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Conserved domains on  [gi|4506631|ref|NP_000980|]
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large ribosomal subunit protein eL30 [Homo sapiens]

Protein Classification

60S ribosomal protein L30( domain architecture ID 10015210)

60S ribosomal protein L30 may participate in a key bridging interaction between the large and small ribosomal subunits

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00106 PTZ00106
60S ribosomal protein L30; Provisional
2-107 1.67e-68

60S ribosomal protein L30; Provisional


:

Pssm-ID: 185450  Cd Length: 108  Bit Score: 200.69  E-value: 1.67e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631     2 VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIEL 81
Cdd:PTZ00106   1 MMKKKKKKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDL 80
                         90       100
                 ....*....|....*....|....*.
gi 4506631    82 GTACGKYYRVCTLAIIDPGDSDIIRS 107
Cdd:PTZ00106  81 GTACGRHFRVSVMSITDAGDSDILRA 106
 
Name Accession Description Interval E-value
PTZ00106 PTZ00106
60S ribosomal protein L30; Provisional
2-107 1.67e-68

60S ribosomal protein L30; Provisional


Pssm-ID: 185450  Cd Length: 108  Bit Score: 200.69  E-value: 1.67e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631     2 VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIEL 81
Cdd:PTZ00106   1 MMKKKKKKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDL 80
                         90       100
                 ....*....|....*....|....*.
gi 4506631    82 GTACGKYYRVCTLAIIDPGDSDIIRS 107
Cdd:PTZ00106  81 GTACGRHFRVSVMSITDAGDSDILRA 106
RPL30E COG1911
Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
13-105 3.06e-36

Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441515 [Multi-domain]  Cd Length: 97  Bit Score: 118.77  E-value: 3.06e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVC 92
Cdd:COG1911   3 DIEKALRDAVKTGKVVLGSKQTIKAIKLGKAKLVILAANCPPEIREDIEYYAKLSNVPVYVYPGTSVELGALCGKPFRVS 82
                        90
                ....*....|...
gi 4506631   93 TLAIIDPGDSDII 105
Cdd:COG1911  83 ALAIIDPGESDIL 95
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
12-105 2.03e-26

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 93.81  E-value: 2.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631     12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNC-PALRKSEIEYYAMlaKTGVHHYSGNN-IELGTACGKYY 89
Cdd:pfam01248   1 DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCdPEEKVKLIPALCK--EKNVPYVKVPSkKELGEACGKKR 78
                          90
                  ....*....|....*.
gi 4506631     90 RVCTLAIIDPGDSDII 105
Cdd:pfam01248  79 PVSALAIKDEGDSKIL 94
 
Name Accession Description Interval E-value
PTZ00106 PTZ00106
60S ribosomal protein L30; Provisional
2-107 1.67e-68

60S ribosomal protein L30; Provisional


Pssm-ID: 185450  Cd Length: 108  Bit Score: 200.69  E-value: 1.67e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631     2 VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIEL 81
Cdd:PTZ00106   1 MMKKKKKKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDL 80
                         90       100
                 ....*....|....*....|....*.
gi 4506631    82 GTACGKYYRVCTLAIIDPGDSDIIRS 107
Cdd:PTZ00106  81 GTACGRHFRVSVMSITDAGDSDILRA 106
RPL30E COG1911
Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
13-105 3.06e-36

Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441515 [Multi-domain]  Cd Length: 97  Bit Score: 118.77  E-value: 3.06e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVC 92
Cdd:COG1911   3 DIEKALRDAVKTGKVVLGSKQTIKAIKLGKAKLVILAANCPPEIREDIEYYAKLSNVPVYVYPGTSVELGALCGKPFRVS 82
                        90
                ....*....|...
gi 4506631   93 TLAIIDPGDSDII 105
Cdd:COG1911  83 ALAIIDPGESDIL 95
PRK01018 PRK01018
50S ribosomal protein L30e; Reviewed
13-105 1.26e-33

50S ribosomal protein L30e; Reviewed


Pssm-ID: 179205 [Multi-domain]  Cd Length: 99  Bit Score: 112.37  E-value: 1.26e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631    13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVC 92
Cdd:PRK01018   3 DFNRELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTVS 82
                         90
                 ....*....|...
gi 4506631    93 TLAIIDPGDSDII 105
Cdd:PRK01018  83 ALAIVDPGESDIL 95
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
12-105 2.03e-26

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 93.81  E-value: 2.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631     12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNC-PALRKSEIEYYAMlaKTGVHHYSGNN-IELGTACGKYY 89
Cdd:pfam01248   1 DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCdPEEKVKLIPALCK--EKNVPYVKVPSkKELGEACGKKR 78
                          90
                  ....*....|....*.
gi 4506631     90 RVCTLAIIDPGDSDII 105
Cdd:pfam01248  79 PVSALAIKDEGDSKIL 94
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
18-108 3.77e-12

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 57.47  E-value: 3.77e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631   18 LQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNC------PALRKSE---IEYYAMLAKTgvhhysgnniELGTACGKY 88
Cdd:COG1358   7 LGLARRAGKLVSGEEQVLKAIRKGKAKLVIIAEDAsentkkKLLDLCEeygVPVVEVGTKE----------ELGKAIGKV 76
                        90       100
                ....*....|....*....|
gi 4506631   89 YRVCtLAIIDPGDSDIIRSM 108
Cdd:COG1358  77 GRAV-VAITDEGFAKKLLEL 95
PRK07283 PRK07283
YlxQ-related RNA-binding protein;
11-108 1.99e-05

YlxQ-related RNA-binding protein;


Pssm-ID: 180920  Cd Length: 98  Bit Score: 40.19  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631    11 LESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNC-PALRK---SEIEYYAMLAKTGVhhysgNNIELGTACG 86
Cdd:PRK07283   3 KQKISNLLGLAQRAGRIISGEELVVKAIQSGQAKLVFLANDAgPNLTKkvtDKSNYYQVEVSTVF-----STLELSAAVG 77
                         90       100
                 ....*....|....*....|..
gi 4506631    87 KYYRVctLAIIDPGDSDIIRSM 108
Cdd:PRK07283  78 KPRKV--LAVTDAGFSKKMRSL 97
PRK07714 PRK07714
YlxQ family RNA-binding protein;
16-108 3.71e-05

YlxQ family RNA-binding protein;


Pssm-ID: 236077  Cd Length: 100  Bit Score: 39.38  E-value: 3.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506631    16 SRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIE----YYAMLAKtgvhhYSGNNIELGTACGKYYRV 91
Cdd:PRK07714   8 SFLGLANRARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITdkctYYNVPMR-----KVENRQQLGHAIGKDERV 82
                         90
                 ....*....|....*..
gi 4506631    92 cTLAIIDPGDSDIIRSM 108
Cdd:PRK07714  83 -VVAVLDEGFAKKLRSM 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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