|
Name |
Accession |
Description |
Interval |
E-value |
| Spectrin_like |
pfam18373 |
Spectrin like domain; Desmoplakin (DP) is an integral part of desmosomes, where it links ... |
548-625 |
3.10e-36 |
|
Spectrin like domain; Desmoplakin (DP) is an integral part of desmosomes, where it links desmosomal cadherins to the intermediate filaments. The N-terminal region of DP contains a plakin domain common to members of the plakin family. Plakin domains contain multiple copies of spectrin repeats (SRs) pfam00435. Spectrin repeats (SRs) consist of three alpha-helices (A, B, and C) that form an antiparallel triple-helical bundle. This entry describes SR6 which has a divergent structure relative to the other SRs. SR6 shows significant deviations in helices A and B where they are significantly shorter than in other repeats. Structural comparison revealed that SR6 is more similar to other three-helix-bundle proteins, including target of Myb1 and the syntaxin Habc domain, than to other SR proteins. Due to these differences with other spectrin repeats, this region is termed spectrin-like repeat.
Pssm-ID: 465730 Cd Length: 78 Bit Score: 132.34 E-value: 3.10e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 58530842 548 VSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLELHYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVIQ 625
Cdd:pfam18373 1 VSWQYLLKDIQRINSWTISMLKTMRPEEYRQVLKNLETHYQDFLRDSQESEMFGAEDRRQLEREVNSAQQHYQTLLVS 78
|
|
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
447-513 |
1.34e-26 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 104.27 E-value: 1.34e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 58530842 447 QLKPRNpdYRSNKPIILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIP 513
Cdd:pfam17902 1 PLKQRR--SPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
2051-2089 |
3.52e-15 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 71.20 E-value: 3.52e-15
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 2051 LLEAQACTGGIIHPTTGQKLSLQDAVSQGVIDQDMATRL 2089
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1083-1386 |
6.63e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 6.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1083 KRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIED-EKRRRKSVE----------DRFDQQKNDYDQLQKarqcEKE 1151
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAEKaERYKELKAElrelelallvLRLEELREELEELQE----ELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1152 NLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQ 1231
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1232 RLEDELNRAKSTLEAE-TRVKQRLECEKQQIQNDLNQW---KTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEI 1307
Cdd:TIGR02168 330 SKLDELAEELAELEEKlEELKEELESLEAELEELEAELeelESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 58530842 1308 KRIEERCRRKLEDSTRETQSQLETERSRYQREIDKLRQrpygSHRETQTECEWTVDTSKLVFDGLRKKVTAMQLYECQL 1386
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE----ELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1692-1730 |
7.25e-15 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 70.05 E-value: 7.25e-15
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 1692 LLEAQAATGFIVDPVSNLRLPVEEAYKRGLVGIEFKEKL 1730
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1768-1806 |
1.29e-14 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 69.28 E-value: 1.29e-14
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 1768 LLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEELSEIL 1806
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1014-1317 |
3.24e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 3.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1014 YRFLSEMLKSLEdLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSA 1093
Cdd:TIGR02168 215 YKELKAELRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1094 KQNLDKCYGQIKELNEK-------ITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKarqcekenlgwqKLESEKAike 1166
Cdd:TIGR02168 294 ANEISRLEQQKQILRERlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKE------------ELESLEA--- 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1167 keyEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLlvkikvleqdKARLQRLEDELNRAKSTLEA 1246
Cdd:TIGR02168 359 ---ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL----------EARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 58530842 1247 ETRVKQRLECEKQQIQND-----LNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRK 1317
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEeleeeLEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1027-1346 |
5.76e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 5.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1027 LKLKNTK-----IEVLEEELR-----LARDAnsENCNKNKFLDQNLQKYQAEcsQFKAKLASLEELKRQAELDGKSAKQN 1096
Cdd:COG1196 179 RKLEATEenlerLEDILGELErqlepLERQA--EKAERYRELKEELKELEAE--LLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1097 LDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKEnlgwQKLESEKAIKEKEYEIERLRV 1176
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE----RRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1177 LLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLvkIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLEc 1256
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE--AELAEAEEELEELAEELLEALRAAAELAAQLEELEE- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1257 EKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERcrrklEDSTRETQSQLETERSRY 1336
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL-----LAELLEEAALLEAALAEL 482
|
330
....*....|
gi 58530842 1337 QREIDKLRQR 1346
Cdd:COG1196 483 LEELAEAAAR 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1014-1313 |
8.72e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 8.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1014 YRFLSEMLKSLeDLKLKNTKIEVLEEELRLardansencnknkfLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSA 1093
Cdd:COG1196 215 YRELKEELKEL-EAELLLLKLRELEAELEE--------------LEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1094 KQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKEnlgwQKLESEKAIKEKEYEIER 1173
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----ELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1174 LRVLLQEEGTRKREYENELAKASNRIQESKNQctqVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQR 1253
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEE---LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1254 LECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEER 1313
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1005-1310 |
3.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1005 ELLTRSGDYYRFLSEMLKSLEDLKlknTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKR 1084
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLE---AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1085 QAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDqqkndydqlqkarqcekenlgwqklESEKAI 1164
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE-------------------------DLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1165 KEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQdkaRLQRLEDELNRAKSTL 1244
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES---KRSELRRELEELREKL 924
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 58530842 1245 EAETRVKQRLECEKQQIQNDLNQwktQYSRKEEAirkIESEREKSEREKNSLRSEIERLQAEIKRI 1310
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSE---EYSLTLEE---AEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
285-450 |
7.82e-13 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 69.78 E-value: 7.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 285 WINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQI 364
Cdd:cd00176 15 WLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELREL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 365 TKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKErekILEYKRQVQNLVNKSKK 444
Cdd:cd00176 95 AEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEE---LEAHEPRLKSLNELAEE 171
|
....*.
gi 58530842 445 IVQLKP 450
Cdd:cd00176 172 LLEEGH 177
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1525-1563 |
9.27e-13 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 64.27 E-value: 9.27e-13
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 1525 LLEAQIASGGVVDPVNSVFLPKDVALARGLIDRDLYRSL 1563
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1104-1346 |
1.73e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1104 IKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKarqcEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGT 1183
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1184 RKREYENELAKASNRIQESKNQCTQVVQERESLLvkiKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQN 1263
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1264 DLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEE---------RCRRKLEDSTRETQSQLETERS 1334
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNerasleealALLRSELEELSEELRELESKRS 911
|
250
....*....|..
gi 58530842 1335 RYQREIDKLRQR 1346
Cdd:TIGR02168 912 ELRRELEELREK 923
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1449-1487 |
1.99e-12 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 63.12 E-value: 1.99e-12
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 1449 LLEAQAATGGIIDPHRNEKLTVDSAIARDLIDFDDRQQI 1487
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1030-1345 |
4.88e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 4.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1030 KNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNE 1109
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1110 KITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGwqklESEKAIKEKEYEIERLRVLLQEEGTRKREYE 1189
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK----ALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1190 NELAKASNRIQESKNQCTQVVQERESLlvkIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWK 1269
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESL---AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 58530842 1270 TQYSRKEEAIRKieserekSEREKNSLRSEIERLQAEIKRIEERCRRKLEDSTR---ETQSQLETERSRYQREIDKLRQ 1345
Cdd:TIGR02168 908 SKRSELRRELEE-------LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaeALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1002-1315 |
8.21e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 8.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1002 RYIELLTRSGDY--YRFLSEMLKSLEDLKLKNTKIEVLEEELrlardansencnknKFLDQNLQKYQAECSQFKAKLASL 1079
Cdd:TIGR02169 212 RYQALLKEKREYegYELLKEKEALERQKEAIERQLASLEEEL--------------EKLTEEISELEKRLEEIEQLLEEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1080 -EELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLqkARQCEKENLGWQKL 1158
Cdd:TIGR02169 278 nKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL--EREIEEERKRRDKL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1159 ESEkaIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQD----KARLQRLE 1234
Cdd:TIGR02169 356 TEE--YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEladlNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1235 DELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREksereknSLRSEIERLQAEIKRIEERC 1314
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS-------KLQRELAEAEAQARASEERV 506
|
.
