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Conserved domains on  [gi|4506629|ref|NP_000983|]
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large ribosomal subunit protein eL29 [Homo sapiens]

Protein Classification

eL29 family ribosomal protein( domain architecture ID 10484832)

eL29 family ribosomal protein is a component of the large ribosomal subunit which is also involved in a variety of cellular processes, such as cell-to-cell communication, adhesion, differentiation, proliferation and blood coagulation modulation.

Gene Ontology:  GO:0003735|GO:0002181
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 2.86e-22

Ribosomal L29e protein family;


:

Pssm-ID: 460324  Cd Length: 39  Bit Score: 83.38  E-value: 2.86e-22
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 4506629      4 SKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRN 42
Cdd:pfam01779   1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
 
Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 2.86e-22

Ribosomal L29e protein family;


Pssm-ID: 460324  Cd Length: 39  Bit Score: 83.38  E-value: 2.86e-22
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 4506629      4 SKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRN 42
Cdd:pfam01779   1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
PTZ00190 PTZ00190
60S ribosomal protein L29; Provisional
 1-24 2.12e-04

60S ribosomal protein L29; Provisional


Pssm-ID: 140217  Cd Length: 70  Bit Score: 37.73  E-value: 2.12e-04
                         10        20
                 ....*....|....*....|....
gi 4506629     1 MAKSKNHTTHNQSRKWHRNGIKKP 24
Cdd:PTZ00190   1 MAKSKNHTNHNQSSKNHRNGIKGP 24
 
Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 2.86e-22

Ribosomal L29e protein family;


Pssm-ID: 460324  Cd Length: 39  Bit Score: 83.38  E-value: 2.86e-22
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 4506629      4 SKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRN 42
Cdd:pfam01779   1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
PTZ00190 PTZ00190
60S ribosomal protein L29; Provisional
 1-24 2.12e-04

60S ribosomal protein L29; Provisional


Pssm-ID: 140217  Cd Length: 70  Bit Score: 37.73  E-value: 2.12e-04
                         10        20
                 ....*....|....*....|....
gi 4506629     1 MAKSKNHTTHNQSRKWHRNGIKKP 24
Cdd:PTZ00190   1 MAKSKNHTNHNQSSKNHRNGIKGP 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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