RVATWFNQPARKIRRRKARQAKARRIAPRPASGpIRPIVRCPTVRYHTKVRAGRGFSL 78
Cdd:PTZ00192   4 GNNAIPHVHqrKHWNPcssqkgNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLKA-LRPQVNCPTVRHNMKQRLGRGFSL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15431297   79 EELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQ--------- 149
Cdd:PTZ00192  83 AELKAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKVQKGEAKEEEVKAATQdrsrfgdaa 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15431297  150 LTGPVMPVRnvykkEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKK 210
Cdd:PTZ00192 163 VGGVVTPSR-----EAPRVVSKEERSKNVYAFLKKNHSAVRFFGVRSRRAARKEAKKEEKK 218
PRK12277 PRK12277
50S ribosomal protein L13e; Provisional
54-124 5.00e-08

50S ribosomal protein L13e; Provisional


Pssm-ID: 183397  Cd Length: 83  Bit Score: 48.61  E-value: 5.00e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15431297   54 PIRPIVRCPTVRYH-----TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTEslqaNVQRLKEYRSKL 124
Cdd:PRK12277   7 PPKAIVKRPNYRFEyggkrKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLEQL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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