gi 58530842 1315 R 1315
Cdd:TIGR02169 507 R 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
936-1343 |
3.98e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 936 EISGKRDKSEEVQKIAELCANSIKDYELQLASYTSGLETLLNIPIKRTMIQSPSGVILQEAADVHARYIELLTRSGDYYR 1015
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1016 FLSEMlKSLEDLK--LKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQ-----AEL 1088
Cdd:PRK03918 367 AKAKK-EELERLKkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgREL 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1089 DGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVE------DRFDQQKNDYDQLqkaRQCEKENLGWQKLESEK 1162
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlkkeSELIKLKELAEQL---KELEEKLKKYNLEELEK 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1163 AIKEKEYEIERLRVL------LQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLV--------KIKVLEQ--- 1225
Cdd:PRK03918 523 KAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFesveeleeRLKELEPfyn 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1226 -------DKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSrkEEAIRKIESEREksereknSLRS 1298
Cdd:PRK03918 603 eylelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYL-------ELSR 673
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 58530842 1299 EIERLQAEIKRIEERcRRKLEDSTRETQSQLEtERSRYQREIDKL 1343
Cdd:PRK03918 674 ELAGLRAELEELEKR-REEIKKTLEKLKEELE-EREKAKKELEKL 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1105-1346 |
9.91e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1105 KELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLG-----WQKLESEKAiKEKEyEIERLRVLLQ 1179
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGeiekeIEQLEQEEE-KLKE-RLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1180 EEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKI---------KVLEQDKARLQRLEDELNRAKSTLEAETRV 1250
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsripeiqAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1251 KQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREksereknSLRSEIERLQAEIKRIEERcRRKLEDSTRETQSQLE 1330
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE-------ELEEELEELEAALRDLESR-LGDLKKERDELEAQLR 899
|
250
....*....|....*....
gi 58530842 1331 TERSRYQR---EIDKLRQR 1346
Cdd:TIGR02169 900 ELERKIEEleaQIEKKRKR 918
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1122-1346 |
1.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1122 KRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAkasnriqE 1201
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-------E 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1202 SKNQCTQVVQERESLLVKIKVLEQD----KARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEE 1277
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKleelRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 58530842 1278 AIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRK------LEDSTRETQSQLETERSRY---QREIDKLRQR 1346
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeleeLESRLEELEEQLETLRSKVaqlELQIASLNNE 401
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
2127-2165 |
3.92e-10 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 56.57 E-value: 3.92e-10
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 2127 FLEFQYLTGGLVDPEVHGRISTEEAIRKGFIDGRAAQRL 2165
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PLEC |
smart00250 |
Plectin repeat; |
2049-2086 |
4.07e-10 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 56.72 E-value: 4.07e-10
10 20 30
....*....|....*....|....*....|....*...
gi 58530842 2049 QRLLEAQACTGGIIHPTTGQKLSLQDAVSQGVIDQDMA 2086
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1058-1313 |
1.10e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1058 LDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKN 1137
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1138 DYDQLQKARQcekenlgwqklesekaikeKEYEIERLRVLLQEEG----TRKREYENELAKAsnriqeSKNQCTQVVQER 1213
Cdd:COG4942 105 ELAELLRALY-------------------RLGRQPPLALLLSPEDfldaVRRLQYLKYLAPA------RREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1214 ESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRvkqrlecEKQQIQNDLNQWKTQYSRKEEAIRKieserekserEK 1293
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQ----------EA 222
|
250 260
....*....|....*....|
gi 58530842 1294 NSLRSEIERLQAEIKRIEER 1313
Cdd:COG4942 223 EELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
811-1412 |
1.14e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 811 LKKIKNDLNLKKSLLATMKTELQKAQQIHSQTSQQYPLYDLDLGKFGEKVTQLTDRWQRIDKQIDfrlwDLEKQIKQLRN 890
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE----ELENELNLLEK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 891 YRDNYQafcKWLYDAKRRQDSLESMKFgdsnTVMRFLNEQKNLHSEISGKRDKSEEVQKIAELCANSIKDYELQLASYTS 970
Cdd:TIGR04523 181 EKLNIQ---KNIDKIKNKLLKLELLLS----NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 971 GLETLLN--IPIKRTM------IQSPSGVILQEAADVHARYIELLT----RSGDYYRFLSEMLKS----LEDLKLK---- 1030
Cdd:TIGR04523 254 QLNQLKDeqNKIKKQLsekqkeLEQNNKKIKELEKQLNQLKSEISDlnnqKEQDWNKELKSELKNqekkLEEIQNQisqn 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1031 -------NTKIEVLEEELRlarDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAE------LDGKSAKQNL 1097
Cdd:TIGR04523 334 nkiisqlNEQISQLKKELT---NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINdleskiQNQEKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1098 DKcygQIK-------ELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENlgwqklesekaIKEKEYE 1170
Cdd:TIGR04523 411 DE---QIKklqqekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ-----------LKVLSRS 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1171 IERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQR----LEDELNRAKSTLEa 1246
Cdd:TIGR04523 477 INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkisdLEDELNKDDFELK- 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1247 etrvKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIE-------RLQAEIKRIEERcRRKLE 1319
Cdd:TIGR04523 556 ----KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEekekkisSLEKELEKAKKE-NEKLS 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1320 DSTRETQS---QLETERSRYQREIDKLRQRPYGSHRETQTECEWTVDTSKLVFDGLRKKVTAMQLYECQLIDKTTLDKLL 1396
Cdd:TIGR04523 631 SIIKNIKSkknKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLE 710
|
650
....*....|....*.
gi 58530842 1397 KGKKSVEEVASEIQPF 1412
Cdd:TIGR04523 711 EKYKEIEKELKKLDEF 726
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1105-1357 |
1.19e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 63.60 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1105 KELNEKITRLTYEIEDEKRRRKSVED--RFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRvllQEEg 1182
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEkaREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR---QEE- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1183 tRKREYE----NELAKASNRIQE---------SKNQctQVVQERESLLvKIKVLEQDKAR-------------------- 1229
Cdd:pfam17380 358 -RKRELErirqEEIAMEISRMRElerlqmerqQKNE--RVRQELEAAR-KVKILEEERQRkiqqqkvemeqiraeqeear 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1230 ---LQRLEDELNRakstlEAEtRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIE-RLQA 1305
Cdd:pfam17380 434 qreVRRLEEERAR-----EME-RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEeRKQA 507
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 58530842 1306 EIKriEERCRRKLEDSTRETQSQLETERSRYQREIDKLRQRPYGSHRETQTE 1357
Cdd:pfam17380 508 MIE--EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQ 557
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
793-1404 |
1.38e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 793 EEETVCLDL--DKVEAYRCGLKKIKNDLNLKKSLLATMKTELQKAQQIHSQTsqqyplyDLDLGKFGEKVTQLTDRWQ-- 868
Cdd:TIGR02168 221 ELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL-------RLEVSELEEEIEELQKELYal 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 869 -----RIDKQI---DFRLWDLEKQIKQLRNYRDNYQafcKWLYDAKRRQDSLESMKFGDSNTVMRFLNEQKNLHSEISGK 940
Cdd:TIGR02168 294 aneisRLEQQKqilRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 941 RDKSEEVQKIAELCANSIKDYELQLASYTSGLETLlnipikRTMIQSpsgviLQEAADVHARYIELLTRSGDyyrfLSEM 1020
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERL------EARLER-----LEDRRERLQQEIEELLKKLE----EAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1021 LKSLEDLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDK- 1099
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNq 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1100 -----CYGQIKEL--------------------------------------NEKITRLTYEIEDEKRRRKSVEDRFDQQK 1136
Cdd:TIGR02168 516 sglsgILGVLSELisvdegyeaaieaalggrlqavvvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1137 NDYDQLQKARQCEKENLGWQK--------------LESEKAIKEKEYEIERLrVLLQEE----------GTRKR-----E 1187
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYRI-VTLDGDlvrpggvitgGSAKTnssilE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1188 YENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAEtrvKQRLECEKQQIQNDLNQ 1267
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1268 WKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCrrkleDSTRETQSQLETERSRYQREIDKLRQRp 1347
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-----KALREALDELRAELTLLNEEAANLRER- 825
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58530842 1348 YGSHRETQTECEWTVDTSKLVFDGLRKKVTAM--QLYECQ-LIDK--TTLDKLLKGKKSVEE 1404
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLaaEIEELEeLIEEleSELEALLNERASLEE 887
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1078-1329 |
2.47e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.01 E-value: 2.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1078 SLEELKRQAELDGKSAKQNLDKCYGQIKELNekitRLTYEIEDEKRRRKSVE------DRFDQQKNDYDQLQKARQceke 1151
Cdd:COG4913 208 DLDDFVREYMLEEPDTFEAADALVEHFDDLE----RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRA---- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1152 nlGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQV-VQERESLLVKIKVLEQDKARL 1230
Cdd:COG4913 280 --ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1231 QRLEDELNRAKSTLEAET-RVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKR 1309
Cdd:COG4913 358 ERRRARLEALLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSN 437
|
250 260
....*....|....*....|...
