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myomegalin isoform 2 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
Cnn_1N
pfam07989 Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated ...
6-73
3.70e-14
Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated proteins in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been identified in association with spindle pole body and non-spindle pole body microtubules. The pericentrin homolog Pcp1 is also associated with the fungal centrosome or spindle pole body (SPB). Members of this family have been named centrosomins, and are an essential mitotic centrosome component required for assembly of all other known pericentriolar matrix proteins in order to achieve microtubule-organizing activity in fission yeast. Cnn_1N is a short conserved motif towards the N-terminus. Motif 1 is found to be necessary for proper recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate transforming acidic coiled-coil proteins [TACC]), and Minispindles (Msps) to embryonic centrosomes but is not required for assembly of other centrosome components including Aurora A kinase and CP60 in Drosophila.
Pssm-ID: 462333 [Multi-domain]
Cd Length: 69
Bit Score: 67.93
E-value: 3.70e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525313646 6 R TLSQHLND LKKENF S LKL R I Y FLEER MQQKYEASR E DIY K R NIELKVE V E S L K REL QDK K QH L DKTW 73
Cdd:pfam07989 1 R EQEKQIDK LKKENF N LKL K I H FLEER LEKLAPEQI E EAL K E NIELKVE L E T L Q REL KKL K KL L REAE 68
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
31-679
3.97e-12
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 70.47
E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 31 E RMQQKYEASREDIYKRNI ELK V E V ESL KR EL QDKKQH L DKTWADV E N L NS Q N E AELRRQFEERQ Q ETEHVY E LLENKIQ 110
Cdd:TIGR02168 329 E SKLDELAEELAELEEKLE ELK E E L ESL EA EL EELEAE L EELESRL E E L EE Q L E TLRSKVAQLEL Q IASLNN E IERLEAR 408
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 111 L LQE E S R LAKNEAARMAA L VEA E KECNL EL SEK L KGVTKNW E DV pgdqvkpdqy T E A L AQRDKRI EEL NQS L AAQ E RLVE 190
Cdd:TIGR02168 409 L ERL E D R RERLQQEIEEL L KKL E EAELK EL QAE L EELEEEL E EL ---------- Q E E L ERLEEAL EEL REE L EEA E QALD 478
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 191 QLS RE KQ QL LHL L EEPTSMEVQPMTE - E LL K QQKL N SHETTITQQSV S D sh L AELQ E KIQQ te A TNKI L QEK L N emsyel 269
Cdd:TIGR02168 479 AAE RE LA QL QAR L DSLERLQENLEGF s E GV K ALLK N QSGLSGILGVL S E -- L ISVD E GYEA -- A IEAA L GGR L Q ------ 548
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 270 KCAQ E SSQKQDGT I QN LK E tl KSRE R E T EELYQV I E G QNDTMAKLREMLHQSQLGQLHSSEGTSPAQQQV AL LD L QSALF 349
Cdd:TIGR02168 549 AVVV E NLNAAKKA I AF LK Q -- NELG R V T FLPLDS I K G TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK AL SY L LGGVL 626
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 350 CSQ ----- LE IQ K LQ R ---------------------------- VVRQKE R QLADAKQCVQFV E AAAH E S E QQKEASW K H 396
Cdd:TIGR02168 627 VVD dldna LE LA K KL R pgyrivtldgdlvrpggvitggsaktns SILERR R EIEELEEKIEEL E EKIA E L E KALAELR K E 706
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 397 NQ EL RKA L Q QL QE EL QNK S Q Q LR A WEAEKYNEIRTQ EQ NIQHLNHSLSHKEQ L LQ E FR EL LQYRDNSDKT L EAN E MLL E K 476
Cdd:TIGR02168 707 LE EL EEE L E QL RK EL EEL S R Q IS A LRKDLARLEAEV EQ LEERIAQLSKELTE L EA E IE EL EERLEEAEEE L AEA E AEI E E 786
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 477 L RQR I HD kava L ERAIDEKFS AL E E KEK EL RQ L RLAVRERDHD LE R L RDVLSSN E ATMQSM E SLLRAKGLEV E Q L STTCQ 556
Cdd:TIGR02168 787 L EAQ I EQ ---- L KEELKALRE AL D E LRA EL TL L NEEAANLRER LE S L ERRIAAT E RRLEDL E EQIEELSEDI E S L AAEIE 862
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 557 N L QW L K EE M E TKFSRWQK E QE S IIQQ lqts L HDRNK E V E D LS AT L lcklgpgqs EIA E ELCQR L Q R KERM L QDL L SDRNK 636
Cdd:TIGR02168 863 E L EE L I EE L E SELEALLN E RA S LEEA ---- L ALLRS E L E E LS EE L --------- REL E SKRSE L R R ELEE L REK L AQLEL 929
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 525313646 637 QVLEH E ME I QG L LQSV S TREQESQAA AE K L VQALMERNS E LQA 679
Cdd:TIGR02168 930 RLEGL E VR I DN L QERL S EEYSLTLEE AE A L ENKIEDDEE E ARR 972
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
751-969
3.76e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.08
E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 751 LE K EL SNAKE EL ELMAKKER E SQM EL SA L QSMMAVQEE E LQVQA A DMES L TRN I QIK E DLIKD L QMQ L V dp E DIPAMER L 830
Cdd:COG1196 251 LE A EL EELEA EL AELEAELE E LRL EL EE L ELELEEAQA E EYELL A ELAR L EQD I ARL E ERRRE L EER L E -- E LEEELAE L 328
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 831 TQ E VLL L R E KVASV E SQGQ E IS g NRRQQLLLM L EGLVDERSRLNEA L QAERQLYSS L V kfhahpess E RDRTLQVELEGA 910
Cdd:COG1196 329 EE E LEE L E E ELEEL E EELE E AE - EELEEAEAE L AEAEEALLEAEAE L AEAEEELEE L A --------- E ELLEALRAAAEL 398
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 525313646 911 QVLRSR LEE VLGRS LERL N RLE TLAAIGGA A AGDDT E DTST E FTDSI E EEAAHHSHQQL 969
Cdd:COG1196 399 AAQLEE LEE AEEAL LERL E RLE EELEELEE A LAELE E EEEE E EEALE E AAEEEAELEEE 457
Name
Accession
Description
Interval
E-value
Cnn_1N
pfam07989 Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated ...
6-73
3.70e-14
Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated proteins in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been identified in association with spindle pole body and non-spindle pole body microtubules. The pericentrin homolog Pcp1 is also associated with the fungal centrosome or spindle pole body (SPB). Members of this family have been named centrosomins, and are an essential mitotic centrosome component required for assembly of all other known pericentriolar matrix proteins in order to achieve microtubule-organizing activity in fission yeast. Cnn_1N is a short conserved motif towards the N-terminus. Motif 1 is found to be necessary for proper recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate transforming acidic coiled-coil proteins [TACC]), and Minispindles (Msps) to embryonic centrosomes but is not required for assembly of other centrosome components including Aurora A kinase and CP60 in Drosophila.
Pssm-ID: 462333 [Multi-domain]
Cd Length: 69
Bit Score: 67.93
E-value: 3.70e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525313646 6 R TLSQHLND LKKENF S LKL R I Y FLEER MQQKYEASR E DIY K R NIELKVE V E S L K REL QDK K QH L DKTW 73
Cdd:pfam07989 1 R EQEKQIDK LKKENF N LKL K I H FLEER LEKLAPEQI E EAL K E NIELKVE L E T L Q REL KKL K KL L REAE 68
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
31-679
3.97e-12
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 70.47
E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 31 E RMQQKYEASREDIYKRNI ELK V E V ESL KR EL QDKKQH L DKTWADV E N L NS Q N E AELRRQFEERQ Q ETEHVY E LLENKIQ 110
Cdd:TIGR02168 329 E SKLDELAEELAELEEKLE ELK E E L ESL EA EL EELEAE L EELESRL E E L EE Q L E TLRSKVAQLEL Q IASLNN E IERLEAR 408
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 111 L LQE E S R LAKNEAARMAA L VEA E KECNL EL SEK L KGVTKNW E DV pgdqvkpdqy T E A L AQRDKRI EEL NQS L AAQ E RLVE 190
Cdd:TIGR02168 409 L ERL E D R RERLQQEIEEL L KKL E EAELK EL QAE L EELEEEL E EL ---------- Q E E L ERLEEAL EEL REE L EEA E QALD 478
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 191 QLS RE KQ QL LHL L EEPTSMEVQPMTE - E LL K QQKL N SHETTITQQSV S D sh L AELQ E KIQQ te A TNKI L QEK L N emsyel 269
Cdd:TIGR02168 479 AAE RE LA QL QAR L DSLERLQENLEGF s E GV K ALLK N QSGLSGILGVL S E -- L ISVD E GYEA -- A IEAA L GGR L Q ------ 548
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 270 KCAQ E SSQKQDGT I QN LK E tl KSRE R E T EELYQV I E G QNDTMAKLREMLHQSQLGQLHSSEGTSPAQQQV AL LD L QSALF 349
Cdd:TIGR02168 549 AVVV E NLNAAKKA I AF LK Q -- NELG R V T FLPLDS I K G TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK AL SY L LGGVL 626
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 350 CSQ ----- LE IQ K LQ R ---------------------------- VVRQKE R QLADAKQCVQFV E AAAH E S E QQKEASW K H 396
Cdd:TIGR02168 627 VVD dldna LE LA K KL R pgyrivtldgdlvrpggvitggsaktns SILERR R EIEELEEKIEEL E EKIA E L E KALAELR K E 706
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 397 NQ EL RKA L Q QL QE EL QNK S Q Q LR A WEAEKYNEIRTQ EQ NIQHLNHSLSHKEQ L LQ E FR EL LQYRDNSDKT L EAN E MLL E K 476
Cdd:TIGR02168 707 LE EL EEE L E QL RK EL EEL S R Q IS A LRKDLARLEAEV EQ LEERIAQLSKELTE L EA E IE EL EERLEEAEEE L AEA E AEI E E 786
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 477 L RQR I HD kava L ERAIDEKFS AL E E KEK EL RQ L RLAVRERDHD LE R L RDVLSSN E ATMQSM E SLLRAKGLEV E Q L STTCQ 556
Cdd:TIGR02168 787 L EAQ I EQ ---- L KEELKALRE AL D E LRA EL TL L NEEAANLRER LE S L ERRIAAT E RRLEDL E EQIEELSEDI E S L AAEIE 862
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 557 N L QW L K EE M E TKFSRWQK E QE S IIQQ lqts L HDRNK E V E D LS AT L lcklgpgqs EIA E ELCQR L Q R KERM L QDL L SDRNK 636
Cdd:TIGR02168 863 E L EE L I EE L E SELEALLN E RA S LEEA ---- L ALLRS E L E E LS EE L --------- REL E SKRSE L R R ELEE L REK L AQLEL 929
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 525313646 637 QVLEH E ME I QG L LQSV S TREQESQAA AE K L VQALMERNS E LQA 679
Cdd:TIGR02168 930 RLEGL E VR I DN L QERL S EEYSLTLEE AE A L ENKIEDDEE E ARR 972
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
5-587
9.61e-12
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 69.20
E-value: 9.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 5 YR T L SQH L ND L KK E NFS LKLR IYFL E ERMQQK ---- Y EA SR E DIYKRNI EL KV E V E S L KR EL QDKKQH L DKTW A DVEN L N 80
Cdd:COG1196 215 YR E L KEE L KE L EA E LLL LKLR ELEA E LEELEA elee L EA EL E ELEAELA EL EA E L E E L RL EL EELELE L EEAQ A EEYE L L 294
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 81 S --- QN E AELR R QF E E R QQET E HVY EL L E NKIQ L LQ E ESR L AKNEAARMAA L V EAE K E c NL E LSEK L KGVTK nwedvpgd 157
Cdd:COG1196 295 A ela RL E QDIA R LE E R R RELE E RLE EL E E ELAE L EE E LEE L EEELEELEEE L E EAE E E - LE E AEAE L AEAEE -------- 365
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 158 qvkpd QYT EA L A QRDKRI EEL NQSLAAQERLVEQLSREKQ QL LH L L E EPTSME vqpm TEELLKQQK L NSH E TTITQQSVS 237
Cdd:COG1196 366 ----- ALL EA E A ELAEAE EEL EELAEELLEALRAAAELAA QL EE L E E AEEALL ---- ERLERLEEE L EEL E EALAELEEE 436
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 238 DSHLA E LQ E KIQQT EA TNKILQ E K L N E MSY EL KCAQESSQKQDGTIQNLKETLKS R ERETE E LYQVI EG QNDTMAKLREM 317
Cdd:COG1196 437 EEEEE E AL E EAAEE EA ELEEEE E A L L E LLA EL LEEAALLEAALAELLEELAEAAA R LLLLL E AEADY EG FLEGVKAALLL 516
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 318 LHQSQ L GQLHSSEGTSP A QQQV AL LDLQS A L f CSQLEIQKLQRVVRQK E RQL A DAKQCVQ F VEAAAHESEQQKE A SWKHN 397
Cdd:COG1196 517 AGLRG L AGAVAVLIGVE A AYEA AL EAALA A A - LQNIVVEDDEVAAAAI E YLK A AKAGRAT F LPLDKIRARAALA A ALARG 595
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 398 QELR k A LQQLQEE L QNKSQQLRAWEAEKYNEIRTQEQNIQH L NHSLSHKEQ L LQEFR E LLQYRDNSDK T LEANEM LL EK L 477
Cdd:COG1196 596 AIGA - A VDLVASD L READARYYVLGDTLLGRTLVAARLEAA L RRAVTLAGR L REVTL E GEGGSAGGSL T GGSRRE LL AA L 674
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 478 RQRIHDKAVAL ER AID E KFSAL E EKEK E LRQL R LAVRERDHD LE RLRDVLSSN E ATMQSM E S LL RAKGL E V E Q L STT cqn 557
Cdd:COG1196 675 LEAEAELEELA ER LAE E ELELE E ALLA E EEEE R ELAEAEEER LE EELEEEALE E QLEAER E E LL EELLE E E E L L EEE --- 751
570 580 590
....*....|....*....|....*....|
gi 525313646 558 lqw LK EE METKFSR wq K E Q E SIIQQ L QTSL 587
Cdd:COG1196 752 --- AL EE LPEPPDL -- E E L E RELER L EREI 776
PTZ00121
PTZ00121 MAEBL; Provisional
30-516
2.38e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.60
E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 30 E ERMQQKYEASR E DIY K RNIEL K VEV E SL K RELQDK K QHLDKTWADV E NLNSQN EA ELRRQF E ERQQETEHVYELL E - N K 108
Cdd:PTZ00121 1313 E AKKADEAKKKA E EAK K KADAA K KKA E EA K KAAEAA K AEAEAAADEA E AAEEKA EA AEKKKE E AKKKADAAKKKAE E k K K 1392
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 109 IQLLQEESRLA K NE A ARMAALVE A E K ECN l E LSE K LKGVT K NW E - DVPGDQV K PDQYTEAL A QRD K RI EE LNQS l A AQER 187
Cdd:PTZ00121 1393 ADEAKKKAEED K KK A DELKKAAA A K K KAD - E AKK K AEEKK K AD E a KKKAEEA K KADEAKKK A EEA K KA EE AKKK - A EEAK 1470
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 188 LVEQLSREKQQLLHLL E - EPTSM E VQPMTE E LL K -- QQ K LNSH E TTITQQSVSDSHLAELQ E KIQQT EA TNKILQE K LN E 264
Cdd:PTZ00121 1471 KADEAKKKAEEAKKAD E a KKKAE E AKKKAD E AK K aa EA K KKAD E AKKAEEAKKADEAKKAE E AKKAD EA KKAEEKK K AD E 1550
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 265 M -- SY ELK C A Q E SSQKQDG ti QNLK E TLKSRE R ET EE LYQVI E GQNDTMA KL R E MLHQSQLGQLHSS E GTSPAQQQVALL 342
Cdd:PTZ00121 1551 L kk AE ELK K A E E KKKAEEA -- KKAE E DKNMAL R KA EE AKKAE E ARIEEVM KL Y E EEKKMKAEEAKKA E EAKIKAEELKKA 1628
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 343 D l QSALFCS QL EIQKLQRVVRQK E RQL A DAKQCVQFV E A A AHES E QQ K E A -- SW K HNQELR KA LQQ L -- QE E LQN K SQQ L 418
Cdd:PTZ00121 1629 E - EEKKKVE QL KKKEAEEKKKAE E LKK A EEENKIKAA E E A KKAE E DK K K A ee AK K AEEDEK KA AEA L kk EA E EAK K AEE L 1707
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 419 RAW EAE kyn E IRTQ E QNIQHLNHSLSHK E QLLQ E FR E llqy RDNSDKTLEAN E MLLE K LRQRIHDKAVAL E RAID EK FSA 498
Cdd:PTZ00121 1708 KKK EAE --- E KKKA E ELKKAEEENKIKA E EAKK E AE E ---- DKKKAEEAKKD E EEKK K IAHLKKEEEKKA E EIRK EK EAV 1780
490
....*....|....*...
