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Conserved domains on  [gi|17105394|ref|NP_000975|]
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large ribosomal subunit protein uL23 [Homo sapiens]

Protein Classification

60S ribosomal protein L23a/L25( domain architecture ID 11488238)

60S ribosomal protein L23a/L25 binds to a specific region on the 26S rRNA; belongs to the universal ribosomal protein uL23 family

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
36-156 1.82e-57

60S ribosomal protein L23a; Provisional


:

Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 176.04  E-value: 1.82e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Cdd:PTZ00191  25 KKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEK 104
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 17105394  116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
Cdd:PTZ00191 105 LYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKIGII 145
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
36-156 1.82e-57

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 176.04  E-value: 1.82e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Cdd:PTZ00191  25 KKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEK 104
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 17105394  116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
Cdd:PTZ00191 105 LYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKIGII 145
uL23_arch TIGR03636
ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein ...
80-156 2.70e-31

ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274692  Cd Length: 77  Bit Score: 107.30  E-value: 2.70e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17105394    80 PLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
Cdd:TIGR03636   1 PLVTEKAMNLIEKENKLTFIVDRRATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYSAEEIASRLGVF 77
Ribosomal_L23 pfam00276
Ribosomal protein L23;
76-145 2.84e-18

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 74.40  E-value: 2.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394    76 IIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLI-------------RPDGEKKAYVRLAP 142
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNvkgkvkrfgrfvgRRSDWKKAIVTLAE 81

                  ...
gi 17105394   143 DYD 145
Cdd:pfam00276  82 GQK 84
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
80-145 2.00e-17

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 72.02  E-value: 2.00e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17105394  80 PLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-------------DGEKKAYVRLAPDYD 145
Cdd:COG0089   3 PVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkkkrfgrrvgkrSDWKKAIVTLAEGQK 81
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
36-156 1.82e-57

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 176.04  E-value: 1.82e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Cdd:PTZ00191  25 KKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEK 104
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 17105394  116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
Cdd:PTZ00191 105 LYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKIGII 145
PRK14548 PRK14548
50S ribosomal protein L23P; Provisional
74-156 3.15e-35

50S ribosomal protein L23P; Provisional


Pssm-ID: 237750  Cd Length: 84  Bit Score: 117.65  E-value: 3.15e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKI 153
Cdd:PRK14548   2 YSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81

                 ...
gi 17105394  154 GII 156
Cdd:PRK14548  82 GVF 84
uL23_arch TIGR03636
ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein ...
80-156 2.70e-31

ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274692  Cd Length: 77  Bit Score: 107.30  E-value: 2.70e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17105394    80 PLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
Cdd:TIGR03636   1 PLVTEKAMNLIEKENKLTFIVDRRATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYSAEEIASRLGVF 77
rplW PRK05738
50S ribosomal protein L23; Reviewed
74-143 1.93e-18

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 74.74  E-value: 1.93e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-------------DGEKKAYVRL 140
Cdd:PRK05738   1 YDVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKgktkrfgrrigkrSDWKKAIVTL 80

                 ...
gi 17105394  141 APD 143
Cdd:PRK05738  81 AEG 83
Ribosomal_L23 pfam00276
Ribosomal protein L23;
76-145 2.84e-18

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 74.40  E-value: 2.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394    76 IIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLI-------------RPDGEKKAYVRLAP 142
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNvkgkvkrfgrfvgRRSDWKKAIVTLAE 81

                  ...
gi 17105394   143 DYD 145
Cdd:pfam00276  82 GQK 84
Ribosomal_L23eN pfam03939
Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the ...
31-66 1.06e-17

Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the eukaryotic ribosomal proteins L25, L23, and L23a.


Pssm-ID: 461099 [Multi-domain]  Cd Length: 50  Bit Score: 71.82  E-value: 1.06e-17
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 17105394    31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAP 66
Cdd:pfam03939  15 GVHSHKKKKIRTSVTFHRPKTLRLARQPKYPRKSVP 50
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
80-145 2.00e-17

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 72.02  E-value: 2.00e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17105394  80 PLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-------------DGEKKAYVRLAPDYD 145
Cdd:COG0089   3 PVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkkkrfgrrvgkrSDWKKAIVTLAEGQK 81
rplW PRK12280
50S ribosomal protein L23; Reviewed
71-145 4.94e-09

50S ribosomal protein L23; Reviewed


Pssm-ID: 237035 [Multi-domain]  Cd Length: 158  Bit Score: 52.07  E-value: 4.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17105394   71 LDHYAIIKFPLTTESAMKKIEDNnTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-------------DGEKKAY 137
Cdd:PRK12280   1 MNINEVIKKPILTEKSYSLMSKN-VYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDkkpkrlgrfpgftNSYKKAY 79

                 ....*...
gi 17105394  138 VRLAPDYD 145
Cdd:PRK12280  80 VTLAEGYS 87
rpl23 CHL00030
ribosomal protein L23
76-130 8.06e-07

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 44.91  E-value: 8.06e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 17105394   76 IIKFPLTTESAMKKIEdNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP 130
Cdd:CHL00030   3 GIKYPVFTDKSIRLLE-KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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