gi 58530842 1310 IEER---CRRKLEDSTRETQSQL 1329
Cdd:COG4913 438 IPARllaLRDALAEALGLDEAEL 460
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1102-1346 |
2.53e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 62.83 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1102 GQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKE---YEIERLRVLL 1178
Cdd:pfam17380 240 KESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEekaREVERRRKLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 QEEGTRKREYENELAKASNriQEsknqctQVVQERESLLVKIKvLEQDKARLQRLEDElnraKSTLEAE-TRVKQRLECE 1257
Cdd:pfam17380 320 EAEKARQAEMDRQAAIYAE--QE------RMAMERERELERIR-QEERKRELERIRQE----EIAMEISrMRELERLQME 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1258 KQQiqndlnqwKTQYSRKE-EAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDSTRETQSQLETERSRY 1336
Cdd:pfam17380 387 RQQ--------KNERVRQElEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQER 458
|
250
....*....|
gi 58530842 1337 QREIDKLRQR 1346
Cdd:pfam17380 459 QQQVERLRQQ 468
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1103-1317 |
2.72e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1103 QIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQcekenlgwqklESEKAIKEKEYEIERLRVLLQEEG 1182
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-----------ALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1183 TRKREYENELAKASNRIQESKNQCT-QVVQERESLLVKIK-------VLEQDKARLQRLEDELNRAKSTLEAETRVKQRL 1254
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPlALLLSPEDFLDAVRrlqylkyLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1255 ECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRK 1317
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1062-1220 |
3.14e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 59.55 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1062 LQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKN--DY 1139
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1140 DQLQKarqcEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTR----KREYENELAKASNRIQESKNQCTQVVQERES 1215
Cdd:COG1579 92 EALQK----EIESLKRRISDLEDEILELMERIEELEEELAELEAElaelEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*
gi 58530842 1216 LLVKI 1220
Cdd:COG1579 168 LAAKI 172
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
779-1359 |
6.30e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 6.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 779 QTEDMLKVYEARLTEEETVCLDLDKVEAYRcGLKKIKNDLNLKKSLLATMKTELQKAQQIHSqtsqqyplydldlgkfGE 858
Cdd:PTZ00121 1135 KAEDARKAEEARKAEDAKRVEIARKAEDAR-KAEEARKAEDAKKAEAARKAEEVRKAEELRK----------------AE 1197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 859 KVtqltdrwQRIDKQidfRLWDLEKQIKQLRNYRDNYQA-FCKWLYDAKRRQDSLESMKFGDSNTVMRFLNEQKNLHSEI 937
Cdd:PTZ00121 1198 DA-------RKAEAA---RKAEEERKAEEARKAEDAKKAeAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR 1267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 938 SGKRDKSEEVQKIAEL--CANSIKDYELQLASYTSGLETLlnipiKRTMIQSPSGVILQEAADVHARYIELLTRSGDYYR 1015
Cdd:PTZ00121 1268 RQAAIKAEEARKADELkkAEEKKKADEAKKAEEKKKADEA-----KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1016 FLSEMLKSLEDLKLKntKIEVLEEELRLARDANSEncnknkfldqnlQKYQAECSQFKA-KLASLEELKRQAELDGKSAK 1094
Cdd:PTZ00121 1343 KAAEAAKAEAEAAAD--EAEAAEEKAEAAEKKKEE------------AKKKADAAKKKAeEKKKADEAKKKAEEDKKKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1095 QnLDKCYGQIKELNEKITRltyeiEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERL 1174
Cdd:PTZ00121 1409 E-LKKAAAAKKKADEAKKK-----AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1175 RVllQEEGTRKREYENELAKASNRIQESKNQCTQVVQEREsllvKIKVLEQDKARLQRLEDELNRAKSTLEAEtRVKQRL 1254
Cdd:PTZ00121 1483 KK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE----AKKADEAKKAEEAKKADEAKKAEEKKKAD-ELKKAE 1555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1255 ECEKQQIQNDLNQWKTQYSRKEEAIRKIESEReksereknslRSEIERLQAEIKRIEERCRRKLEDSTRETQSQLETERS 1334
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK----------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
570 580
....*....|....*....|....*
gi 58530842 1335 RYQREIDKLRQRPYGSHRETQTECE 1359
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
878-1457 |
9.49e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 9.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 878 LWDLEKQIKQLRNYR---------------DNYQAFCKWLYDakrrQDSLESMKFGDSNT-VMRFLNEqknLHSEISGKR 941
Cdd:pfam15921 165 LEDSNTQIEQLRKMMlshegvlqeirsilvDFEEASGKKIYE----HDSMSTMHFRSLGSaISKILRE---LDTEISYLK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 942 DKSEEVQ-KIAELCANSIKDYELQLASYTSGLETLLN---IPI------------KRTMIQSPSGVILQEAADVHARYIE 1005
Cdd:pfam15921 238 GRIFPVEdQLEALKSESQNKIELLLQQHQDRIEQLISeheVEItgltekassarsQANSIQSQLEIIQEQARNQNSMYMR 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1006 LLTrsgDYYRFLSEMLKSLEDLK-LKNTKIEVLEEELRLARDANSE-NCNKNKF------LDQNLQKYQAECSQFKAKLA 1077
Cdd:pfam15921 318 QLS---DLESTVSQLRSELREAKrMYEDKIEELEKQLVLANSELTEaRTERDQFsqesgnLDDQLQKLLADLHKREKELS 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1078 ------------------SLEELKRqaELDGKSAK-QNLD--------KCYGQIK----------ELNEKITRLTYEIED 1120
Cdd:pfam15921 395 lekeqnkrlwdrdtgnsiTIDHLRR--ELDDRNMEvQRLEallkamksECQGQMErqmaaiqgknESLEKVSSLTAQLES 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1121 EKRRRKSVEDRFDQQKNDYDQLQKArqceKENLGWQKLESEKAIKEKEYEIERLR----VLLQEEGTRKREYENelakas 1196
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESSERT----VSDLTASLQEKERAIEATNAEITKLRsrvdLKLQELQHLKNEGDH------ 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1197 nrIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAEtrvKQRLECEKQQIQNDLNQWKTQYSRKE 1276
Cdd:pfam15921 543 --LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE---KAQLEKEINDRRLELQEFKILKDKKD 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1277 EAIRKIESEREKSEREKNSL-RSEIERLQAeIKRIEERcRRKLEDSTRETQSQLETERSRYQ----------REIDKLRQ 1345
Cdd:pfam15921 618 AKIRELEARVSDLELEKVKLvNAGSERLRA-VKDIKQE-RDQLLNEVKTSRNELNSLSEDYEvlkrnfrnksEEMETTTN 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1346 RPYGSHRETQTECEWTVDTSKLV--FDGLRKKVT-AMQlyecqlidkttlDKLLKGKKSVEEVASEIQpFLRGAGSIAGa 1422
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSMegSDGHAMKVAmGMQ------------KQITAKRGQIDALQSKIQ-FLEEAMTNAN- 761
|
650 660 670
....*....|....*....|....*....|....*
gi 58530842 1423 saspKEKYSLVEAKRKklISPESTVMLLEAQAATG 1457
Cdd:pfam15921 762 ----KEKHFLKEEKNK--LSQELSTVATEKNKMAG 790
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
190-366 |
1.15e-08 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 57.46 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 190 ECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKA---DLREKSAIY---------QLEEEYEN 257
Cdd:cd00176 11 ELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNElgeQLIEEGHPDaeeiqerleELNQRWEE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 258 LLKASFERMDHL---RQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESD 334
Cdd:cd00176 91 LRELAEERRQRLeeaLDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAE 170
|
170 180 190
....*....|....*....|....*....|...