gi 525313646 499 L EE KEK E LRQL R LAVRER 516
Cdd:PTZ00121 1781 I EE ELD E EDEK R RMEVDK 1798
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
33-838
1.83e-04
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 45.49
E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 33 M Q QKYEA S R E DIY K RNIE L KVE V ES L KRE LQ DKKQHL D KT w AD VENLN SQ NEAE LR R Q FEERQQ E T E HVYE L L E NKI --- 109
Cdd:pfam15921 90 L Q RRLNE S N E LHE K QKFY L RQS V ID L QTK LQ EMQMER D AM - AD IRRRE SQ SQED LR N Q LQNTVH E L E AAKC L K E DML eds 168
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 110 -- Q LL Q EESRLAKN E AARM --- AA LV EA E KECNLELS E KLKGV T KNWEDV p G DQV kpdqy TEA L AQR D KR I EE L NQSLAA 184
Cdd:pfam15921 169 nt Q IE Q LRKMMLSH E GVLQ eir SI LV DF E EASGKKIY E HDSMS T MHFRSL - G SAI ----- SKI L REL D TE I SY L KGRIFP 242
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 185 Q E RLV E Q L SR E K Q QLL hlleeptsmevqpmte ELL K QQ KLNSH E TT I TQQS V sds HLAE L Q EK IQQTEATNKIL Q EK L NE 264
Cdd:pfam15921 243 V E DQL E A L KS E S Q NKI ---------------- ELL L QQ HQDRI E QL I SEHE V --- EITG L T EK ASSARSQANSI Q SQ L EI 303
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 265 MSYELKCAQESSQK Q DGTIQNLKET L K S RE RE TEEL Y Q viegqndtm A K LR E MLH Q SQ L GQLHSS E GTSPAQ Q qval LDL 344
Cdd:pfam15921 304 IQEQARNQNSMYMR Q LSDLESTVSQ L R S EL RE AKRM Y E --------- D K IE E LEK Q LV L ANSELT E ARTERD Q ---- FSQ 370
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 345 Q S ALFCS QL ei QKL QRVVRQK E RQ L ADA K Q cvqfveaaaheseq Q KEAS W KHN ------- QE LR KA L QQLQE E L Q NKSQQ 417
Cdd:pfam15921 371 E S GNLDD QL -- QKL LADLHKR E KE L SLE K E -------------- Q NKRL W DRD tgnsiti DH LR RE L DDRNM E V Q RLEAL 434
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 418 L R A WEA E KYNEIRT Q EQN IQ HL N H SL SHKEQ L LQEFRELLQYRDNSDKT L E A NE M L LE KLRQRIH D KAVA L E raid EK FS 497
Cdd:pfam15921 435 L K A MKS E CQGQMER Q MAA IQ GK N E SL EKVSS L TAQLESTKEMLRKVVEE L T A KK M T LE SSERTVS D LTAS L Q ---- EK ER 510
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 498 A L E EKEK E LRQ LR LA V RERDHD L ER L R --- D V L SSNEATMQSMESLLRA K GLEV E Q L STTCQ N LQW L KEEMETKFSRW Q K 574
Cdd:pfam15921 511 A I E ATNA E ITK LR SR V DLKLQE L QH L K neg D H L RNVQTECEALKLQMAE K DKVI E I L RQQIE N MTQ L VGQHGRTAGAM Q V 590
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 575 E Q esii Q QL QTSLH DR NK E VEDLS at L L CKLGPGQSEIA E ELCQR L QRKERM L QDLL S D R NKQ V LEHEM E IQG LL QS V S T 654
Cdd:pfam15921 591 E K ---- A QL EKEIN DR RL E LQEFK -- I L KDKKDAKIREL E ARVSD L ELEKVK L VNAG S E R LRA V KDIKQ E RDQ LL NE V K T 664
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 655 REQ E SQAAA E KL vq ALME RN SELQALRQYLGGRDSL M SQAPISNQQAEVTP T GRLGKQT D QGS M QI psrddst SLTAKED 734
Cdd:pfam15921 665 SRN E LNSLS E DY -- EVLK RN FRNKSEEMETTTNKLK M QLKSAQSELEQTRN T LKSMEGS D GHA M KV ------- AMGMQKQ 735
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 735 VSIP R STLGD L DT - VAG LE KELS NA KE E LELMAKKERESQM ELS ALQSMMAVQEE EL Q V QAADMES L TRNIQIK E DLIKD 813
Cdd:pfam15921 736 ITAK R GQIDA L QS k IQF LE EAMT NA NK E KHFLKEEKNKLSQ ELS TVATEKNKMAG EL E V LRSQERR L KEKVANM E VALDK 815
810 820
....*....|....*....|....*
gi 525313646 814 LQM Q LVDPE DI pa ME R LT QE VLL L R 838
Cdd:pfam15921 816 ASL Q FAECQ DI -- IQ R QE QE SVR L K 838
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
751-969
3.76e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.08
E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 751 LE K EL SNAKE EL ELMAKKER E SQM EL SA L QSMMAVQEE E LQVQA A DMES L TRN I QIK E DLIKD L QMQ L V dp E DIPAMER L 830
Cdd:COG1196 251 LE A EL EELEA EL AELEAELE E LRL EL EE L ELELEEAQA E EYELL A ELAR L EQD I ARL E ERRRE L EER L E -- E LEEELAE L 328
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 831 TQ E VLL L R E KVASV E SQGQ E IS g NRRQQLLLM L EGLVDERSRLNEA L QAERQLYSS L V kfhahpess E RDRTLQVELEGA 910
Cdd:COG1196 329 EE E LEE L E E ELEEL E EELE E AE - EELEEAEAE L AEAEEALLEAEAE L AEAEEELEE L A --------- E ELLEALRAAAEL 398
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 525313646 911 QVLRSR LEE VLGRS LERL N RLE TLAAIGGA A AGDDT E DTST E FTDSI E EEAAHHSHQQL 969
Cdd:COG1196 399 AAQLEE LEE AEEAL LERL E RLE EELEELEE A LAELE E EEEE E EEALE E AAEEEAELEEE 457
Name
Accession
Description
Interval
E-value
Cnn_1N
pfam07989 Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated ...
6-73
3.70e-14
Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated proteins in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been identified in association with spindle pole body and non-spindle pole body microtubules. The pericentrin homolog Pcp1 is also associated with the fungal centrosome or spindle pole body (SPB). Members of this family have been named centrosomins, and are an essential mitotic centrosome component required for assembly of all other known pericentriolar matrix proteins in order to achieve microtubule-organizing activity in fission yeast. Cnn_1N is a short conserved motif towards the N-terminus. Motif 1 is found to be necessary for proper recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate transforming acidic coiled-coil proteins [TACC]), and Minispindles (Msps) to embryonic centrosomes but is not required for assembly of other centrosome components including Aurora A kinase and CP60 in Drosophila.
Pssm-ID: 462333 [Multi-domain]
Cd Length: 69
Bit Score: 67.93
E-value: 3.70e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525313646 6 R TLSQHLND LKKENF S LKL R I Y FLEER MQQKYEASR E DIY K R NIELKVE V E S L K REL QDK K QH L DKTW 73
Cdd:pfam07989 1 R EQEKQIDK LKKENF N LKL K I H FLEER LEKLAPEQI E EAL K E NIELKVE L E T L Q REL KKL K KL L REAE 68
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
31-679
3.97e-12
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 70.47
E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 31 E RMQQKYEASREDIYKRNI ELK V E V ESL KR EL QDKKQH L DKTWADV E N L NS Q N E AELRRQFEERQ Q ETEHVY E LLENKIQ 110
Cdd:TIGR02168 329 E SKLDELAEELAELEEKLE ELK E E L ESL EA EL EELEAE L EELESRL E E L EE Q L E TLRSKVAQLEL Q IASLNN E IERLEAR 408
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 111 L LQE E S R LAKNEAARMAA L VEA E KECNL EL SEK L KGVTKNW E DV pgdqvkpdqy T E A L AQRDKRI EEL NQS L AAQ E RLVE 190
Cdd:TIGR02168 409 L ERL E D R RERLQQEIEEL L KKL E EAELK EL QAE L EELEEEL E EL ---------- Q E E L ERLEEAL EEL REE L EEA E QALD 478
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 191 QLS RE KQ QL LHL L EEPTSMEVQPMTE - E LL K QQKL N SHETTITQQSV S D sh L AELQ E KIQQ te A TNKI L QEK L N emsyel 269
Cdd:TIGR02168 479 AAE RE LA QL QAR L DSLERLQENLEGF s E GV K ALLK N QSGLSGILGVL S E -- L ISVD E GYEA -- A IEAA L GGR L Q ------ 548
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 270 KCAQ E SSQKQDGT I QN LK E tl KSRE R E T EELYQV I E G QNDTMAKLREMLHQSQLGQLHSSEGTSPAQQQV AL LD L QSALF 349
Cdd:TIGR02168 549 AVVV E NLNAAKKA I AF LK Q -- NELG R V T FLPLDS I K G TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK AL SY L LGGVL 626
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 350 CSQ ----- LE IQ K LQ R ---------------------------- VVRQKE R QLADAKQCVQFV E AAAH E S E QQKEASW K H 396
Cdd:TIGR02168 627 VVD dldna LE LA K KL R pgyrivtldgdlvrpggvitggsaktns SILERR R EIEELEEKIEEL E EKIA E L E KALAELR K E 706
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 397 NQ EL RKA L Q QL QE EL QNK S Q Q LR A WEAEKYNEIRTQ EQ NIQHLNHSLSHKEQ L LQ E FR EL LQYRDNSDKT L EAN E MLL E K 476
Cdd:TIGR02168 707 LE EL EEE L E QL RK EL EEL S R Q IS A LRKDLARLEAEV EQ LEERIAQLSKELTE L EA E IE EL EERLEEAEEE L AEA E AEI E E 786
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 477 L RQR I HD kava L ERAIDEKFS AL E E KEK EL RQ L RLAVRERDHD LE R L RDVLSSN E ATMQSM E SLLRAKGLEV E Q L STTCQ 556
Cdd:TIGR02168 787 L EAQ I EQ ---- L KEELKALRE AL D E LRA EL TL L NEEAANLRER LE S L ERRIAAT E RRLEDL E EQIEELSEDI E S L AAEIE 862
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 557 N L QW L K EE M E TKFSRWQK E QE S IIQQ lqts L HDRNK E V E D LS AT L lcklgpgqs EIA E ELCQR L Q R KERM L QDL L SDRNK 636
Cdd:TIGR02168 863 E L EE L I EE L E SELEALLN E RA S LEEA ---- L ALLRS E L E E LS EE L --------- REL E SKRSE L R R ELEE L REK L AQLEL 929
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 525313646 637 QVLEH E ME I QG L LQSV S TREQESQAA AE K L VQALMERNS E LQA 679
Cdd:TIGR02168 930 RLEGL E VR I DN L QERL S EEYSLTLEE AE A L ENKIEDDEE E ARR 972
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
5-587
9.61e-12
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 69.20
E-value: 9.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 5 YR T L SQH L ND L KK E NFS LKLR IYFL E ERMQQK ---- Y EA SR E DIYKRNI EL KV E V E S L KR EL QDKKQH L DKTW A DVEN L N 80
Cdd:COG1196 215 YR E L KEE L KE L EA E LLL LKLR ELEA E LEELEA elee L EA EL E ELEAELA EL EA E L E E L RL EL EELELE L EEAQ A EEYE L L 294
