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Conserved domains on  [gi|51092270|ref|NP_001003665|]
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protein stum homolog isoform 1 [Homo sapiens]

Protein Classification

Spec3 domain-containing protein( domain architecture ID 11239287)

Spec3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spec3 pfam15795
Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea ...
 44-127 6.04e-34

Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea urchin, Spec3 is expressed predominantly during ectodermal ciliogenesis.


:

Pssm-ID: 464875  Cd Length: 85  Bit Score: 113.84  E-value: 6.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092270    44 AAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQILT-AIVMVGWIMSIFWGMD 122
Cdd:pfam15795   1 AAIPVLPMPLAIICLILNIILPGLGTIISGFSVLCCGNPRFKDKDKCKTFCINLWVGFLQLFTvPFFLVGWIWSIVWGVI 80


                  ....*
gi 51092270   123 MVILA 127
Cdd:pfam15795  81 FIGLS 85
 
Name Accession Description Interval E-value
Spec3 pfam15795
Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea ...
 44-127 6.04e-34

Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea urchin, Spec3 is expressed predominantly during ectodermal ciliogenesis.


Pssm-ID: 464875  Cd Length: 85  Bit Score: 113.84  E-value: 6.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092270    44 AAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQILT-AIVMVGWIMSIFWGMD 122
Cdd:pfam15795   1 AAIPVLPMPLAIICLILNIILPGLGTIISGFSVLCCGNPRFKDKDKCKTFCINLWVGFLQLFTvPFFLVGWIWSIVWGVI 80


                  ....*
gi 51092270   123 MVILA 127
Cdd:pfam15795  81 FIGLS 85
 
Name Accession Description Interval E-value
Spec3 pfam15795
Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea ...
 44-127 6.04e-34

Ectodermal ciliogenesis protein; Spec3 is a family of eukaryotic membrane proteins. In the sea urchin, Spec3 is expressed predominantly during ectodermal ciliogenesis.


Pssm-ID: 464875  Cd Length: 85  Bit Score: 113.84  E-value: 6.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092270    44 AAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQILT-AIVMVGWIMSIFWGMD 122
Cdd:pfam15795   1 AAIPVLPMPLAIICLILNIILPGLGTIISGFSVLCCGNPRFKDKDKCKTFCINLWVGFLQLFTvPFFLVGWIWSIVWGVI 80


                  ....*
gi 51092270   123 MVILA 127
Cdd:pfam15795  81 FIGLS 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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