gi 58530842 335 QLVLNQHPAS-DKIEAYMDTLQTQWSWILQITK 366
Cdd:cd00176 171 ELLEEGHPDAdEEIEEKLEELNERWEELLELAE 203
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1018-1345 |
1.31e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1018 SEMLKSLEDLKLKNTKIEVLEEEL-RLARDANSENCNKNKFL------DQNLQKYQAECSQFKAKLASLEELKRQAELDG 1090
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELnKLEKQKKENKKNIDKFLteikkkEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1091 KSAKQNLDKCYGQ----------IKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLES 1160
Cdd:TIGR04523 183 LNIQKNIDKIKNKllklelllsnLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1161 EKA-----------------IKEKEYEIERLRVLLQEEGTRK-----REYENELAKASNRIQESKNQCTQVVQERESLLV 1218
Cdd:TIGR04523 263 NKIkkqlsekqkeleqnnkkIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1219 KIKVLEQDKARL----QRLEDELNRAKSTLEAETRVKQ-------RLECEKQQIQNDLNQWKTQYSRKEEAIRKIESERE 1287
Cdd:TIGR04523 343 QISQLKKELTNSesenSEKQRELEEKQNEIEKLKKENQsykqeikNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1288 KSEREKNSLRSEIERLQAEIKRIEER--CRRKLEDSTRETQSQLETERSRYQREIDKLRQ 1345
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1125-1346 |
1.37e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1125 RKSVEDRFDQQKNDYDQLQKARQcekenlgwqklesekAIKEKEYEIERLRVL------LQEEGTRKREYENELAK---- 1194
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHE---------------ALEDAREQIELLEPIrelaerYAAARERLAELEYLRAAlrlw 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1195 -ASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKstLEAETRVKQRLECEKQQIQNDLNQWKTQYS 1273
Cdd:COG4913 285 fAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI--RGNGGDRLEQLEREIERLERELEERERRRA 362
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1274 RKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLeDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL-AEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
929-1346 |
1.71e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 929 EQKNLHSEISGKRDKSEEVQKI-------AELCANSIKDYELQLASYTSGLETLLN-IPIKRTMIQSPSGVI---LQEAA 997
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEErddllaeAGLDDADAEAVEARREELEDRDEELRDrLEECRVAAQAHNEEAeslREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 998 DVHARYIELLTRSGDyyrFLSEMLKSLEDLKLKNTKIEVLEEELRLAR----DANSENCNKNKFLDQnlqkYQAECSQFK 1073
Cdd:PRK02224 353 DLEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELRerfgDAPVDLGNAEDFLEE----LREERDELR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1074 AKLASLEELKRQAELDGKSAKQNLD--KC--YGQ----------IKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKndy 1139
Cdd:PRK02224 426 EREAELEATLRTARERVEEAEALLEagKCpeCGQpvegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAE--- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1140 dQLQKARQcEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELakasnriQESKNQCTQVVQERESLLVK 1219
Cdd:PRK02224 503 -DLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA-------EEKREAAAEAEEEAEEAREE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1220 IKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLEC--EKQQIQNDLN---------------------------QWKT 1270
Cdd:PRK02224 574 VAELNSKLAELKERIESLERIRTLLAAIADAEDEIERlrEKREALAELNderrerlaekrerkreleaefdearieEARE 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1271 QYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEE-RCRRKLEDSTRET----QSQLETERSRYQREIDKLRQ 1345
Cdd:PRK02224 654 DKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElRERREALENRVEAlealYDEAEELESMYGDLRAELRQ 733
|
.
gi 58530842 1346 R 1346
Cdd:PRK02224 734 R 734
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
993-1346 |
2.10e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 993 LQEAADVHARYIELLTRsgdyyrfLSEMLKSLEDLKLKNTKIEVLEEELRLARDAnSENCNKNKFLDQNLQKYQAECSQF 1072
Cdd:COG4717 80 LKEAEEKEEEYAELQEE-------LEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1073 KAKLASLEELKRQ------------------AELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQ 1134
Cdd:COG4717 152 EERLEELRELEEEleeleaelaelqeeleelLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1135 QKNDYDQLQKARQCEKEN------------------------------------LGWQKLESEKAIKEKEYEIERLRVLL 1178
Cdd:COG4717 232 LENELEAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlglLALLFLLLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 QEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARL--QRLEDE----LNRAKSTLEAETRVKQ 1252
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqlEELEQEiaalLAEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1253 RLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSereknSLRSEIERLQAEIKRIEERcRRKLEDSTRETQSQLETE 1332
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEALDEE-----ELEEELEELEEELEELEEE-LEELREELAELEAELEQL 465
|
410
....*....|....
gi 58530842 1333 RSryQREIDKLRQR 1346
Cdd:COG4717 466 EE--DGELAELLQE 477
|
|
| PLEC |
smart00250 |
Plectin repeat; |
2125-2158 |
2.25e-08 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 51.71 E-value: 2.25e-08
10 20 30
....*....|....*....|....*....|....
gi 58530842 2125 QRFLEFQYLTGGLVDPEVHGRISTEEAIRKGFID 2158
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLID 34
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1021-1345 |
2.42e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1021 LKSLEDLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAEC-------SQFKAKLASLEELKRQAELDGKSA 1093
Cdd:TIGR04523 64 NKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIkndkeqkNKLEVELNKLEKQKKENKKNIDKF 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1094 KQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKaIKEKEYEIER 1173
Cdd:TIGR04523 144 LTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQK-NKSLESQISE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1174 LRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERE----SLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETR 1249
Cdd:TIGR04523 223 LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNkikkQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1250 VKQR------------LECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEercrrK 1317
Cdd:TIGR04523 303 QKEQdwnkelkselknQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK-----K 377
|
330 340
....*....|....*....|....*...
gi 58530842 1318 LEDSTRETQSQLETERSRYQREIDKLRQ 1345
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEK 405
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
949-1346 |
2.83e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 2.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 949 KIAELCANSIKDYELQLASYTSGLETLLN-IPIKRTMIQSPSGVILQEAADVHAryiELLTRSGDYYRFLSEMLKSLEDL 1027
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSsLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1028 KLKNTKIEVLEEELRLARDansencnKNKFLDQNLQKYQAECSQFKAKLASLEelkrqAELDGKsakqnldkcygQIKEL 1107
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKS-------ELKELEARIEELEEDLHKLEEALNDLE-----ARLSHS-----------RIPEI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1108 NEKITrltyEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRvllqeegTRKRE 1187
Cdd:TIGR02169 797 QAELS----KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN-------GKKEE 865
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1188 YENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQdkaRLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQ 1267
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELER---KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1268 WKtQYSRKEEAIRKIESereksereknslrsEIERLQAEIKRIEERCRRKLED--STRETQSQLETERSRYQREIDKLRQ 1345
Cdd:TIGR02169 943 DE-EIPEEELSLEDVQA--------------ELQRVEEEIRALEPVNMLAIQEyeEVLKRLDELKEKRAKLEEERKAILE 1007
|
.