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 81 S --- QN E AELR R QF E E R QQET E HVY EL L E NKIQ L LQ E ESR L AKNEAARMAA L V EAE K E c NL E LSEK L KGVTK nwedvpgd 157
Cdd:COG1196 295 A ela RL E QDIA R LE E R R RELE E RLE EL E E ELAE L EE E LEE L EEELEELEEE L E EAE E E - LE E AEAE L AEAEE -------- 365
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 158 qvkpd QYT EA L A QRDKRI EEL NQSLAAQERLVEQLSREKQ QL LH L L E EPTSME vqpm TEELLKQQK L NSH E TTITQQSVS 237
Cdd:COG1196 366 ----- ALL EA E A ELAEAE EEL EELAEELLEALRAAAELAA QL EE L E E AEEALL ---- ERLERLEEE L EEL E EALAELEEE 436
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 238 DSHLA E LQ E KIQQT EA TNKILQ E K L N E MSY EL KCAQESSQKQDGTIQNLKETLKS R ERETE E LYQVI EG QNDTMAKLREM 317
Cdd:COG1196 437 EEEEE E AL E EAAEE EA ELEEEE E A L L E LLA EL LEEAALLEAALAELLEELAEAAA R LLLLL E AEADY EG FLEGVKAALLL 516
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 318 LHQSQ L GQLHSSEGTSP A QQQV AL LDLQS A L f CSQLEIQKLQRVVRQK E RQL A DAKQCVQ F VEAAAHESEQQKE A SWKHN 397
Cdd:COG1196 517 AGLRG L AGAVAVLIGVE A AYEA AL EAALA A A - LQNIVVEDDEVAAAAI E YLK A AKAGRAT F LPLDKIRARAALA A ALARG 595
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 398 QELR k A LQQLQEE L QNKSQQLRAWEAEKYNEIRTQEQNIQH L NHSLSHKEQ L LQEFR E LLQYRDNSDK T LEANEM LL EK L 477
Cdd:COG1196 596 AIGA - A VDLVASD L READARYYVLGDTLLGRTLVAARLEAA L RRAVTLAGR L REVTL E GEGGSAGGSL T GGSRRE LL AA L 674
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 478 RQRIHDKAVAL ER AID E KFSAL E EKEK E LRQL R LAVRERDHD LE RLRDVLSSN E ATMQSM E S LL RAKGL E V E Q L STT cqn 557
Cdd:COG1196 675 LEAEAELEELA ER LAE E ELELE E ALLA E EEEE R ELAEAEEER LE EELEEEALE E QLEAER E E LL EELLE E E E L L EEE --- 751
570 580 590
....*....|....*....|....*....|
gi 525313646 558 lqw LK EE METKFSR wq K E Q E SIIQQ L QTSL 587
Cdd:COG1196 752 --- AL EE LPEPPDL -- E E L E RELER L EREI 776
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
352-857
1.85e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 61.88
E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 352 QL E IQK L QRVVRQK E RQ LA DAKQCVQFVEAAAH E S E QQK E ASWKHNQ EL RKA L QQ L QEELQNKSQQL R AW E AEKYNEIRT 431
Cdd:COG1196 245 EA E LEE L EAELEEL E AE LA ELEAELEELRLELE E L E LEL E EAQAEEY EL LAE L AR L EQDIARLEERR R EL E ERLEELEEE 324
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 432 QEQNIQH L NHSLSHK E Q L LQ E FR E LLQYRDNSDKT L EAN E ML L EKLRQRIHDKAVA LE RAID E KFS AL --- E E KEKE L RQ 508
Cdd:COG1196 325 LAELEEE L EELEEEL E E L EE E LE E AEEELEEAEAE L AEA E EA L LEAEAELAEAEEE LE ELAE E LLE AL raa A E LAAQ L EE 404
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 509 L RL A VRERDHD LERL RDV L SSN E ATMQSM E SLLRAKGLEV E QLSTTCQN L QWLK E EMETKFSRWQK E QESIIQQ L QTS L H 588
Cdd:COG1196 405 L EE A EEALLER LERL EEE L EEL E EALAEL E EEEEEEEEAL E EAAEEEAE L EEEE E ALLELLAELLE E AALLEAA L AEL L E 484
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 589 DRNKEVED L SAT L LCK --- L G PGQSEI A EE L CQR L QRKERMLQD L LSDRNKQVLEH E MEIQGL LQ SVSTREQ E SQ AAA EK 665
Cdd:COG1196 485 ELAEAAAR L LLL L EAE ady E G FLEGVK A AL L LAG L RGLAGAVAV L IGVEAAYEAAL E AALAAA LQ NIVVEDD E VA AAA IE 564
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 666 L ------------------ VQ A LMERNSELQ A LRQYLGGRD S LMSQ A PISNQQAEV T PT GR LGKQTDQGSMQIPSRDDST 727
Cdd:COG1196 565 Y lkaakagratflpldkir AR A ALAAALARG A IGAAVDLVA S DLRE A DARYYVLGD T LL GR TLVAARLEAALRRAVTLAG 644
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 728 S L TAKEDVSIPR S TL G D L DTVAGL E KELSNAKE E L EL MAKK ER ESQM EL SALQSMM A VQ EEE LQVQA A - DMESLTRNIQI 806
Cdd:COG1196 645 R L REVTLEGEGG S AG G S L TGGSRR E LLAALLEA E A EL EELA ER LAEE EL ELEEALL A EE EEE RELAE A e EERLEEELEEE 724
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 525313646 807 KEDLIKDLQMQLVDP E DIPAM E R L TQ E V L LLREKVASV E SQGQ E ISGNR R Q 857
Cdd:COG1196 725 ALEEQLEAEREELLE E LLEEE E L L EE E A L EELPEPPDL E ELER E LERLE R E 775
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
399-669
3.50e-08
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 57.77
E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 399 E L R KA L QQ L QE E --------- L QNKSQQLRAW E ae KYN E IRTQ E QNIQHLNHS L SHK E QL L QEFR E LLQYRD nsd K T LE A 469
Cdd:TIGR02169 195 E K R QQ L ER L RR E rekaeryqa L LKEKREYEGY E -- LLK E KEAL E RQKEAIERQ L ASL E EE L EKLT E EISELE --- K R LE E 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 470 N E M LLE K L RQR I H D KAVALERAID EK fsa LE E K E K E LRQ L RLAVR E RDHD LE RL rdvlssn E ATMQSM E SLLRAKGL E V E 549
Cdd:TIGR02169 270 I E Q LLE E L NKK I K D LGEEEQLRVK EK --- IG E L E A E IAS L ERSIA E KERE LE DA ------- E ERLAKL E AEIDKLLA E I E 339
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 550 Q L STTCQNLQWLKEEMETKFSRWQK E Q E SIIQQ L Q t SLHDRNK E VE D LSATLLC KL GPGQS EI A E elcqr L Q R KERM LQ D 629
Cdd:TIGR02169 340 E L EREIEEERKRRDKLTEEYAELKE E L E DLRAE L E - EVDKEFA E TR D ELKDYRE KL EKLKR EI N E ----- L K R ELDR LQ E 413
250 260 270 280
....*....|....*....|....*....|....*....|
gi 525313646 630 L L SDRNKQVLEHEME I Q G LLQSVSTR E Q E SQAA A EKLVQA 669
Cdd:TIGR02169 414 E L QRLSEELADLNAA I A G IEAKINEL E E E KEDK A LEIKKQ 453
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
170-879
5.13e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 56.99
E-value: 5.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 170 QRDKRI EEL NQS L AAQ E RLV E Q L SR E K Q Q L LHL LEE p TSM EV QPMT EE LLKQ QK -------- LNSH E TTITQQSVSDSH L 241
Cdd:TIGR02168 236 ELREEL EEL QEE L KEA E EEL E E L TA E L Q E L EEK LEE - LRL EV SELE EE IEEL QK elyalane ISRL E QQKQILRERLAN L 314
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 242 ---- A EL QEKIQQT E ATNKI L Q E K L N E MSYE L KCAQ E SSQKQDGTIQN L KET L KSR E RET EEL YQVI E GQNDTM A K L REM 317
Cdd:TIGR02168 315 erql E EL EAQLEEL E SKLDE L A E E L A E LEEK L EELK E ELESLEAELEE L EAE L EEL E SRL EEL EEQL E TLRSKV A Q L ELQ 394
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 318 L -- HQSQLGQ L h SSEGTSPAQQQVA L LDLQSA L FCSQL E -- IQK LQ RVVRQK E RQ L ADAKQCVQFV E A A AH E SEQQK E AS 393
Cdd:TIGR02168 395 I as LNNEIER L - EARLERLEDRRER L QQEIEE L LKKLE E ae LKE LQ AELEEL E EE L EELQEELERL E E A LE E LREEL E EA 473
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 394 WKHNQELR ---------- KA L QQ LQE E L QNK S QQLR A WEAEK ynei RTQEQNIQH L NHSL S HK E QLLQEFREL L QY R --- 460
Cdd:TIGR02168 474 EQALDAAE relaqlqarl DS L ER LQE N L EGF S EGVK A LLKNQ ---- SGLSGILGV L SELI S VD E GYEAAIEAA L GG R lqa 549
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 461 --- D N SDKTLE A NEM L LEKLRQ R IHDKAVALERAIDEKFSAL E EKEKELRQ L RL A -- VRER D HD L ERLRDV L SSNEATMQ 535
Cdd:TIGR02168 550 vvv E N LNAAKK A IAF L KQNELG R VTFLPLDSIKGTEIQGNDR E ILKNIEGF L GV A kd LVKF D PK L RKALSY L LGGVLVVD 629
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 536 SMESL L R - AK G L EVEQLST T CQNLQWLKEEME T KF S R wqk EQE S I I QQLQTSLHDRNKEV E D L SATL ------ L CK L GPG 608
Cdd:TIGR02168 630 DLDNA L E l AK K L RPGYRIV T LDGDLVRPGGVI T GG S A --- KTN S S I LERRREIEELEEKI E E L EEKI aeleka L AE L RKE 706
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 609 QS E IA EEL C Q RLQRK E RMLQD l L S DRN K QVLEH E M E IQG L LQSVSTREQ E SQAAAEKLVQALMERNSELQA L RQYLGGRD 688
Cdd:TIGR02168 707 LE E LE EEL E Q LRKEL E ELSRQ - I S ALR K DLARL E A E VEQ L EERIAQLSK E LTELEAEIEELEERLEEAEEE L AEAEAEIE 785
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 689 S L MS Q AP ------------ ISNQQ AE V T PTGRLGKQTDQGSMQIPS R DDS T SLTAKEDVSIPRSTLG D L dtv AG L EK E LS 756
Cdd:TIGR02168 786 E L EA Q IE qlkeelkalrea LDELR AE L T LLNEEAANLRERLESLER R IAA T ERRLEDLEEQIEELSE D I --- ES L AA E IE 862
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 757 NAK E EL E LMAKKERESQM E LSA L QSMM A VQEE EL QVQAADMES L TRNIQIKEDLIKD L QMQ L VDP E D ip AM E R L TQEVLL 836
Cdd:TIGR02168 863 ELE E LI E ELESELEALLN E RAS L EEAL A LLRS EL EELSEELRE L ESKRSELRRELEE L REK L AQL E L -- RL E G L EVRIDN 940
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 525313646 837 L R E KVASVE S QGQ E ISGNRRQQLLLML E GLVDERS RL NEALQA 879
Cdd:TIGR02168 941 L Q E RLSEEY S LTL E EAEALENKIEDDE E EARRRLK RL ENKIKE 983
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
76-681
1.91e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 55.45
E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 76 VEN L NS Q N E AEL R RQ f E ERQQET E HVYE LL ENKIQL L Q EE SRLAKN E AARMA ---- A L VEAEK E CNLE L S E KLKG V TKNW 151
Cdd:TIGR02168 202 LKS L ER Q A E KAE R YK - E LKAELR E LELA LL VLRLEE L R EE LEELQE E LKEAE eele E L TAELQ E LEEK L E E LRLE V SELE 280
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 152 E DVPGD Q VKPDQYTEALAQRDKRIEE L NQS LA A ---- Q E R L VE QL SREKQQ L LH L L EE PTSM E VQ pm T EEL LKQQKLNSH 227
Cdd:TIGR02168 281 E EIEEL Q KELYALANEISRLEQQKQI L RER LA N lerq L E E L EA QL EELESK L DE L A EE LAEL E EK -- L EEL KEELESLEA 358