gi 58530842 1346 R 1346
Cdd:TIGR02169 1008 R 1008
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1062-1344 |
6.82e-08 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 57.60 E-value: 6.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1062 LQKYQAECSQFKAKLASLEE-LKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIedeKRRRKSVEDRFDQQKNDYD 1140
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEaANRQREKEKERYKRDREQWERQRRELESRVAELKEEL---RQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1141 QLQKARQcEKENLGWQKLESEKAIKEKEYEIERLrvllqeeGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKi 1220
Cdd:pfam07888 109 SSEELSE-EKDALLAQRAAHEARIRELEEDIKTL-------TQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1221 kvLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKE---EAIRKIESEREKSEREKNSLR 1297
Cdd:pfam07888 180 --LQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEallEELRSLQERLNASERKVEGLG 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58530842 1298 SEIE-------RLQAEIKRIEERCRR---KLEDST---RETQSQLETERSRYQR--EIDKLR 1344
Cdd:pfam07888 258 EELSsmaaqrdRTQAELHQARLQAAQltlQLADASlalREGRARWAQERETLQQsaEADKDR 319
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1344 |
1.19e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1059 DQNLQKYQAEcsqFKAKLASLEE-LKRQAELDG--KSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQ 1135
Cdd:PRK03918 164 YKNLGEVIKE---IKRRIERLEKfIKRTENIEEliKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1136 KNDYDQLQKARQcEKENLGWQKLESEKAIKEKEYEIERLRvllqeegtrkreyenELAKASNRIQESKNQCTQVVQERES 1215
Cdd:PRK03918 241 EELEKELESLEG-SKRKLEEKIRELEERIEELKKEIEELE---------------EKVKELKELKEKAEEYIKLSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1216 LLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNS 1295
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 58530842 1296 LRSEIERLQAEIKRIEERCRRKLEDSTREtQSQLETERSRYQREIDKLR 1344
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITAR-IGELKKEIKELKKAIEELK 432
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1079-1279 |
1.45e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1079 LEELKRQAELDGKSAKQNLDKCYGQIKELNEKIT----------RLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQC 1148
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKeaeekeeeyaELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1149 EKENLGWQKLESEKAIKEKEYEierlrvLLQEEGTRKREYENELAKASNRIQESKNQCTQvvQERESLLVKIKVLEQDKA 1228
Cdd:COG4717 128 LPLYQELEALEAELAELPERLE------ELEERLEELRELEEELEELEAELAELQEELEE--LLEQLSLATEEELQDLAE 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 58530842 1229 RLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAI 1279
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1485-1522 |
1.47e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 49.40 E-value: 1.47e-07
10 20 30
....*....|....*....|....*....|....*...
gi 58530842 1485 QQIYAAEKAITGFDDPFSGKTVSVSEAIKKNLIDRETG 1522
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1449-1484 |
1.78e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 49.02 E-value: 1.78e-07
10 20 30
....*....|....*....|....*....|....*.
gi 58530842 1449 LLEAQAATGGIIDPHRNEKLTVDSAIARDLIDFDDR 1484
Cdd:smart00250 3 LLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1018-1432 |
1.99e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1018 SEMLKSLEDLKLKNTKIEVLEEELRLARDA-NSENCNKnkfldQNLQKYQAECSQFKAKLA-SLEELKRQAELDGKSA-- 1093
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAkKAEEAKK-----KAEEAKKADEAKKKAEEAkKADEAKKKAEEAKKKAde 1501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1094 ---KQNLDKCYGQIKELNEKitRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKA----------------RQCEKENLG 1154
Cdd:PTZ00121 1502 akkAAEAKKKADEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEKKKADELKKAeelkkaeekkkaeeakKAEEDKNMA 1579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1155 WQKLESEKAIKEKEyeIERLRVLLQEEGTRK----REYENELAKA----------------SNRIQESKNQCTQVVQERE 1214
Cdd:PTZ00121 1580 LRKAEEAKKAEEAR--IEEVMKLYEEEKKMKaeeaKKAEEAKIKAeelkkaeeekkkveqlKKKEAEEKKKAEELKKAEE 1657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1215 SLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQnDLNQWKTQYSRKEEAIRKIESEREKSEREKN 1294
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAK 1736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1295 SlRSEIERLQAEIKRIEERCRRKLEDSTRETQSQLETERSRYQREIDK-LRQRPYGSHRETQTECEWTVDTSKLVFDGLR 1373
Cdd:PTZ00121 1737 K-EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 58530842 1374 KKVTAMQlyECQLIDKTTLDKLLKGKKSVEEVASEIQPFLRGAGSIAGASA-----SPKEKYSL 1432
Cdd:PTZ00121 1816 EGNLVIN--DSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGnkeadFNKEKDLK 1877
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1869-1897 |
2.16e-07 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 48.86 E-value: 2.16e-07
10 20
....*....|....*....|....*....
gi 58530842 1869 IVDPETNKEMSVQEAYKKGLIDYETFKEL 1897
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1109-1369 |
3.25e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1109 EKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQK-ARQCEK-ENLGWqkleSEKAIKEKEYEIERLRVLLQEEgtrkR 1186
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQErREALQRlAEYSW----DEIDVASAEREIAELEAELERL----D 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1187 EYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQ------- 1259
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaalgd 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1260 --------QIQNDLNQWKTQYSRKEEAIRKIESE-----REKSEREKNSLRS--EIERLQAEIKRI-----EERCRRKLE 1319
Cdd:COG4913 762 averelreNLEERIDALRARLNRAEEELERAMRAfnrewPAETADLDADLESlpEYLALLDRLEEDglpeyEERFKELLN 841
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 58530842 1320 DSTRET----QSQLETERSRYQREIDK----LRQRPYGSHRETQTECEWTVDTSKLVF 1369
Cdd:COG4913 842 ENSIEFvadlLSKLRRAIREIKERIDPlndsLKRIPFGPGRYLRLEARPRPDPEVREF 899
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1692-1726 |
4.29e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 48.25 E-value: 4.29e-07
10 20 30
....*....|....*....|....*....|....*
gi 58530842 1692 LLEAQAATGFIVDPVSNLRLPVEEAYKRGLVGIEF 1726
Cdd:smart00250 3 LLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPET 37
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1093-1313 |
7.72e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 7.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1093 AKQNLDKCYGQIKELNEKitrltyEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQcEKENLgwqklesEKAIKEKEYEIE 1172
Cdd:COG4717 54 EADELFKPQGRKPELNLK------ELKELEEELKEAEEKEEEYAELQEELEELEE-ELEEL-------EAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1173 RLRVLLQeegtrKREYENELAKASNRIQEsknqctqvVQER-ESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAEtrvk 1251
Cdd:COG4717 120 KLEKLLQ-----LLPLYQELEALEAELAE--------LPERlEELEERLEELRELEEELEELEAELAELQEELEEL---- 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58530842 1252 qrLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEER 1313
Cdd:COG4717 183 --LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1056-1345 |
8.52e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 54.19 E-value: 8.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1056 KFLDQNLQKYQAECSQFKAKLASLEELKRQ-AELDGKSAKQNLDKcygqIKELNEKITRLTYEIEDEKRR-RKSVEDRFD 1133
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQnTDLRLEKLGENAES----SKRLNENANNLIKQFENTKEKiAEYTKSIDI 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1134 QQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAkASNRIQESKNQCTQVVQER 1213
Cdd:COG5185 308 KKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIV-GEVELSKSSEELDSFKDTI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1214 ESLLVKIkvleqdkarLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREK 1293
Cdd:COG5185 387 ESTKESL---------DEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREA 457
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58530842 1294 NSLRSE---------IERLQAEIKRIEERcRRKLEDSTRETQSQLETERSRYQREIDKLRQ 1345
Cdd:COG5185 458 DEESQSrleeaydeiNRSVRSKKEDLNEE-LTQIESRVSTLKATLEKLRAKLERQLEGVRS 517
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1010-1346 |
9.61e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.41 E-value: 9.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1010 SGDYYRFLSEMLKSLEDLKLKNTKievLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLAS----------- 1078
Cdd:pfam01576 217 STDLQEQIAELQAQIAELRAQLAK---KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraarnkaekq 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1079 -------LEELKRQAE--LDGKSAKQNLDKCYGQikelneKITRLTYEIEDEKR---------RRK------SVEDRFDQ 1134
Cdd:pfam01576 294 rrdlgeeLEALKTELEdtLDTTAAQQELRSKREQ------EVTELKKALEEETRsheaqlqemRQKhtqaleELTEQLEQ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1135 QKNDYDQLQKARQC-EKENLGWQ---------KLESEKAIKEKEYEIERLRVLLQEeGTRKReyeNELAKASNRIQESKN 1204
Cdd:pfam01576 368 AKRNKANLEKAKQAlESENAELQaelrtlqqaKQDSEHKRKKLEGQLQELQARLSE-SERQR---AELAEKLSKLQSELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1205 QCTQVVQERESLLVKikvLEQDkarLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRkies 1284
Cdd:pfam01576 444 SVSSLLNEAEGKNIK---LSKD---VSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR---- 513
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58530842 1285 ereksereknSLRSEIERLQAEIKRIeercRRKLEDSTrETQSQLETERSRYQREIDKLRQR 1346
Cdd:pfam01576 514 ----------NVERQLSTLQAQLSDM----KKKLEEDA-GTLEALEEGKKRLQRELEALTQQ 560
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
671-1260 |
9.63e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 9.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 671 ELQKIRRQIEhcEGRMTLKNLPLADQGSSHHITVKINELKSVQNDSQAIAEVLNQLKDMLA-NFRGSEKYCYLQNEVFGL 749
Cdd:pfam05483 107 KLQENRKIIE--AQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCArSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 750 FQKLENingvtdgylNSLCTVRALLQAILQTEDmlkvyeARLTEEETVCLDLDKVEAYRCGLKKIKNDLNLKKSLLATMK 829
Cdd:pfam05483 185 YMDLNN---------NIEKMILAFEELRVQAEN------ARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQI 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 830 TE-----------LQKAQQIHSQTSQQYPLYDLDLGKFGEKVTQLTDRWQRIDKQidfrlwdLEKQIKQLRNYRDNYQAF 898
Cdd:pfam05483 250 TEkenkmkdltflLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMS-------LQRSMSTQKALEEDLQIA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 899 CKWLY----DAKRRQDSLESMKFGDSNTVMRF-----------LNEQKNLHSEISGKR-------DKSEEVQKIAELCAN 956
Cdd:pfam05483 323 TKTICqlteEKEAQMEELNKAKAAHSFVVTEFeattcsleellRTEQQRLEKNEDQLKiitmelqKKSSELEEMTKFKNN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 957 siKDYELQ-LASYTSGLETLLNIPIKRTMI--------QSPSGVILQEAADVHARYIEL--LTRSGDYY-RFLSEMLKSL 1024
Cdd:pfam05483 403 --KEVELEeLKKILAEDEKLLDEKKQFEKIaeelkgkeQELIFLLQAREKEIHDLEIQLtaIKTSEEHYlKEVEDLKTEL 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1025 EDLKLKNTKI-----EVLEEELRLARDAN---------SENCNKNKFLDQNLQK----YQAECSQFKAKLASL-EELKRQ 1085
Cdd:pfam05483 481 EKEKLKNIELtahcdKLLLENKELTQEASdmtlelkkhQEDIINCKKQEERMLKqienLEEKEMNLRDELESVrEEFIQK 560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1086 ----------AELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKR------------RRKSVEDrfDQQKNDYD--- 1140
Cdd:pfam05483 561 gdevkckldkSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKnieelhqenkalKKKGSAE--NKQLNAYEikv 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1141 -----QLQKARQCEKENLG-WQKLESEKAIKEKEY--EIERLRVLLQEEGTRKREY----ENELAKASNRIQESKNQCTQ 1208
Cdd:pfam05483 639 nklelELASAKQKFEEIIDnYQKEIEDKKISEEKLleEVEKAKAIADEAVKLQKEIdkrcQHKIAEMVALMEKHKHQYDK 718
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1209 VVQERESLLVKIKVLEQDKA--------RLQRLEDELNRAKSTLEAETRVKQRLECEKQQ 1260
Cdd:pfam05483 719 IIEERDSELGLYKNKEQEQSsakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1104-1359 |
1.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1104 IKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKarqcekenlgwqklESEKAIKEKEyeierlrvlLQEEgt 1183
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR--------------EREKAERYQA---------LLKE-- 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1184 rKREYE-NELAKASNRIQESKNQCTQVVQEREsllvkiKVLEQDKARLQRLEDELNRAKSTL-EAETRVKQRLECEKQQI 1261
Cdd:TIGR02169 220 -KREYEgYELLKEKEALERQKEAIERQLASLE------EELEKLTEEISELEKRLEEIEQLLeELNKKIKDLGEEEQLRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1262 QNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERC------RRKLEDSTRETQSQLETERSR 1335
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeeerkrRDKLTEEYAELKEELEDLRAE 372
|
250 260
....*....|....*....|....
gi 58530842 1336 YQrEIDKLRQRPYGSHRETQTECE 1359
Cdd:TIGR02169 373 LE-EVDKEFAETRDELKDYREKLE 395
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1652-1689 |
1.10e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 47.09 E-value: 1.10e-06
10 20 30
....*....|....*....|....*....|....*...
gi 58530842 1652 KDFLQGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTA 1689
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1170-1328 |
1.18e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1170 EIERLRVLLQEEGTRKREY---ENELAKASNRIQESKNQCTQVVQERESLLVKIKV------LEQDKARLQRLEDELNRA 1240
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYaelQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqeLEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1241 KSTLEAETRVKQRLECEKQQI---QNDLNQWKTQYS-RKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRR 1316
Cdd:COG4717 152 EERLEELRELEEELEELEAELaelQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170
....*....|..
gi 58530842 1317 KLEDSTRETQSQ 1328
Cdd:COG4717 232 LENELEAAALEE 243
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1039-1262 |
1.23e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.03 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1039 EELRLARDansENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELD-------------GKSAKQNlDKcygqiK 1105
Cdd:pfam01576 815 EEARASRD---EILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQErdeladeiasgasGKSALQD-EK-----R 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1106 ELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLgwQKLESekAIKEKEYEIERLRVLLQE-EGTR 1184
Cdd:pfam01576 886 RLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTS--QKSES--ARQQLERQNKELKAKLQEmEGTV 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1185 KREYENELAKASNRIQESKNQCTQVVQERESllvKIKVLEQDKARLQRL----EDELNRAKSTLEAETRVKQRLECEKQQ 1260
Cdd:pfam01576 962 KSKFKSSIAALEAKIAQLEEQLEQESRERQA---ANKLVRRTEKKLKEVllqvEDERRHADQYKDQAEKGNSRMKQLKRQ 1038
|
..
gi 58530842 1261 IQ 1262
Cdd:pfam01576 1039 LE 1040
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
659-1313 |
1.58e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 659 RENDKQETWMlmelQKIRRQIEHCEGRMTLKNLPLADQGSshhitvKINELKSVQNDSQAiaeVLNQLKDMLANF-RGSE 737
Cdd:pfam15921 135 RESQSQEDLR----NQLQNTVHELEAAKCLKEDMLEDSNT------QIEQLRKMMLSHEG---VLQEIRSILVDFeEASG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 738 KYCYLQNEVFGLfqKLENINGVTDGYLNSLCTVRALLQA-ILQTEDMLKVYEARLTEEETVCLDL--DKVEAYRCGLKKI 814
Cdd:pfam15921 202 KKIYEHDSMSTM--HFRSLGSAISKILRELDTEISYLKGrIFPVEDQLEALKSESQNKIELLLQQhqDRIEQLISEHEVE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 815 KNDLNLKKSLLATMKTELQKAQQI-HSQTSQQYPLYDLDLGKFGEKVTQLTDRWQRIDKQIDFRLWDLEKQI-------K 886
Cdd:pfam15921 280 ITGLTEKASSARSQANSIQSQLEIiQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanselT 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 887 QLRNYRDNYQA--------FCKWLYDAKRRQDSLESMK----------FGDSNTVmrflneqKNLHSEISgkrDKSEEVQ 948
Cdd:pfam15921 360 EARTERDQFSQesgnlddqLQKLLADLHKREKELSLEKeqnkrlwdrdTGNSITI-------DHLRRELD---DRNMEVQ 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 949 KIAEL-------CANSIkdyELQLASYTSGLETLLNIPIKRTMIQSPSGVILQEAADVHARYIELLTRSgdyyRFLSEML 1021
Cdd:pfam15921 430 RLEALlkamkseCQGQM---ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSE----RTVSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1022 KSLEDlklKNTKIEVLEEE---LRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLAS----LEELKRQAEldgksak 1094
Cdd:pfam15921 503 ASLQE---KERAIEATNAEitkLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEkdkvIEILRQQIE------- 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1095 qNLDKCYGQ----IKELNEKITRLTYEIED---EKRRRKSVEDRFDQQKNDYDQLQKARQCEKE---NLGWQKLESEKAI 1164
Cdd:pfam15921 573 -NMTQLVGQhgrtAGAMQVEKAQLEKEINDrrlELQEFKILKDKKDAKIRELEARVSDLELEKVklvNAGSERLRAVKDI 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1165 KEkeyeiERLRVLLQEEGTRkreyeNELAKASNRIQESKNQCTQVVQERESLLVKIKVleQDKARLQRLEDELNRAKS-- 1242
Cdd:pfam15921 652 KQ-----ERDQLLNEVKTSR-----NELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM--QLKSAQSELEQTRNTLKSme 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1243 -----TLEAETRVKQRLECEKQQIqnDLNQWKTQY-------SRKE-----EAIRKIESEREKSEREKNSLRSEIERLQA 1305
Cdd:pfam15921 720 gsdghAMKVAMGMQKQITAKRGQI--DALQSKIQFleeamtnANKEkhflkEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
....*...