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 228 E ttitqqsvsdsh L A EL QEKIQQT E ATNKI L Q E K L NEMSYELKCAQESSQKQDGT I QN L KET L KSR E RET E E L Y Q V IE GQ 307
Cdd:TIGR02168 359 E ------------ L E EL EAELEEL E SRLEE L E E Q L ETLRSKVAQLELQIASLNNE I ER L EAR L ERL E DRR E R L Q Q E IE EL 426
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 308 NDTMAKLREMLH Q SQ L GQ L HSSE gtsp AQQ Q VA L LD L QS AL FCSQL E IQKLQRVVRQK ER Q LA DAKQCVQFV E A -- AAH E 385
Cdd:TIGR02168 427 LKKLEEAELKEL Q AE L EE L EEEL ---- EEL Q EE L ER L EE AL EELRE E LEEAEQALDAA ER E LA QLQARLDSL E R lq ENL E 502
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 386 SEQQKEASWKH NQ ELRKALQQ ------------------- L QEE LQ ----- N KSQQLR A WEAE K Y NE I ------------ 429
Cdd:TIGR02168 503 GFSEGVKALLK NQ SGLSGILG vlselisvdegyeaaieaa L GGR LQ avvve N LNAAKK A IAFL K Q NE L grvtflpldsik 582
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 430 -------- R TQEQ NI QHLNHSLSHKEQLLQEF R EL L Q Y R ------- D NS D ------ K T L EANEML --------------- 473
Cdd:TIGR02168 583 gteiqgnd R EILK NI EGFLGVAKDLVKFDPKL R KA L S Y L lggvlvv D DL D nalela K K L RPGYRI vtldgdlvrpggvit 662
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 474 ------------------- LE KLRQRIHD K AVA LE R A ID E KFSA LEE K E K EL R QLR LAVR E RDHDLER LR DV L SSN EA TM 534
Cdd:TIGR02168 663 ggsaktnssilerrreiee LE EKIEELEE K IAE LE K A LA E LRKE LEE L E E EL E QLR KELE E LSRQISA LR KD L ARL EA EV 742
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 535 QSM E SLLRAKGL E VEQ L STTCQN L QWLK EE M E TKFSRWQK E Q E SIIQ Q LQTSLHDRNKEV E D L SA ----- TLL CKLGPGQ 609
Cdd:TIGR02168 743 EQL E ERIAQLSK E LTE L EAEIEE L EERL EE A E EELAEAEA E I E ELEA Q IEQLKEELKALR E A L DE lrael TLL NEEAANL 822
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 525313646 610 S E IA E E L CQ R LQRK ER M L Q D l L SDRNKQVL E HEMEIQGLLQSVSTREQ E SQAAA E K L VQALMERNSE L QA LR 681
Cdd:TIGR02168 823 R E RL E S L ER R IAAT ER R L E D - L EEQIEELS E DIESLAAEIEELEELIE E LESEL E A L LNERASLEEA L AL LR 893
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
290-932
1.05e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 52.75
E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 290 L KSRER E T EEL YQVIEGQNDTMAK L REM L HQSQLGQLHSSEGT S PAQQQVA ll D LQ SA L FCSQL EI QK L QRVVRQKERQ L 369
Cdd:TIGR02168 234 L EELRE E L EEL QEELKEAEEELEE L TAE L QELEEKLEELRLEV S ELEEEIE -- E LQ KE L YALAN EI SR L EQQKQILRER L 311
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 370 A DAKQCVQFV EA AAH E S E QQKEASWKHNQ EL RKA L QQ L Q EEL QNKSQQ L RAW EAE KYN --- EIRTQ E QNIQH L NHSLSHK 446
Cdd:TIGR02168 312 A NLERQLEEL EA QLE E L E SKLDELAEELA EL EEK L EE L K EEL ESLEAE L EEL EAE LEE les RLEEL E EQLET L RSKVAQL 391
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 447 E QLLQEFRELLQYRDNSDKT LE AN eml L E K L R Q R I HDKAVA LE R A - ID E KFSA LEE K E K EL RQ L RLAVRERDHD LE R LR D 525
Cdd:TIGR02168 392 E LQIASLNNEIERLEARLER LE DR --- R E R L Q Q E I EELLKK LE E A e LK E LQAE LEE L E E EL EE L QEELERLEEA LE E LR E 468
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 526 V L SSN E ATMQSM E SL L RAKGLEVEQ L STTCQ NL QWLK E EMETKF s RW Q KEQES I IQQ L QTSLHDRNKEVEDLS A T L ---- 601
Cdd:TIGR02168 469 E L EEA E QALDAA E RE L AQLQARLDS L ERLQE NL EGFS E GVKALL - KN Q SGLSG I LGV L SELISVDEGYEAAIE A A L ggrl 547
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 602 --- LCKLGPGQSEIAEE L C Q - R L Q R KERMLQ D LLSDRNK Q VLEH E M -- E I Q G L L QSVSTRE q ESQAAAE K LVQA L MERNS 675
Cdd:TIGR02168 548 qav VVENLNAAKKAIAF L K Q n E L G R VTFLPL D SIKGTEI Q GNDR E I lk N I E G F L GVAKDLV - KFDPKLR K ALSY L LGGVL 626
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 676 ELQA L RQY L GGRDS L MSQAP I SNQQAE - V T P T G RLGKQTDQGSMQ I PS R d DSTSLTAK E DVSIPRSTLGD L DT - V A G L E K 753
Cdd:TIGR02168 627 VVDD L DNA L ELAKK L RPGYR I VTLDGD l V R P G G VITGGSAKTNSS I LE R - RREIEELE E KIEELEEKIAE L EK a L A E L R K 705
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 754 EL SNAK EELE LMA K KER E SQMEL SAL QSMM A VQ E E E LQVQAADMES L TRNIQIK E DL I KD L QMQ L vdpedipam E RLTQ E 833
Cdd:TIGR02168 706 EL EELE EELE QLR K ELE E LSRQI SAL RKDL A RL E A E VEQLEERIAQ L SKELTEL E AE I EE L EER L --------- E EAEE E 776
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 834 VLLLREKVASV E S Q GQEIS g NRRQQ L LLM L EG L VD E RSR LNE ALQAE R QLYS SL VKFH A hp ESSE R DRT L QVEL E GAQVL 913
Cdd:TIGR02168 777 LAEAEAEIEEL E A Q IEQLK - EELKA L REA L DE L RA E LTL LNE EAANL R ERLE SL ERRI A -- ATER R LED L EEQI E ELSED 853
650
....*....|....*....
gi 525313646 914 RSR L EEVLGRSL E RLNR LE 932
Cdd:TIGR02168 854 IES L AAEIEELE E LIEE LE 872
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
239-524
6.07e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 50.45
E-value: 6.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 239 S H L AELQEKIQQTEATNKILQE K LN E MSY E LKCAQESSQ K QDGTIQN L K E T L K S R E R E T E ELYQVIEGQNDTMAK L R E M L 318
Cdd:TIGR02169 695 S E L RRIENRLDELSQELSDASR K IG E IEK E IEQLEQEEE K LKERLEE L E E D L S S L E Q E I E NVKSELKELEARIEE L E E D L 774
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 319 H -- QSQ L GQ L HSSEGT S PAQQQV A L L --------------- DLQSA L FCSQ LE IQK L QRVVRQKER Q LA D A K QCVQFV E A 381
Cdd:TIGR02169 775 H kl EEA L ND L EARLSH S RIPEIQ A E L skleeevsriearlr EIEQK L NRLT LE KEY L EKEIQELQE Q RI D L K EQIKSI E K 854
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 382 AAHESEQQ KE ASWKHNQ EL RK AL QQ L QEE L QNKSQQLRAW EA ekyn EI R TQ E QN I QH L NHSLSH K EQL L Q E FREL L QYRD 461
Cdd:TIGR02169 855 EIENLNGK KE ELEEELE EL EA AL RD L ESR L GDLKKERDEL EA ---- QL R EL E RK I EE L EAQIEK K RKR L S E LKAK L EALE 930
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 462 NSDKTL E ---------- AN E ML LE KLRQRIHDKAVALE ------- R AI D E ------ KFSA L E EK EKE L RQL R L A VR ER DH 518
Cdd:TIGR02169 931 EELSEI E dpkgedeeip EE E LS LE DVQAELQRVEEEIR alepvnm L AI Q E yeevlk RLDE L K EK RAK L EEE R K A IL ER IE 1010
....*.
gi 525313646 519 DL E RLR 524
Cdd:TIGR02169 1011 EY E KKK 1016
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
241-455
2.27e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 47.84
E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 241 L AE LQ EK I QQT E ATNKI L QEKLNEMSYE L KCAQESSQKQDGT I QN L KET L KSR E R E TE EL YQV I EGQNDTMAKLR E M L h Q 320
Cdd:COG4942 29 L EQ LQ QE I AEL E KELAA L KKEEKALLKQ L AALERRIAALARR I RA L EQE L AAL E A E LA EL EKE I AELRAELEAQK E E L - A 107
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 321 SQ L GQ L HSSEGTS P AQQQVALL D LQS A LFCS Q L e IQK L QRVV R QKERQ L ADAKQCVQFVE A AAHESEQQK EA SWKHNQ E L 400
Cdd:COG4942 108 EL L RA L YRLGRQP P LALLLSPE D FLD A VRRL Q Y - LKY L APAR R EQAEE L RADLAELAALR A ELEAERAEL EA LLAELE E E 186
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 525313646 401 R K AL QQ L QE E L Q NKSQQ L RAWE AE KYN E IRTQE Q NIQH L NHSLSHK E QLLQEFR E 455
Cdd:COG4942 187 R A AL EA L KA E R Q KLLAR L EKEL AE LAA E LAELQ Q EAEE L EALIARL E AEAAAAA E 241
PTZ00121
PTZ00121 MAEBL; Provisional
30-516
2.38e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.60
E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 30 E ERMQQKYEASR E DIY K RNIEL K VEV E SL K RELQDK K QHLDKTWADV E NLNSQN EA ELRRQF E ERQQETEHVYELL E - N K 108
Cdd:PTZ00121 1313 E AKKADEAKKKA E EAK K KADAA K KKA E EA K KAAEAA K AEAEAAADEA E AAEEKA EA AEKKKE E AKKKADAAKKKAE E k K K 1392
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 109 IQLLQEESRLA K NE A ARMAALVE A E K ECN l E LSE K LKGVT K NW E - DVPGDQV K PDQYTEAL A QRD K RI EE LNQS l A AQER 187
Cdd:PTZ00121 1393 ADEAKKKAEED K KK A DELKKAAA A K K KAD - E AKK K AEEKK K AD E a KKKAEEA K KADEAKKK A EEA K KA EE AKKK - A EEAK 1470
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 188 LVEQLSREKQQLLHLL E - EPTSM E VQPMTE E LL K -- QQ K LNSH E TTITQQSVSDSHLAELQ E KIQQT EA TNKILQE K LN E 264
Cdd:PTZ00121 1471 KADEAKKKAEEAKKAD E a KKKAE E AKKKAD E AK K aa EA K KKAD E AKKAEEAKKADEAKKAE E AKKAD EA KKAEEKK K AD E 1550
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 265 M -- SY ELK C A Q E SSQKQDG ti QNLK E TLKSRE R ET EE LYQVI E GQNDTMA KL R E MLHQSQLGQLHSS E GTSPAQQQVALL 342
Cdd:PTZ00121 1551 L kk AE ELK K A E E KKKAEEA -- KKAE E DKNMAL R KA EE AKKAE E ARIEEVM KL Y E EEKKMKAEEAKKA E EAKIKAEELKKA 1628
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 343 D l QSALFCS QL EIQKLQRVVRQK E RQL A DAKQCVQFV E A A AHES E QQ K E A -- SW K HNQELR KA LQQ L -- QE E LQN K SQQ L 418
Cdd:PTZ00121 1629 E - EEKKKVE QL KKKEAEEKKKAE E LKK A EEENKIKAA E E A KKAE E DK K K A ee AK K AEEDEK KA AEA L kk EA E EAK K AEE L 1707
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 419 RAW EAE kyn E IRTQ E QNIQHLNHSLSHK E QLLQ E FR E llqy RDNSDKTLEAN E MLLE K LRQRIHDKAVAL E RAID EK FSA 498
Cdd:PTZ00121 1708 KKK EAE --- E KKKA E ELKKAEEENKIKA E EAKK E AE E ---- DKKKAEEAKKD E EEKK K IAHLKKEEEKKA E EIRK EK EAV 1780
490
....*....|....*...