gi 58530842 1306 EIKRIEER 1313
Cdd:pfam15921 798 QERRLKEK 805
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1028-1346 |
1.62e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1028 KLKNTKIEVLEEELRLARDANSENcnknKFLDQNLQKYQAECSQFKAKLASLEElkrqaELDGKSAKQNLDKCYGQIKEL 1107
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEY----AELQEELEELEEELEELEAELEELRE-----ELEKLEKLLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1108 NEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKRE 1187
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1188 YENELAKASNRIQESKNQCT-----QVVQERESLLV---KIKVLEQDKARLQRLEDE------------------LNRAK 1241
Cdd:COG4717 218 AQEELEELEEELEQLENELEaaaleERLKEARLLLLiaaALLALLGLGGSLLSLILTiagvlflvlgllallfllLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1242 STLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERL--QAEIKRIEERCRRKLE 1319
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeELQLEELEQEIAALLA 377
|
330 340
....*....|....*....|....*..
gi 58530842 1320 DSTRETQSQLEtERSRYQREIDKLRQR 1346
Cdd:COG4717 378 EAGVEDEEELR-AALEQAEEYQELKEE 403
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
992-1240 |
1.77e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 992 ILQEAADVHARYIELLTRsgdyYRFLSEMLKSLEDLKLKnTKIEVLEEELRLardansencnknkfLDQNLQKYQAECSQ 1071
Cdd:COG4913 253 LLEPIRELAERYAAARER----LAELEYLRAALRLWFAQ-RRLELLEAELEE--------------LRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1072 FKAKLASLEELKRQAELdgksAKQNLDkcYGQIKELNEKITRLtyeiEDEKRRRKSVEDRFDQQkndydqlqkARQceke 1151
Cdd:COG4913 314 LEARLDALREELDELEA----QIRGNG--GDRLEQLEREIERL----ERELEERERRRARLEAL---------LAA---- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1152 nLGWQKLESEKAIKEkeyEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEqdkARLQ 1231
Cdd:COG4913 371 -LGLPLPASAEEFAA---LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP---ARLL 443
|
....*....
gi 58530842 1232 RLEDELNRA 1240
Cdd:COG4913 444 ALRDALAEA 452
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1078-1404 |
1.96e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1078 SLEELKRQAELDGKSAKqnLDKCYGQIKE-LNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQ 1156
Cdd:TIGR00618 182 ALMEFAKKKSLHGKAEL--LTLRSQLLTLcTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1157 KLESEKAIKEKEYEIERLRVLLQEEgtrkreyENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDE 1236
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQE-------RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1237 LNRAKSTLEAETRVKQRL--ECEKQQIQNDLNQ-WKTQYSRK---EEAIRKIESEREKSEREKNSLRSEIERLQAEIKRI 1310
Cdd:TIGR00618 333 HVKQQSSIEEQRRLLQTLhsQEIHIRDAHEVATsIREISCQQhtlTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1311 EERcrrkledSTRETQSQLETERSRYQREIDKLRQRPYGSHRETQTECEwtvdtsKLVFDGLRKKVTAMQLYECQLIDKT 1390
Cdd:TIGR00618 413 DTR-------TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE------KLEKIHLQESAQSLKEREQQLQTKE 479
|
330
....*....|....
gi 58530842 1391 TLDKLLKGKKSVEE 1404
Cdd:TIGR00618 480 QIHLQETRKKAVVL 493
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
770-1245 |
2.26e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 770 VRALLQAILQTEDMLKVYEARLTEEETVCLDLD----KVEAYRcGLKKIKNDLNLKKS----LLATMKTELQKAQQIHSQ 841
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKelkeKAEEYI-KLSEFYEEYLDELReiekRLSRLEEEINGIEERIKE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 842 TSQQyplyDLDLGKFGEKVTQLTDRWQRIDKqiDFRLWDLEKQIK-QLRNYRDNYQafCKWLYDAKRRQDSLESMKFGDS 920
Cdd:PRK03918 333 LEEK----EERLEELKKKLKELEKRLEELEE--RHELYEEAKAKKeELERLKKRLT--GLTPEKLEKELEELEKAKEEIE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 921 NTVMRFLNEQKNLHSEISGKRDKSEEVQK---IAELCANSIKDYELQ--LASYTSGLETLLNIPIKRTMIQSPSGVILQE 995
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 996 AADVHARYIELLTrsgdyYRFLSEMLKSLEDlKLKNTKIEVLEEELRLARDANSEnCNKNKFLDQNLQKYQAECSQFKAK 1075
Cdd:PRK03918 485 LEKVLKKESELIK-----LKELAEQLKELEE-KLKKYNLEELEKKAEEYEKLKEK-LIKLKGEIKSLKKELEKLEELKKK 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1076 LASLEELKRQAELDGKSAKQNL-DKCYGQIKELNEKITRLTyEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLG 1154
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELeELGFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1155 wqklESEKAIKEKEYEIERLRVLLQEEGTRK-----REYENELAKASNRIQESKNQCTQV----------VQERESLLVK 1219
Cdd:PRK03918 637 ----ETEKRLEELRKELEELEKKYSEEEYEElreeyLELSRELAGLRAELEELEKRREEIkktleklkeeLEEREKAKKE 712
|
490 500
....*....|....*....|....*.
gi 58530842 1220 IKVLEQDKARLQRLEDELNRAKSTLE 1245
Cdd:PRK03918 713 LEKLEKALERVEELREKVKKYKALLK 738
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1039-1346 |
2.43e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1039 EELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLeelkrqaELDGKSAKqnldkcygQIKELNEKITrltyEI 1118
Cdd:COG3096 788 EELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAV-------AFAPDPEA--------ELAALRQRRS----EL 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1119 EDEKRRRKSVEDRFDQQkndYDQLQKARQcekenlGWQKLESEKAIKEKEYEIERLRVLlqeegtrkREYENELAKASNR 1198
Cdd:COG3096 849 ERELAQHRAQEQQLRQQ---LDQLKEQLQ------LLNKLLPQANLLADETLADRLEEL--------REELDAAQEAQAF 911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1199 IQESKNQCTQVvqerESLLVkikVLEQD-------KARLQRLEDELNRAKSTLEAETRVKQRLE-----------CEKQ- 1259
Cdd:COG3096 912 IQQHGKALAQL----EPLVA---VLQSDpeqfeqlQADYLQAKEQQRRLKQQIFALSEVVQRRPhfsyedavgllGENSd 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1260 ---QIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRS-------EIERLQAEIKRI--------EERC---RRKL 1318
Cdd:COG3096 985 lneKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSsrdakqqTLQELEQELEELgvqadaeaEERArirRDEL 1064
|
330 340 350
....*....|....*....|....*....|.
gi 58530842 1319 ED---STRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG3096 1065 HEelsQNRSRRSQLEKQLTRCEAEMDSLQKR 1095
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1030-1342 |
2.67e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1030 KNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEelKRQAELDGKSAKQNldkcyGQIKELNE 1109
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE--QQIKDLNDKLKKNK-----DKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1110 KITRLTYEIEDEKrrrksveDRFDQQKNDYDQLQKARQCEKENLGWQKLEsekaIKEKEYEIERLRVLLQEEGTRKREYE 1189
Cdd:TIGR04523 104 DLSKINSEIKNDK-------EQKNKLEVELNKLEKQKKENKKNIDKFLTE----IKKKEKELEKLNNKYNDLKKQKEELE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1190 NELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTleaetrvKQRLECEKQQIQNDLNQWK 1269
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ-------NNQLKDNIEKKQQEINEKT 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1270 TQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKrieercrrKLEDSTRETQSQLETERSRYQREIDK 1342
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK--------ELEKQLNQLKSEISDLNNQKEQDWNK 310
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1766-1801 |
4.13e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 45.17 E-value: 4.13e-06
10 20 30
....*....|....*....|....*....|....*.