gi 525313646 499 L EE KEK E LRQL R LAVRER 516
Cdd:PTZ00121 1781 I EE ELD E EDEK R RMEVDK 1798
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
388-959
2.42e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 48.51
E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 388 QQKEASWKHN QE LR K ALQQLQ EEL QNKS Q ------- Q LR AWEA E KYN EI RTQEQNIQH L NHSL S HK EQ LL Q EF RE L L QYR 460
Cdd:TIGR02168 235 EELREELEEL QE EL K EAEEEL EEL TAEL Q eleekle E LR LEVS E LEE EI EELQKELYA L ANEI S RL EQ QK Q IL RE R L ANL 314
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 461 DNSDKT LEA NEML LE KLRQRIHDKAVA LE RAID E --- KFSA LE EKEK EL RQLRLAVRE R DHD LE RLRDV L S S NE A TMQSM 537
Cdd:TIGR02168 315 ERQLEE LEA QLEE LE SKLDELAEELAE LE EKLE E lke ELES LE AELE EL EAELEELES R LEE LE EQLET L R S KV A QLELQ 394
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 538 ESL L RAK ---- GLEV E Q L STTCQN LQ WLK EE MET K FSRWQ - KE QESIIQQ L QTS L HDRNK E V E D L SAT L lc KLGPGQS E I 612
Cdd:TIGR02168 395 IAS L NNE ierl EARL E R L EDRRER LQ QEI EE LLK K LEEAE l KE LQAELEE L EEE L EELQE E L E R L EEA L -- EELREEL E E 472
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 613 AE EL ------- CQR LQ RKERM L QD L L ------ S DRN K QV L EHEMEIQ G L L QSV S TR ------- E QESQ AA AEKLV QA LME 672
Cdd:TIGR02168 473 AE QA ldaaere LAQ LQ ARLDS L ER L Q enlegf S EGV K AL L KNQSGLS G I L GVL S EL isvdegy E AAIE AA LGGRL QA VVV 552
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 673 R N SE ----- LQA L R Q YLG GR DSLM sq API S NQQA E VTPTG R LGKQTDQ G SMQIPSRDDSTSLTAKEDV S ipr ST LG DLDT 747
Cdd:TIGR02168 553 E N LN aakka IAF L K Q NEL GR VTFL -- PLD S IKGT E IQGND R EILKNIE G FLGVAKDLVKFDPKLRKAL S --- YL LG GVLV 627
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 748 V AG L EKE L SN AK EELE ---------------- LMAKKERESQMELSALQSMMAVQ EE ELQVQAADMES L TRNIQIKEDLI 811
Cdd:TIGR02168 628 V DD L DNA L EL AK KLRP gyrivtldgdlvrpgg VITGGSAKTNSSILERRREIEEL EE KIEELEEKIAE L EKALAELRKEL 707
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 812 KD L QMQ L VDPEDIP am E R L TQEVLL LR EKV A SV E SQGQEIS g N R RQ QL LLM L EG L VD E RSR L N E A L QAERQLYSSLVK fh 891
Cdd:TIGR02168 708 EE L EEE L EQLRKEL -- E E L SRQISA LR KDL A RL E AEVEQLE - E R IA QL SKE L TE L EA E IEE L E E R L EEAEEELAEAEA -- 782
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525313646 892 ahp E SS E RDRTLQVEL E GAQV LR SR L E E VLGR s L ER LN RLETLAAIGGAAAGDDTED T STEFT D SI E E 959
Cdd:TIGR02168 783 --- E IE E LEAQIEQLK E ELKA LR EA L D E LRAE - L TL LN EEAANLRERLESLERRIAA T ERRLE D LE E Q 846
PRK02224
PRK02224 DNA double-strand break repair Rad50 ATPase;
31-554
6.00e-05
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain]
Cd Length: 880
Bit Score: 46.96
E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 31 ER MQQKYEA S REDI y K RN IE L K V E VESLK R e L QDKKQH L DKTWADV E NLNS Q N E AELRRQF E ----- E RQQ E TEHVY E L L 105
Cdd:PRK02224 179 ER VLSDQRG S LDQL - K AQ IE E K E E KDLHE R - L NGLESE L AELDEEI E RYEE Q R E QARETRD E adevl E EHE E RREEL E T L 256
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 106 E NK I QL L Q E ESRLAKN E AARM A AL V EAEK E CNL EL S E KLKGVTKNWEDVPG D QVKPDQYT E A L AQ RD KRIEE - L NQSLA A 184
Cdd:PRK02224 257 E AE I ED L R E TIAETER E REEL A EE V RDLR E RLE EL E E ERDDLLAEAGLDDA D AEAVEARR E E L ED RD EELRD r L EECRV A 336
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 185 QERLV E QLSREKQQLLH L L E EPTSMEVQPMTE E LLKQQKLNSH E TTITQQSVSDSHLA EL Q E KIQQTEATNKILQEK L N E 264
Cdd:PRK02224 337 AQAHN E EAESLREDADD L E E RAEELREEAAEL E SELEEAREAV E DRREEIEELEEEIE EL R E RFGDAPVDLGNAEDF L E E 416
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 265 MSY E LKCAQ E SSQKQDG T IQNLK E TLKSR E R -------------- E TEELYQV IE GQNDTMAK L REM L HQSQLGQ ----- 325
Cdd:PRK02224 417 LRE E RDELR E REAELEA T LRTAR E RVEEA E A lleagkcpecgqpv E GSPHVET IE EDRERVEE L EAE L EDLEEEV eevee 496
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 326 - L HSS E GTSP A QQQVAL L DLQSALFCSQLEIQK lq RVVRQ K ERQLADAKQCVQFV EA A A H E SEQQKEASWKHNQ E L R KAL 404
Cdd:PRK02224 497 r L ERA E DLVE A EDRIER L EERREDLEELIAERR -- ETIEE K RERAEELRERAAEL EA E A E E KREAAAEAEEEAE E A R EEV 574
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 405 QQ L QEE L QNKSQQLRAW E -- AEKYNE I RTQ E QN I QH L NHSLSHKEQ L LQ E F RE L L QYRDNSDKT LEA -- N E MLL E KL R QR 480
Cdd:PRK02224 575 AE L NSK L AELKERIESL E ri RTLLAA I ADA E DE I ER L REKREALAE L ND E R RE R L AEKRERKRE LEA ef D E ARI E EA R ED 654
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313646 481 i HDK A VALERAID EK FSA L E E KEKE L RQLRL AV RERDHD LE R LR DVLSSN E ATMQSM E S L LR akgl E V E Q L STT 554
Cdd:PRK02224 655 - KER A EEYLEQVE EK LDE L R E ERDD L QAEIG AV ENELEE LE E LR ERREAL E NRVEAL E A L YD ---- E A E E L ESM 723
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
92-424
1.25e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 92 EE RQQETEHVYELLENKIQL L QE E srla KNE A A R MA AL VEAEK E cn L E LS E K LK GVTKNWEDVPGDQVKPDQYT E A L AQR 171
Cdd:TIGR02169 183 EE NIERLDLIIDEKRQQLER L RR E ---- REK A E R YQ AL LKEKR E -- Y E GY E L LK EKEALERQKEAIERQLASLE E E L EKL 256
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 172 DKR I E EL NQS L AAQ E R L V E Q L SRE kqqllhlleeptsme VQPMT EE LLKQQ K LNSH E TTITQQ S VSD S h L AE LQEKIQQT 251
Cdd:TIGR02169 257 TEE I S EL EKR L EEI E Q L L E E L NKK --------------- IKDLG EE EQLRV K EKIG E LEAEIA S LER S - I AE KERELEDA 320
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 252 E ATNKI L QEKLNEMSY E LKCAQESSQKQDGTIQN L K E TLKSRER E T E E L YQVI E GQNDTM A KL R EM L hqsqlgqlhsseg 331
Cdd:TIGR02169 321 E ERLAK L EAEIDKLLA E IEELEREIEEERKRRDK L T E EYAELKE E L E D L RAEL E EVDKEF A ET R DE L ------------- 387
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 332 tsp AQQQVA L LD L QSALFCSQL E IQK LQ RVVRQKERQ LAD AKQCVQFV EA AAH E S E QQ KE -------- AS WK HN Q ----- 398
Cdd:TIGR02169 388 --- KDYREK L EK L KREINELKR E LDR LQ EELQRLSEE LAD LNAAIAGI EA KIN E L E EE KE dkaleikk QE WK LE Q laadl 464
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 525313646 399 --------------- ELR K A L QQ LQ E EL QNKSQ Q L RA W E AE 424
Cdd:TIGR02169 465 skyeqelydlkeeyd RVE K E L SK LQ R EL AEAEA Q A RA S E ER 505
Mplasa_alph_rch
TIGR04523 helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
12-510
1.81e-04
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain]
Cd Length: 745
Bit Score: 45.40
E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 12 LNDL K KENFS L K L RIYF L EERM Q Q -- KY E ASREDIY K R N IE LK VEV E SLKR E LQD K KQHLDK T WADVEN L NSQNE a ELRR 89
Cdd:TIGR04523 189 IDKI K NKLLK L E L LLSN L KKKI Q K nk SL E SQISELK K Q N NQ LK DNI E KKQQ E INE K TTEISN T QTQLNQ L KDEQN - KIKK 267
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 90 Q FE E R Q Q E T E HVYELLENKIQL L QE esrl A K N E aarmaa LVEAEKECNLELSEK LK GVT KN W E D vpgdqv K PDQYTEALA 169
Cdd:TIGR04523 268 Q LS E K Q K E L E QNNKKIKELEKQ L NQ ---- L K S E ------ ISDLNNQKEQDWNKE LK SEL KN Q E K ------ K LEEIQNQIS 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 170 Q RD K R I EE LN QSLAAQERLVEQLSR E KQQLLHL LEE PTS m E VQPMTE E ll K Q QKLNSHETTIT Q QS vsdshla E L QE KIQ 249
Cdd:TIGR04523 332 Q NN K I I SQ LN EQISQLKKELTNSES E NSEKQRE LEE KQN - E IEKLKK E -- N Q SYKQEIKNLES Q IN ------- D L ES KIQ 401
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 250 QT E AT N KILQ E K lnemsyelkcaqessqkqdgt I QN L KETLKSR E R E T E E L YQV I EGQ N DTMAK L REMLHQSQ L GQLHSS 329
Cdd:TIGR04523 402 NQ E KL N QQKD E Q --------------------- I KK L QQEKELL E K E I E R L KET I IKN N SEIKD L TNQDSVKE L IIKNLD 460
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 330 EGTSPAQQ Q VAL L dlqsalfcs QLE I Q K LQRVVR QK ERQ L ADAKQCVQFVEAAAH E S E QQK easwkhnqelr K A L QQLQE 409
Cdd:TIGR04523 461 NTRESLET Q LKV L --------- SRS I N K IKQNLE QK QKE L KSKEKELKKLNEEKK E L E EKV ----------- K D L TKKIS 520
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 410 E L QN K SQQ L RAWEA EK YNE I RTQ E QNIQHLNHS L SH --- KEQLLQEFR E LLQYRDNSDKTLEAN E MLL E KLR Q R i HDKAV 486
Cdd:TIGR04523 521 S L KE K IEK L ESEKK EK ESK I SDL E DELNKDDFE L KK enl EKEIDEKNK E IEELKQTQKSLKKKQ E EKQ E LID Q K - EKEKK 599
490 500
....*....|....*....|....
gi 525313646 487 A L ERA I D EK FSALEEK EKEL RQLR 510
Cdd:TIGR04523 600 D L IKE I E EK EKKISSL EKEL EKAK 623
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
33-838
1.83e-04
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 45.49
E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 33 M Q QKYEA S R E DIY K RNIE L KVE V ES L KRE LQ DKKQHL D KT w AD VENLN SQ NEAE LR R Q FEERQQ E T E HVYE L L E NKI --- 109
Cdd:pfam15921 90 L Q RRLNE S N E LHE K QKFY L RQS V ID L QTK LQ EMQMER D AM - AD IRRRE SQ SQED LR N Q LQNTVH E L E AAKC L K E DML eds 168
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 110 -- Q LL Q EESRLAKN E AARM --- AA LV EA E KECNLELS E KLKGV T KNWEDV p G DQV kpdqy TEA L AQR D KR I EE L NQSLAA 184
Cdd:pfam15921 169 nt Q IE Q LRKMMLSH E GVLQ eir SI LV DF E EASGKKIY E HDSMS T MHFRSL - G SAI ----- SKI L REL D TE I SY L KGRIFP 242
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 185 Q E RLV E Q L SR E K Q QLL hlleeptsmevqpmte ELL K QQ KLNSH E TT I TQQS V sds HLAE L Q EK IQQTEATNKIL Q EK L NE 264
Cdd:pfam15921 243 V E DQL E A L KS E S Q NKI ---------------- ELL L QQ HQDRI E QL I SEHE V --- EITG L T EK ASSARSQANSI Q SQ L EI 303
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 265 MSYELKCAQESSQK Q DGTIQNLKET L K S RE RE TEEL Y Q viegqndtm A K LR E MLH Q SQ L GQLHSS E GTSPAQ Q qval LDL 344
Cdd:pfam15921 304 IQEQARNQNSMYMR Q LSDLESTVSQ L R S EL RE AKRM Y E --------- D K IE E LEK Q LV L ANSELT E ARTERD Q ---- FSQ 370
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 345 Q S ALFCS QL ei QKL QRVVRQK E RQ L ADA K Q cvqfveaaaheseq Q KEAS W KHN ------- QE LR KA L QQLQE E L Q NKSQQ 417
Cdd:pfam15921 371 E S GNLDD QL -- QKL LADLHKR E KE L SLE K E -------------- Q NKRL W DRD tgnsiti DH LR RE L DDRNM E V Q RLEAL 434
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 418 L R A WEA E KYNEIRT Q EQN IQ HL N H SL SHKEQ L LQEFRELLQYRDNSDKT L E A NE M L LE KLRQRIH D KAVA L E raid EK FS 497
Cdd:pfam15921 435 L K A MKS E CQGQMER Q MAA IQ GK N E SL EKVSS L TAQLESTKEMLRKVVEE L T A KK M T LE SSERTVS D LTAS L Q ---- EK ER 510
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 498 A L E EKEK E LRQ LR LA V RERDHD L ER L R --- D V L SSNEATMQSMESLLRA K GLEV E Q L STTCQ N LQW L KEEMETKFSRW Q K 574
Cdd:pfam15921 511 A I E ATNA E ITK LR SR V DLKLQE L QH L K neg D H L RNVQTECEALKLQMAE K DKVI E I L RQQIE N MTQ L VGQHGRTAGAM Q V 590
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 575 E Q esii Q QL QTSLH DR NK E VEDLS at L L CKLGPGQSEIA E ELCQR L QRKERM L QDLL S D R NKQ V LEHEM E IQG LL QS V S T 654
Cdd:pfam15921 591 E K ---- A QL EKEIN DR RL E LQEFK -- I L KDKKDAKIREL E ARVSD L ELEKVK L VNAG S E R LRA V KDIKQ E RDQ LL NE V K T 664
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 655 REQ E SQAAA E KL vq ALME RN SELQALRQYLGGRDSL M SQAPISNQQAEVTP T GRLGKQT D QGS M QI psrddst SLTAKED 734
Cdd:pfam15921 665 SRN E LNSLS E DY -- EVLK RN FRNKSEEMETTTNKLK M QLKSAQSELEQTRN T LKSMEGS D GHA M KV ------- AMGMQKQ 735
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 735 VSIP R STLGD L DT - VAG LE KELS NA KE E LELMAKKERESQM ELS ALQSMMAVQEE EL Q V QAADMES L TRNIQIK E DLIKD 813
Cdd:pfam15921 736 ITAK R GQIDA L QS k IQF LE EAMT NA NK E KHFLKEEKNKLSQ ELS TVATEKNKMAG EL E V LRSQERR L KEKVANM E VALDK 815
810 820
....*....|....*....|....*
gi 525313646 814 LQM Q LVDPE DI pa ME R LT QE VLL L R 838
Cdd:pfam15921 816 ASL Q FAECQ DI -- IQ R QE QE SVR L K 838
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
331-538
2.48e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 44.37
E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 331 GTSP A Q Q QV A LLDLQSA L FCS Q L EI QK L QRVVRQKERQLADAKQCVQFV E AAAHESEQQKE A SWKHNQE L RKA L QQ L QE E 410
Cdd:COG4942 12 ALAA A A Q AD A AAEAEAE L EQL Q Q EI AE L EKELAALKKEEKALLKQLAAL E RRIAALARRIR A LEQELAA L EAE L AE L EK E 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 411 LQNKSQQ L R A WEA E KYNEI R TQEQNIQHLNHS L SHKEQLLQEFREL LQY RDNSDKTLEANEML L EKLRQRIHDKAVA LE R 490
Cdd:COG4942 92 IAELRAE L E A QKE E LAELL R ALYRLGRQPPLA L LLSPEDFLDAVRR LQY LKYLAPARREQAEE L RADLAELAALRAE LE A 171
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 525313646 491 AID E KFSA L E E K E K E LRQ L RLAVR ER DHD L E RL RDV L SSNE A TMQSME 538
Cdd:COG4942 172 ERA E LEAL L A E L E E E RAA L EALKA ER QKL L A RL EKE L AELA A ELAELQ 219
sbcc
TIGR00618 exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
32-542
3.33e-04
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain]
Cd Length: 1042
Bit Score: 44.57
E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 32 R MQQKYEA S RED I YKRNIE L KVEVES L --- K RE L QD K K Q H L D K TWADVENLNSQNEAELRRQFEERQ Q ETE hvyel LENK 108
Cdd:TIGR00618 358 R DAHEVAT S IRE I SCQQHT L TQHIHT L qqq K TT L TQ K L Q S L C K ELDILQREQATIDTRTSAFRDLQG Q LAH ----- AKKQ 432
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 109 IQ L L Q EESR L AKNEAARM A ALVEA EK ECNL E LSEK LK GVTKNWEDV pgd QVKPD Q Y T EAL A QRDK R IE EL nqsl AAQERL 188
Cdd:TIGR00618 433 QE L Q Q RYAE L CAAAITCT A QCEKL EK IHLQ E SAQS LK EREQQLQTK --- EQIHL Q E T RKK A VVLA R LL EL ---- QEEPCP 505
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 189 VEQLSREKQQLLHLLEE P TSMEVQPMTE E LLKQ Q KLN S H E TTIT Q QSVSDSHL A E L Q E KI Q QTEATNK IL QEKL N EMSYE 268
Cdd:TIGR00618 506 LCGSCIHPNPARQDIDN P GPLTRRMQRG E QTYA Q LET S E E DVYH Q LTSERKQR A S L K E QM Q EIQQSFS IL TQCD N RSKED 585
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 269 L - KCAQESSQK QD G T IQNLKETLKSRERETEE L YQVIEG Q ND tmak LREM LH QS Q LG Q LHSSEG T SPAQQ Q VA L L --- DL 344
Cdd:TIGR00618 586 I p NLQNITVRL QD L T EKLSEAEDMLACEQHAL L RKLQPE Q DL ---- QDVR LH LQ Q CS Q ELALKL T ALHAL Q LT L T qer VR 661
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 345 QS AL FCSQ L EIQK L QRVVRQ ------ KER QL ADA K QCVQFVEAAAH E S E QQK E ASWKHNQ E LRK A LQQ L QEE L QNK ---- 414
Cdd:TIGR00618 662 EH AL SIRV L PKEL L ASRQLA lqkmqs EKE QL TYW K EMLAQCQTLLR E L E THI E EYDREFN E IEN A SSS L GSD L AAR edal 741
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 415 S Q Q L RAWEAEKYNEIRTQEQNIQHL N HSLSHKE Q LLQ E FRE L LQYRDNSDKTL E ANEM LL EK L RQR I HDKAVAL E rai D E 494
Cdd:TIGR00618 742 N Q S L KELMHQARTVLKARTEAHFNN N EEVTAAL Q TGA E LSH L AAEIQFFNRLR E EDTH LL KT L EAE I GQEIPSD E --- D I 818
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 525313646 495 KFSAL E EKEK E LR Q LRLAVR E RDHD L ERLRDV L SSN E ATMQSMES L LR 542
Cdd:TIGR00618 819 LNLQC E TLVQ E EE Q FLSRLE E KSAT L GEITHQ L LKY E ECSKQLAQ L TQ 866
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
351-527
4.29e-04
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 44.52
E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 351 SQ LE IQKLQRVVRQKE R Q L ADAKQCVQFVE A AAHES E QQK E ASWKHNQE LR KA L QQ L QEEL - Q N KSQQ L RAW E A ekyn EI 429
Cdd:COG4913 272 AE LE YLRAALRLWFAQ R R L ELLEAELEELR A ELARL E AEL E RLEARLDA LR EE L DE L EAQI r G N GGDR L EQL E R ---- EI 347
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 430 RTQ E QNIQHLNHSLSHK E Q LL QEF -------- R E LLQY R DNSDKT LEA neml LE KLRQRIHDKAVAL E R A IDEKFSA L E E 501
Cdd:COG4913 348 ERL E RELEERERRRARL E A LL AAL glplpasa E E FAAL R AEAAAL LEA ---- LE EELEALEEALAEA E A A LRDLRRE L R E 423
170 180
....*....|....*....|....*.
gi 525313646 502 K E K E LRQ L RLAVRERDHD L ER LRD V L 527
Cdd:COG4913 424 L E A E IAS L ERRKSNIPAR L LA LRD A L 449
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
352-642
5.16e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 43.90
E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 352 QL EI QK L QRVVRQKERQ L ADAKQCVQFV E AAAHESEQQKEASWKHNQ EL RKA L QQ L Q E E L QNKSQQ L RAWE - A E KYN E IR 430
Cdd:TIGR02169 722 EK EI EQ L EQEEEKLKER L EELEEDLSSL E QEIENVKSELKELEARIE EL EED L HK L E E A L NDLEAR L SHSR i P E IQA E LS 801
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 431 TQ E QNIQHLNHS L SHK EQ L L QEFRELLQ Y RDNSDKT L EANEML L EKLRQR I HDKAVA L ERAID E KFSA LEE K E KE LR Q L r 510
Cdd:TIGR02169 802 KL E EEVSRIEAR L REI EQ K L NRLTLEKE Y LEKEIQE L QEQRID L KEQIKS I EKEIEN L NGKKE E LEEE LEE L E AA LR D L - 880
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 511 lav RE R DH DL ERL RD V L S sneatmqsmesllrakglev E QL STTCQNLQW L KEEM E T K FS R w QK E QESIIQQ L Q tslh DR 590
Cdd:TIGR02169 881 --- ES R LG DL KKE RD E L E -------------------- A QL RELERKIEE L EAQI E K K RK R - LS E LKAKLEA L E ---- EE 932
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 525313646 591 NK E V ED LSATLLCK lg P GQSEIA E ELCQR LQR K E RMLQD L LSDRNKQVL E H E 642
Cdd:TIGR02169 933 LS E I ED PKGEDEEI -- P EEELSL E DVQAE LQR V E EEIRA L EPVNMLAIQ E Y E 982
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
256-881
7.50e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 43.52
E-value: 7.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 256 KI L QEKLN E MSYELKCAQE ss QKQDGTIQNLKET L K S R E R E T E E L YQV I EGQNDTMAKLREM L HQSQLGQLHSS E GTS pa 335
Cdd:TIGR02169 214 QA L LKEKR E YEGYELLKEK -- EALERQKEAIERQ L A S L E E E L E K L TEE I SELEKRLEEIEQL L EELNKKIKDLG E EEQ -- 289
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 336 qqqval L DLQSALFCSQL EI QK L Q R VVRQ KER Q L A DA KQCVQFV EA AAHESEQQK E ASWKHNQ E L RK ALQQ L Q EE LQNKS 415
Cdd:TIGR02169 290 ------ L RVKEKIGELEA EI AS L E R SIAE KER E L E DA EERLAKL EA EIDKLLAEI E ELEREIE E E RK RRDK L T EE YAELK 363
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 416 QQ L RAWE AE KYNEIRTQEQNIQH L NHSLSHK E Q L LQ E FR EL LQYR D NSDKT L EANEML L EK L RQR I HD kava L E RA I D E K 495
Cdd:TIGR02169 364 EE L EDLR AE LEEVDKEFAETRDE L KDYREKL E K L KR E IN EL KREL D RLQEE L QRLSEE L AD L NAA I AG ---- I E AK I N E L 439
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 496 FSAL E E K EK E LRQLRLAVRERDH DL ERLRDV L SSNEATMQSM E SL L RAKGL E VEQLSTTCQNL qwlk EE METKFSRWQKE 575
Cdd:TIGR02169 440 EEEK E D K AL E IKKQEWKLEQLAA DL SKYEQE L YDLKEEYDRV E KE L SKLQR E LAEAEAQARAS ---- EE RVRGGRAVEEV 515
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 576 QESI IQ QLQTSLHDRNKEV E DLSATLLCKL G P ------- GQSEI A E E LCQR L Q R KE -- R M ---- L QDLLSD R NKQVLEH E 642
Cdd:TIGR02169 516 LKAS IQ GVHGTVAQLGSVG E RYATAIEVAA G N rlnnvvv EDDAV A K E AIEL L K R RK ag R A tflp L NKMRDE R RDLSILS E 595
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 643 MEIQ G LLQSVSTREQESQA A AEKLVQALMERNS e LQ A L R QYL G G ------------ RDSL M SQAPISNQQAEVTPT g RLG 710
Cdd:TIGR02169 596 DGVI G FAVDLVEFDPKYEP A FKYVFGDTLVVED - IE A A R RLM G K yrmvtlegelfe KSGA M TGGSRAPRGGILFSR - SEP 673
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 711 KQTDQGSMQIPSRDDST S LTAK E DVS I PRSTLGDLDTVAGLEKELSNAKE E L E LMAKK E RESQME L SA L QSMMAVQ E E E L 790
Cdd:TIGR02169 674 AELQRLRERLEGLKREL S SLQS E LRR I ENRLDELSQELSDASRKIGEIEK E I E QLEQE E EKLKER L EE L EEDLSSL E Q E I 753
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 791 QVQAADMES L TRN I QIK E DLIKD L QMQ L V D P E DIPAME R --- LTQ E VLL L R E K V ASV E SQGQ EI SG -- NR RQQLLLM LE G 865
Cdd:TIGR02169 754 ENVKSELKE L EAR I EEL E EDLHK L EEA L N D L E ARLSHS R ipe IQA E LSK L E E E V SRI E ARLR EI EQ kl NR LTLEKEY LE K 833
650
....*....|....*.
gi 525313646 866 LVD E RSRLNEA L QAER 881
Cdd:TIGR02169 834 EIQ E LQEQRID L KEQI 849
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
335-547
8.10e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 42.83
E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 335 A QQQVA L LD LQ SALFCSQL E IQK L QRVVRQKER QLA DAKQCVQFVEAAAHES EQ QKE A SWKHNQ EL R K ALQQ L QE EL QNK 414
Cdd:COG4942 23 A EAEAE L EQ LQ QEIAELEK E LAA L KKEEKALLK QLA ALERRIAALARRIRAL EQ ELA A LEAELA EL E K EIAE L RA EL EAQ 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 415 SQQ L RAWEAEK Y -------------- NEIRTQEQNI Q H L NHSLSHKEQLLQ E F R EL L QYRDNSDKT LEA NEML LE K L RQR 480
Cdd:COG4942 103 KEE L AELLRAL Y rlgrqpplalllsp EDFLDAVRRL Q Y L KYLAPARREQAE E L R AD L AELAALRAE LEA ERAE LE A L LAE 182
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 525313646 481 IHDKAV ALE RAID E KFSA L EEK EKEL RQ L RLAVR E RDHDL E R L RDVLSSN EA TMQSMESLLR A K G LE 547
Cdd:COG4942 183 LEEERA ALE ALKA E RQKL L ARL EKEL AE L AAELA E LQQEA E E L EALIARL EA EAAAAAERTP A A G FA 249
sbcc
TIGR00618 exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
35-693
9.78e-04
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain]
Cd Length: 1042
Bit Score: 43.03
E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 35 QKYEASREDIYKRNI E LKV E VESLKRE L QDKKQHLDKTW A DVEN L NSQN E A - ELR R QFEERQQETEH V YELLENKIQLLQ 113
Cdd:TIGR00618 235 LQQTQQSHAYLTQKR E AQE E QLKKQQL L KQLRARIEELR A QEAV L EETQ E R i NRA R KAAPLAAHIKA V TQIEQQAQRIHT 314
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 114 E - E S RLAKNEAAR M AALVEAEKECNL E LSEK L KGVTKNW E DVPG D QV kp DQY T EALAQRDKRIEELNQSLAA Q ER --- L V 189
Cdd:TIGR00618 315 E l Q S KMRSRAKLL M KRAAHVKQQSSI E EQRR L LQTLHSQ E IHIR D AH -- EVA T SIREISCQQHTLTQHIHTL Q QQ ktt L T 392
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 190 EQ L SREKQQ L LH L LE E PTSMEVQPMTEEL L KQ Q KLNSH etti T QQ SVSDSHLAELQEK I QQ T EATN K ILQEK L N E MSYE L 269
Cdd:TIGR00618 393 QK L QSLCKE L DI L QR E QATIDTRTSAFRD L QG Q LAHAK ---- K QQ ELQQRYAELCAAA I TC T AQCE K LEKIH L Q E SAQS L 468
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 270 K CAQESS Q KQDGTIQNLKETLKSRERETE EL yqvie GQNDTMAKLREMLHQSQLGQLHSSEGTSPAQ Q QV -- ALLD L QSA 347
Cdd:TIGR00618 469 K EREQQL Q TKEQIHLQETRKKAVVLARLL EL ----- QEEPCPLCGSCIHPNPARQDIDNPGPLTRRM Q RG eq TYAQ L ETS 543
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 348 LFCSQLEIQKLQRVVRQKER Q LADAK Q CVQFVEAAAHE S EQQKEASWKHNQE L RKALQQ L Q E ELQNKSQQLR A WEAEKYN 427
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKE Q MQEIQ Q SFSILTQCDNR S KEDIPNLQNITVR L QDLTEK L S E AEDMLACEQH A LLRKLQP 623
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 428 E IRT Q E -- QNI Q HLNHS L SH K EQL L QEFREL L QYRDNSDKT L EANEMLL E K L -- RQ RIHD K AVALERAIDEKFSA L EEKE 503
Cdd:TIGR00618 624 E QDL Q D vr LHL Q QCSQE L AL K LTA L HALQLT L TQERVREHA L SIRVLPK E L L as RQ LALQ K MQSEKEQLTYWKEM L AQCQ 703
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 504 KE LR Q L RLAVR E R D HDLERLRDVL SS NEATMQSM E SL L RAKGL E VEQLST T CQNLQWLKEEMETKFSRWQKEQESIIQQ L 583
Cdd:TIGR00618 704 TL LR E L ETHIE E Y D REFNEIENAS SS LGSDLAAR E DA L NQSLK E LMHQAR T VLKARTEAHFNNNEEVTAALQTGAELSH L 783
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 584 QTSLHDR N KEV E DLSAT L LCKLGPGQS EI AEEL cqrlqr KERM LQ DLLSDRNKQVLEHEM E IQGLLQSVS T REQESQAAA 663
Cdd:TIGR00618 784 AAEIQFF N RLR E EDTHL L KTLEAEIGQ EI PSDE ------ DILN LQ CETLVQEEEQFLSRL E EKSATLGEI T HQLLKYEEC 857
650 660 670
....*....|....*....|....*....|
gi 525313646 664 E K LVQA L MERNSELQA L RQY L G G RDSLMS Q 693
Cdd:TIGR00618 858 S K QLAQ L TQEQAKIIQ L SDK L N G INQIKI Q 887
mukB
PRK04863 chromosome partition protein MukB;
169-547
2.18e-03
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain]
Cd Length: 1486
Bit Score: 42.25
E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 169 A Q R D KRIE E L NQSLAAQERLVEQ LS REK Q Q L LH L LEE --------- PTSM E VQ P MT E ELLKQQKLNSH E T titqqsvsds 239
Cdd:PRK04863 782 A A R E KRIE Q L RAEREELAERYAT LS FDV Q K L QR L HQA fsrfigshl AVAF E AD P EA E LRQLNRRRVEL E R ---------- 851
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 240 H LA ELQEKI QQ TEATNKILQ E K L NEMS yel KCAQESSQKQ D gtiqnlk ETL KS R ER E TE E ly Q VI E GQN dtm AK LREML H 319
Cdd:PRK04863 852 A LA DHESQE QQ QRSQLEQAK E G L SALN --- RLLPRLNLLA D ------- ETL AD R VE E IR E -- Q LD E AEE --- AK RFVQQ H 916
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 320 QSQ L G QL hssegtspa QQQ V AL L D lqsalf CSQLEIQK L QRVVR Q KERQLA DAKQ CV ---- QF V EAA AH ---- ESEQQKE 391
Cdd:PRK04863 917 GNA L A QL --------- EPI V SV L Q ------ SDPEQFEQ L KQDYQ Q AQQTQR DAKQ QA falt EV V QRR AH fsye DAAEMLA 981
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 392 ASWKH N QE LR KA L Q Q LQE E LQNKSQ QLR AWE A E -- K YN EIRTQ eqniqh L NH S LSH K E Q L LQE FREL LQ yrdns D KTLE A 469
Cdd:PRK04863 982 KNSDL N EK LR QR L E Q AEQ E RTRARE QLR QAQ A Q la Q YN QVLAS ------ L KS S YDA K R Q M LQE LKQE LQ ----- D LGVP A 1050
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 470 NEMLL E KL R Q R i H D KAV A LER A IDEKFSA LE EK ---- E K E LRQ L RLAV R ERDH D LERL R DVLSSNE A TMQSMES L LRAK G 545
Cdd:PRK04863 1051 DSGAE E RA R A R - R D ELH A RLS A NRSRRNQ LE KQ ltfc E A E MDN L TKKL R KLER D YHEM R EQVVNAK A GWCAVLR L VKDN G 1129
..
gi 525313646 546 L E 547
Cdd:PRK04863 1130 V E 1131
MukB
COG3096 Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
29-302
2.70e-03
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain]
Cd Length: 1470
Bit Score: 41.86
E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 29 LEE RMQQKY EA -- SREDIYK R NIELKV EV E SLK RE L Q D KK Q H LD ------------------- KTWADVEN L NSQ N EAEL 87
Cdd:COG3096 363 LEE QEEVVE EA ae QLAEAEA R LEAAEE EV D SLK SQ L A D YQ Q A LD vqqtraiqyqqavqaleka RALCGLPD L TPE N AEDY 442
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 88 RRQ F EERQ Q ETEH vyellenki QL L QE E SR L AKNE AAR maalve AEK E CNL EL SE K LK G -- VTKNWEDVPGDQVKPDQYT 165
Cdd:COG3096 443 LAA F RAKE Q QATE --------- EV L EL E QK L SVAD AAR ------ RQF E KAY EL VC K IA G ev ERSQAWQTARELLRRYRSQ 507
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 166 E ALAQR DKRIE ---- EL N Q S L AA Q ERLVEQ L SREK Q QLLHL L EEPTSM E VQPMTE E LLKQQKLNSHETTIT Q Q S VSDSH L 241
Cdd:COG3096 508 Q ALAQR LQQLR aqla EL E Q R L RQ Q QNAERL L EEFC Q RIGQQ L DAAEEL E ELLAEL E AQLEELEEQAAEAVE Q R S ELRQQ L 587
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313646 242 AE L QEK I QQTE A TNKI --- L Q EK L NEMSYELKC A QES SQ KQDGTI Q N L K E TLKSRER E TE EL YQ 302
Cdd:COG3096 588 EQ L RAR I KELA A RAPA wla A Q DA L ERLREQSGE A LAD SQ EVTAAM Q Q L L E REREATV E RD EL AA 651
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
50-251
2.73e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 41.29
E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 50 E LKV E V E S L KR E LQDKKQH L DKTWADVEN L NS Q neael RRQF E E R QQETEHVYEL LE NKIQL L QE E SRLAKN E A A RMA A L 129
Cdd:COG4942 24 E AEA E L E Q L QQ E IAELEKE L AALKKEEKA L LK Q ----- LAAL E R R IAALARRIRA LE QELAA L EA E LAELEK E I A ELR A E 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 130 V EA E KE cnl EL S E K L KGVTKNWE ---------- DVPG D Q V KPD QY TEA LA Q - R DKRI EEL NQS LA AQER L VEQ L SR E KQQ 198
Cdd:COG4942 99 L EA Q KE --- EL A E L L RALYRLGR qpplalllsp EDFL D A V RRL QY LKY LA P a R REQA EEL RAD LA ELAA L RAE L EA E RAE 175
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 525313646 199 L LH LL E E PTSMEVQPMTEELLK Q QK L NSH E TTITQQSVSDSH L AELQ E KIQQT 251
Cdd:COG4942 176 L EA LL A E LEEERAALEALKAER Q KL L ARL E KELAELAAELAE L QQEA E ELEAL 228
Mplasa_alph_rch
TIGR04523 helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
50-602
2.79e-03
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain]
Cd Length: 745
Bit Score: 41.54
E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 50 E L KVEVES L KRE L QDK K QHLD K TWA D VENL NS Q ---------- N E A EL RRQFEERQQETEHVYEL L e NK I QLLQE E SRLA 119
Cdd:TIGR04523 79 I L EQQIKD L NDK L KKN K DKIN K LNS D LSKI NS E ikndkeqknk L E V EL NKLEKQKKENKKNIDKF L - TE I KKKEK E LEKL 157
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 120 K N EAARMAALV E AEKECNLE L SEKLKGVT KN WEDVPGDQV K PDQYTEA L AQRDKRIEE L NQSLAAQERLVE QL SREKQQL 199
Cdd:TIGR04523 158 N N KYNDLKKQK E ELENELNL L EKEKLNIQ KN IDKIKNKLL K LELLLSN L KKKIQKNKS L ESQISELKKQNN QL KDNIEKK 237
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 200 LHLLE E ptsmevqpmteell K QQKLNSHE T TIT Q QSVSDSH - LAE L Q EK IQQT E AT NK ILQ E KLNEMS - YELKCAQESS Q 277
Cdd:TIGR04523 238 QQEIN E -------------- K TTEISNTQ T QLN Q LKDEQNK i KKQ L S EK QKEL E QN NK KIK E LEKQLN q LKSEISDLNN Q 303
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 278 K QDGTIQN LK ET LK SR E RET EE LYQV I EGQ N DTMAK L R E mlhqs Q LG QL HSS egtspaqqqva L LDLQ S ALFCS Q L E IQK 357
Cdd:TIGR04523 304 K EQDWNKE LK SE LK NQ E KKL EE IQNQ I SQN N KIISQ L N E ----- Q IS QL KKE ----------- L TNSE S ENSEK Q R E LEE 367
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 358 L Q RVVRQKERQLADA KQ CVQFV E AAAHES E QQKEASW K H NQ ELRKALQQ LQ E E LQNKSQQ --- L RAWEAEKYN EI RTQEQ 434
Cdd:TIGR04523 368 K Q NEIEKLKKENQSY KQ EIKNL E SQINDL E SKIQNQE K L NQ QKDEQIKK LQ Q E KELLEKE ier L KETIIKNNS EI KDLTN 447
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 435 NIQHLNHSLSHKEQLLQEFREL L QYRDN S DKTLEA N eml LE KLRQRIHD K AVA L ERAID EK f SA LEEK E K E L RQLRLAVR 514
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQ L KVLSR S INKIKQ N --- LE QKQKELKS K EKE L KKLNE EK - KE LEEK V K D L TKKISSLK 523
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 515 E RDHD LE ---- RLRDVL S SN E ATMQSMESL L RAKG LE v EQLSTTCQNLQW LK EE m ETKFSRW Q K E QESI I Q Q LQTSLH D R 590
Cdd:TIGR04523 524 E KIEK LE sekk EKESKI S DL E DELNKDDFE L KKEN LE - KEIDEKNKEIEE LK QT - QKSLKKK Q E E KQEL I D Q KEKEKK D L 601
570
....*....|..
gi 525313646 591 N KE V E DLSATLL 602
Cdd:TIGR04523 602 I KE I E EKEKKIS 613
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
751-969
3.76e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.08
E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 751 LE K EL SNAKE EL ELMAKKER E SQM EL SA L QSMMAVQEE E LQVQA A DMES L TRN I QIK E DLIKD L QMQ L V dp E DIPAMER L 830
Cdd:COG1196 251 LE A EL EELEA EL AELEAELE E LRL EL EE L ELELEEAQA E EYELL A ELAR L EQD I ARL E ERRRE L EER L E -- E LEEELAE L 328
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 831 TQ E VLL L R E KVASV E SQGQ E IS g NRRQQLLLM L EGLVDERSRLNEA L QAERQLYSS L V kfhahpess E RDRTLQVELEGA 910
Cdd:COG1196 329 EE E LEE L E E ELEEL E EELE E AE - EELEEAEAE L AEAEEALLEAEAE L AEAEEELEE L A --------- E ELLEALRAAAEL 398
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 525313646 911 QVLRSR LEE VLGRS LERL N RLE TLAAIGGA A AGDDT E DTST E FTDSI E EEAAHHSHQQL 969
Cdd:COG1196 399 AAQLEE LEE AEEAL LERL E RLE EELEELEE A LAELE E EEEE E EEALE E AAEEEAELEEE 457
CwlO1
COG3883 Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
237-425
4.22e-03
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain]
Cd Length: 379
Bit Score: 40.58
E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 237 S D SHLAEL Q EKIQQTE A TNKIL Q EK L NEMSY EL KCAQ E SSQKQDGTIQN L KETLKSRER E TE E LYQV IE GQNDTMAKL -- 314
Cdd:COG3883 14 A D PQIQAK Q KELSELQ A ELEAA Q AE L DALQA EL EELN E EYNELQAELEA L QAEIDKLQA E IA E AEAE IE ERREELGER ar 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 315 --- R EMLHQ S Q L GQ L HS SE GT S PAQQQVAL L DLQSAL fc SQLEIQK L QRVVRQK E RQL A DAKQCVQFV EA AAH E S E QQ K E 391
Cdd:COG3883 94 aly R SGGSV S Y L DV L LG SE SF S DFLDRLSA L SKIADA -- DADLLEE L KADKAEL E AKK A ELEAKLAEL EA LKA E L E AA K A 171
170 180 190
....*....|....*....|....*....|....
gi 525313646 392 ASWKHNQ E LRKA L Q QL QE E LQNKSQ QL RAW EAE K 425
Cdd:COG3883 172 ELEAQQA E QEAL L A QL SA E EAAAEA QL AEL EAE L 205
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
165-465
4.41e-03
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 41.21
E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 165 TEALAQRD K R IE E L N Q SLAAQERLV E Q L SREKQQ L LHLL E EPT S M ------ EVQPMT E E L L K - QQK LN SH E TTITQQSV - 236
Cdd:TIGR02169 715 SRKIGEIE K E IE Q L E Q EEEKLKERL E E L EEDLSS L EQEI E NVK S E lkelea RIEELE E D L H K l EEA LN DL E ARLSHSRI p 794
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 237 - SDSH L AE L Q E KIQQT EA TNKILQE KLN EMSY E LKCAQESS Q KQDGTIQN LKE TL KS R E R E T E E L YQVI E gqn DTMAK L R 315
Cdd:TIGR02169 795 e IQAE L SK L E E EVSRI EA RLREIEQ KLN RLTL E KEYLEKEI Q ELQEQRID LKE QI KS I E K E I E N L NGKK E --- ELEEE L E 871
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 316 E ml HQSQ L GQ L H S S egtspaqqqva L L DL QSALFCSQLEIQK L Q R VVRQK E R Q LADAKQCVQFVE A AAHES E QQKEASWK 395
Cdd:TIGR02169 872 E -- LEAA L RD L E S R ----------- L G DL KKERDELEAQLRE L E R KIEEL E A Q IEKKRKRLSELK A KLEAL E EELSEIED 938
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 525313646 396 HNQ E LRK ------ A L QQL Q E ELQ NKSQQL RA W E AEKYNE I RTQ E QNIQH L NHSLSHKEQ L LQ E FREL L QYRDNSD K 465
Cdd:TIGR02169 939 PKG E DEE ipeeel S L EDV Q A ELQ RVEEEI RA L E PVNMLA I QEY E EVLKR L DELKEKRAK L EE E RKAI L ERIEEYE K 1014
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
446-700
5.51e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.13
E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 446 K EQL L QE FR EL LQYRDNSD K TLE A NEML L EK L RQ RI hdka V AL E R A I DEKFSA L EEK E K EL RQ L RLAVR E RDHD LE RLRD 525
Cdd:COG4942 29 L EQL Q QE IA EL EKELAALK K EEK A LLKQ L AA L ER RI ---- A AL A R R I RALEQE L AAL E A EL AE L EKEIA E LRAE LE AQKE 104
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 526 V L SSNEATMQSMESLLRAK - G L EV E QLSTTCQN LQ W LK E emetk FSRWQK EQ ESIIQQLQTS L HDRNK E V E DLS A T L lck 604
Cdd:COG4942 105 E L AELLRALYRLGRQPPLA l L L SP E DFLDAVRR LQ Y LK Y ----- LAPARR EQ AEELRADLAE L AALRA E L E AER A E L --- 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 605 lgpgqseia E E L CQR L QRKERM L QD L LSD R N K qvlehemeiqg LL QSVSTREQ E SQ A AAEK L V Q ALM E RNSELQA L RQYL 684
Cdd:COG4942 177 --------- E A L LAE L EEERAA L EA L KAE R Q K ----------- LL ARLEKELA E LA A ELAE L Q Q EAE E LEALIAR L EAEA 236
250
....*....|....*.
gi 525313646 685 GGRDSLMSQ A PISNQQ 700
Cdd:COG4942 237 AAAAERTPA A GFAALK 252
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
165-527
5.60e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 40.67
E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 165 TEA LA QRDKRIE EL NQS LA AQ E RLV E Q L SR E KQQ L lhlleeptsmevqpm T E ELLKQ Q K L NSHETTITQQSVSDSHL AEL 244
Cdd:COG4913 609 RAK LA ALEAELA EL EEE LA EA E ERL E A L EA E LDA L --------------- Q E RREAL Q R L AEYSWDEIDVASAEREI AEL 673
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 245 QEKIQQTE A TNKI L QE k L N E MSY EL KCAQ E SSQKQDGTIQNLKET L KSRERET EE LYQVIEGQNDTMAK L REMLHQSQ L G 324
Cdd:COG4913 674 EAELERLD A SSDD L AA - L E E QLE EL EAEL E ELEEELDELKGEIGR L EKELEQA EE ELDELQDRLEAAED L ARLELRAL L E 752
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 325 QLHSSEGTSPAQQQVA l LD L QS alfcsql E I QK L QRVVRQK E RQ L AD A KQ cv Q F VEAAAH E S e QQKE A SWKHNQ E LRKA L 404
Cdd:COG4913 753 ERFAAALGDAVERELR - EN L EE ------- R I DA L RARLNRA E EE L ER A MR -- A F NREWPA E T - ADLD A DLESLP E YLAL L 821
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 405 QQ L Q E E ------------ L QNK S QQLR A WEAE K - YNE IR TQEQN I QH LN H SL SH keqllqefrel LQYRDNSDKT LEA NE 471
Cdd:COG4913 822 DR L E E D glpeyeerfkel L NEN S IEFV A DLLS K l RRA IR EIKER I DP LN D SL KR ----------- IPFGPGRYLR LEA RP 890
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 525313646 472 MLLE --- KL RQ RIHD kav ALER A IDEKFSAL E EKEKE L RQ L -- RL AVR E RDH D LERLRD VL 527
Cdd:COG4913 891 RPDP evr EF RQ ELRA --- VTSG A SLFDEELS E ARFAA L KR L ie RL RSE E EES D RRWRAR VL 948
YhaN
COG4717 Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
165-532
5.68e-03
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain]
Cd Length: 641
Bit Score: 40.52
E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 165 T E AL A QRDKRI EEL NQS L AAQ E RLV E Q L SR E KQQ L LH LL EEPTSMEVQPMT E EL L K -- QQK L NSH E TTITQQSVSDSH L A 242
Cdd:COG4717 87 E E EY A ELQEEL EEL EEE L EEL E AEL E E L RE E LEK L EK LL QLLPLYQELEAL E AE L A el PER L EEL E ERLEELRELEEE L E 166
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 243 EL QEKIQQTEAT - NKI L QEKLNEMSY EL KCAQ E SSQKQDGTIQN L K E T L KSRER E T EEL YQVI E GQNDTMAKLREMLHQS 321
Cdd:COG4717 167 EL EAELAELQEE l EEL L EQLSLATEE EL QDLA E ELEELQQRLAE L E E E L EEAQE E L EEL EEEL E QLENELEAAALEERLK 246
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 322 QLGQ L HSSEGT ----- SPAQQQVA L LDLQSALFCSQ L EIQK L QRVVRQK E RQLADAKQCVQFVEA A AH E S E QQKEASWKH 396
Cdd:COG4717 247 EARL L LLIAAA llall GLGGSLLS L ILTIAGVLFLV L GLLA L LFLLLAR E KASLGKEAEELQALP A LE E L E EEELEELLA 326
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 397 NQE L RKA L Q -------- QLQ EELQ NKSQQLRAW E A E KYN E IRT QE QNIQHLNHSLSHK E Q L LQEFRELLQ Y RDNSDKTL E 468
Cdd:COG4717 327 ALG L PPD L S peellell DRI EELQ ELLREAEEL E E E LQL E ELE QE IAALLAEAGVEDE E E L RAALEQAEE Y QELKEELE E 406
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313646 469 AN E M L L E K L RQRIHDKAVAL E RAID E KFSA LEE KEK EL RQLRLAV RE RDHD LE RLRDV L SSNEA 532
Cdd:COG4717 407 LE E Q L E E L L GELEELLEALD E EELE E ELEE LEE ELE EL EEELEEL RE ELAE LE AELEQ L EEDGE 470
PRK02224
PRK02224 DNA double-strand break repair Rad50 ATPase;
223-693
7.88e-03
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain]
Cd Length: 880
Bit Score: 40.02
E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 223 K LN SH E TTITQ qsv S D SHLAELQ E KIQ Q TEA T NKILQ E K L N E ms Y E LK ca Q E SSQKQDGT I QN L K ET LKSR ERE T EEL YQ 302
Cdd:PRK02224 207 R LN GL E SELAE --- L D EEIERYE E QRE Q ARE T RDEAD E V L E E -- H E ER -- R E ELETLEAE I ED L R ET IAET ERE R EEL AE 279
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 303 VIEGQNDTMAK L R E MLH qsql GQ L HSSEGTSPAQQ qv A LLDLQSA L fcs QLEIQK L QRVVRQKERQLADAKQCVQFVEAA 382
Cdd:PRK02224 280 EVRDLRERLEE L E E ERD ---- DL L AEAGLDDADAE -- A VEARREE L --- EDRDEE L RDRLEECRVAAQAHNEEAESLRED 350
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 383 A HES E QQK E ASWKHNQ EL RKA L QQLQ E ELQNKSQQLRAW E A E ------ KYNEIRTQEQ N IQHLNHS L - SHKEQ L LQEFR E 455
Cdd:PRK02224 351 A DDL E ERA E ELREEAA EL ESE L EEAR E AVEDRREEIEEL E E E ieelre RFGDAPVDLG N AEDFLEE L r EERDE L REREA E 430
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 456 L LQYRDNSDKTL E AN E M LLE KLR ----- Q RIHDKAVA le RA I D E KFSAL EE K E K EL RQ L RLA V R E RDHD LER LR D V ---- 526
Cdd:PRK02224 431 L EATLRTARERV E EA E A LLE AGK cpecg Q PVEGSPHV -- ET I E E DRERV EE L E A EL ED L EEE V E E VEER LER AE D L veae 508
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 527 -- LSSN E ATMQSM E S L LRAKGLEV E QLSTTCQN L QWLKE E M E TKFSRWQK --- E Q E SIIQQLQTSLHDR N KEVED L SATL 601
Cdd:PRK02224 509 dr IERL E ERREDL E E L IAERRETI E EKRERAEE L RERAA E L E AEAEEKRE aaa E A E EEAEEAREEVAEL N SKLAE L KERI 588
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 602 -- L CKLGPGQSE IA E -- ELCQ RL QR K ERM L QD L ------- L SDRNKQVL E H E M E IQG llqsvs T R EQ E SQAAA E KLVQA L 670
Cdd:PRK02224 589 es L ERIRTLLAA IA D ae DEIE RL RE K REA L AE L nderrer L AEKRERKR E L E A E FDE ------ A R IE E AREDK E RAEEY L 662
490 500
....*....|....*....|...
gi 525313646 671 MERNSE L QA LR Q ylg G RD S L MSQ 693
Cdd:PRK02224 663 EQVEEK L DE LR E --- E RD D L QAE 682
PLN02939
PLN02939 transferase, transferring glycosyl groups
377-660
8.73e-03
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain]
Cd Length: 977
Bit Score: 39.89
E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 377 Q FV EA A A HESEQ Q KEA S WKHN Q ELRKA L QQ L QEEL QN ksqqlrawe AEK ---- Y N EI R T Q E qn IQH L NHS L SH KE Q L LQE 452
Cdd:PLN02939 103 Q RD EA I A AIDNE Q QTN S KDGE Q LSDFQ L ED L VGMI QN --------- AEK nill L N QA R L Q A -- LED L EKI L TE KE A L QGK 171
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 453 FRE L --- L QYR D NSD K T ------- L E AN E ML LEKLR QRIHDKAV --- ALERAIDEKFSA L E E KEKE L RQLRLAVR ----- 514
Cdd:PLN02939 172 INI L emr L SET D ARI K L aaqekih V E IL E EQ LEKLR NELLIRGA teg LCVHSLSKELDV L K E ENML L KDDIQFLK aelie 251
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 515 ----- ER DHD LE RL R DV L ssn E A TMQSM ES LLRAKGLE V EQ LS TTCQNLQ W L K - E EMETKFS R WQKEQ E SIIQQ L QTS l H 588
Cdd:PLN02939 252 vaete ER VFK LE KE R SL L --- D A SLREL ES KFIVAQED V SK LS PLQYDCW W E K v E NLQDLLD R ATNQV E KAALV L DQN - Q 327
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 525313646 589 D RNKE V ED L S A T L L - CKLGPGQ S EIA E E L C Q R L QRK E RM LQ DLLSDRNKQVLEHEME I QGLLQSV S TREQ ES Q 660
Cdd:PLN02939 328 D LRDK V DK L E A S L K e ANVSKFS S YKV E L L Q Q K L KLL E ER LQ ASDHEIHSYIQLYQES I KEFQDTL S KLKE ES K 400
PTZ00121
PTZ00121 MAEBL; Provisional
35-698
9.75e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 40.12
E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 35 Q K Y EA S R EDIYK R NI E LKVEV E SLKRELQDK K QHLDKTWADVENLNSQNE AE LRRQF EE --- RQQ E TEHVY E LLE N KIQL 111
Cdd:PTZ00121 1176 K K A EA A R KAEEV R KA E ELRKA E DARKAEAAR K AEEERKAEEARKAEDAKK AE AVKKA EE akk DAE E AKKAE E ERN N EEIR 1255
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 112 LQ EE S R L A kn EA AR MA A LVE AE KECNLELSE K LKGVT K NW E DVPGDQV K PDQYTEAL A QRD K RIE E LNQSLAAQERLVEQ 191
Cdd:PTZ00121 1256 KF EE A R M A -- HF AR RQ A AIK AE EARKADELK K AEEKK K AD E AKKAEEK K KADEAKKK A EEA K KAD E AKKKAEEAKKKADA 1333
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 192 LSREKQQLLHLL E EPTSMEVQPMT E ELLKQQ K LNSH E TTITQQSVSDSHLAELQ E KIQQTEATN K ILQ E K l NEMSY ELK C 271
Cdd:PTZ00121 1334 AKKKAEEAKKAA E AAKAEAEAAAD E AEAAEE K AEAA E KKKEEAKKKADAAKKKA E EKKKADEAK K KAE E D - KKKAD ELK K 1412
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 272 A QESSQ K Q D GTIQNLK E TL K SR E --------------------- RET EE LYQVI E --------- GQNDTMA K LR E MLHQS 321
Cdd:PTZ00121 1413 A AAAKK K A D EAKKKAE E KK K AD E akkkaeeakkadeakkkaeea KKA EE AKKKA E eakkadeak KKAEEAK K AD E AKKKA 1492
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 322 QLGQLHSS E GTSP A QQQVALLDLQS A L fcsql E IQ K LQRVVRQK E RQL AD AKQCVQFVEA A ahe S E QQ K EASW K HNQ E LR 401
Cdd:PTZ00121 1493 EEAKKKAD E AKKA A EAKKKADEAKK A E ----- E AK K ADEAKKAE E AKK AD EAKKAEEKKK A --- D E LK K AEEL K KAE E KK 1564
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 402 KA LQQLQE E LQNKSQQLR A W EA E K YN E I R TQ E QNIQHLNHSLSHK E QL --------- LQ E FRELLQYRDNSDKTLEANEM 472
Cdd:PTZ00121 1565 KA EEAKKA E EDKNMALRK A E EA K K AE E A R IE E VMKLYEEEKKMKA E EA kkaeeakik AE E LKKAEEEKKKVEQLKKKEAE 1644
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 473 LLE K LRQRIHDKAVALER A ID E KFS A L E E K E K -- E LRQLRLAVRERDHD L ER - LRDVLSSN E ATMQSM E SLLR A KG L EVE 549
Cdd:PTZ00121 1645 EKK K AEELKKAEEENKIK A AE E AKK A E E D K K K ae E AKKAEEDEKKAAEA L KK e AEEAKKAE E LKKKEA E EKKK A EE L KKA 1724
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313646 550 QLSTTCQNLQWL KE EM E T K F ---- SRWQK E QESI I QQ L QTSLHDRNK E VEDLSATLL cklgpg QS E IA EE LCQ R LQRKER 625
Cdd:PTZ00121 1725 EEENKIKAEEAK KE AE E D K K kaee AKKDE E EKKK I AH L KKEEEKKAE E IRKEKEAVI ------ EE E LD EE DEK R RMEVDK 1798
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 525313646 626 MLQ D LLS dr N KQVLE h E MEIQ G L L QSVSTR E Q E SQ A AA E KLVQAL M ERN s E LQ A LRQYLGGRDSLMSQAPISN 698
Cdd:PTZ00121 1799 KIK D IFD -- N FANII - E GGKE G N L VINDSK E M E DS A IK E VADSKN M QLE - E AD A FEKHKFNKNNENGEDGNKE 1867
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