gi 58530842 1766 IRLLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEE 1801
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPE 36
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1038-1343 |
4.36e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.10 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1038 EEELRLARDAnsENCNKNKFLDQNLQKYQAECSQFKAKLAS-LEELKRQAElDGKSAKQNLDKCY----GQIKELNEKIT 1112
Cdd:pfam01576 318 QQELRSKREQ--EVTELKKALEEETRSHEAQLQEMRQKHTQaLEELTEQLE-QAKRNKANLEKAKqaleSENAELQAELR 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1113 RLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLgwQKLESEkaikekeyeIERLRVLLQEEGTRKREYENEL 1192
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKL--SKLQSE---------LESVSSLLNEAEGKNIKLSKDV 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1193 AKASNRIQESKNQCTQVVQERESLlvkikvleqdKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQY 1272
Cdd:pfam01576 464 SSLESQLQDTQELLQEETRQKLNL----------STRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 58530842 1273 SRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIE---ERCRRKLEDSTRE--TQSQLETERSRYQREIDKL 1343
Cdd:pfam01576 534 EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEktkNRLQQELDDLLVDldHQRQLVSNLEKKQKKFDQM 609
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
707-1317 |
4.50e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.21 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 707 NELKSVQND----SQAIAEVLNQLKDMLANF-RGSEKYCYLQNEVFGLFQKLENINGVTD---GYLNSLCTVRALLQAIL 778
Cdd:PRK01156 190 EKLKSSNLEleniKKQIADDEKSHSITLKEIeRLSIEYNNAMDDYNNLKSALNELSSLEDmknRYESEIKTAESDLSMEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 779 QTEDMLKVYEARLTEEETvcldlDKVEAYR---CGLKKIKNDLNLKKSLLATMKTELQKAQQIHSQTSqqyplydlDLGK 855
Cdd:PRK01156 270 EKNNYYKELEERHMKIIN-----DPVYKNRnyiNDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS--------VLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 856 fgekvtqltDRWQRIDKQIdfRLWDLEKQIKQLRNYRDNYQAFCKwlydakrrqdSLESMKFGDSNtvmrFLNEQKNLHS 935
Cdd:PRK01156 337 ---------DYNDYIKKKS--RYDDLNNQILELEGYEMDYNSYLK----------SIESLKKKIEE----YSKNIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 936 EISGKRDKS----EEVQKIAELCANSIKDYELQLASytsgletlLNIPIkRTMIQSpsgvilqeaadvharyIELLTRSg 1011
Cdd:PRK01156 392 FISEILKIQeidpDAIKKELNEINVKLQDISSKVSS--------LNQRI-RALREN----------------LDELSRN- 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1012 dyyrflSEMLKSLEDLKLKNTKIEvlEEELRLARDANSENCNKnkfLDQNLQKYQAECSQFKAKLASLEelKRQAELDGK 1091
Cdd:PRK01156 446 ------MEMLNGQSVCPVCGTTLG--EEKSNHIINHYNEKKSR---LEEKIREIEIEVKDIDEKIVDLK--KRKEYLESE 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1092 SAKQNLDKcYGQIKELNEKITrltyEIEDEKRRRKSVEDRFDQQKNDYDQLqKARQCEKENLGWQKLESEKAIkekeYEI 1171
Cdd:PRK01156 513 EINKSINE-YNKIESARADLE----DIKIKINELKDKHDKYEEIKNRYKSL-KLEDLDSKRTSWLNALAVISL----IDI 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1172 ERLRvllqeegTRKREYENELAKASNRIQE-----------SKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRA 1240
Cdd:PRK01156 583 ETNR-------SRSNEIKKQLNDLESRLQEieigfpddksyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNY 655
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 58530842 1241 KStleaETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRK 1317
Cdd:PRK01156 656 KK----QIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1184-1346 |
4.96e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1184 RKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRvkqRLECEKQQIQN 1263
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA---ELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1264 DLNQWKTQYSRK----------------------EEAIRK---IESEREKSEREKNSLRSEIERLQAEIKRIEERCRRK- 1317
Cdd:COG4942 98 ELEAQKEELAELlralyrlgrqpplalllspedfLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELe 177
|
170 180 190
....*....|....*....|....*....|
gi 58530842 1318 -LEDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG4942 178 aLLAELEEERAALEALKAERQKLLARLEKE 207
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1864-1894 |
5.33e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 45.17 E-value: 5.33e-06
10 20 30
....*....|....*....|....*....|.
gi 58530842 1864 KRRVVIVDPETNKEMSVQEAYKKGLIDYETF 1894
Cdd:smart00250 8 SAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1070-1306 |
5.64e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 5.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1070 SQFKAKLASLEELKRQAEldgkSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQkarqce 1149
Cdd:COG3883 16 PQIQAKQKELSELQAELE----AAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERR------ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1150 kENLGwqklESEKAIKEKEYEIERLRVLLQEEGT----RKREYENELAKASNRIQEsknqctQVVQERESLLVKIKVLEQ 1225
Cdd:COG3883 86 -EELG----ERARALYRSGGSVSYLDVLLGSESFsdflDRLSALSKIADADADLLE------ELKADKAELEAKKAELEA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1226 DKARLQRLEDELNRAKSTLEAE----TRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIE 1301
Cdd:COG3883 155 KLAELEALKAELEAAKAELEAQqaeqEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
....*
gi 58530842 1302 RLQAE 1306
Cdd:COG3883 235 AAAAA 239
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1162-1346 |
5.85e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1162 KAIKEKEYEiERLRVLLQEEGTRKREYENELAKASNRIQESKNQ---CTQVVQERESLLVKIKVLEQDKARLQRLEDELN 1238
Cdd:COG4717 44 RAMLLERLE-KEADELFKPQGRKPELNLKELKELEEELKEAEEKeeeYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1239 RAKSTLEAETRVKQrLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKL 1318
Cdd:COG4717 123 KLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180
....*....|....*....|....*...
gi 58530842 1319 EDStRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG4717 202 EEL-QQRLAELEEELEEAQEELEELEEE 228
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1028-1324 |
7.73e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1028 KLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKEL 1107
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1108 NEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKA---RQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTR 1184
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKElkkEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1185 KREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLeqdKARLQRLEDELNRAKSTLEAETRVKQRLEcEKQQIQND 1264
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL---LELARQLEDLLKEEKKEELEILEEEEESI-ELKQGKLT 447
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1265 LNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDSTRE 1324
Cdd:pfam02463 448 EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1524-1560 |
7.97e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 44.40 E-value: 7.97e-06
10 20 30
....*....|....*....|....*....|....*..
gi 58530842 1524 RLLEAQIASGGVVDPVNSVFLPKDVALARGLIDRDLY 1560
Cdd:smart00250 2 RLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
671-1310 |
8.01e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 8.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 671 ELQKIRRQIehcegrmtlKNLplaDQGSSHHItvkiNELKSVQNDSQaiaEVLNQLKDMLANFRGSEKYCYLQNEVFGLF 750
Cdd:TIGR01612 1112 EINKIKDDI---------KNL---DQKIDHHI----KALEEIKKKSE---NYIDEIKAQINDLEDVADKAISNDDPEEIE 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 751 QKLENINGVTDGYLNSLCTVRALLQAIlqtedmlkvyearlteeetvcldlDKVEAYRCGLKKIKN-DLNLKKSL--LAT 827
Cdd:TIGR01612 1173 KKIENIVTKIDKKKNIYDEIKKLLNEI------------------------AEIEKDKTSLEEVKGiNLSYGKNLgkLFL 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 828 MKTELQKAQQIHSQTSQQYPLYDLDLGKfgeKVTQLTDRWQRIDKQIDFRLWDLEKQIKQLRNYRDNYQAFCKWLYDAKR 907
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIK---EKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIRE 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 908 R-----QDSLESMKFGD-SNTVMRFLNEQKNLHSEISGKRDKSEEVQKIAELcaNSIKDYELQLASYTSGLETLlNIPIK 981
Cdd:TIGR01612 1306 KslkiiEDFSEESDINDiKKELQKNLLDAQKHNSDINLYLNEIANIYNILKL--NKIKKIIDEVKEYTKEIEEN-NKNIK 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 982 RTMIQSPSgVILQEAADVHARYIELLTRSGDYYRFLSEMLKsledlKLKNTKIEVLEEELRL-ARDANSENCNKNKFLDQ 1060
Cdd:TIGR01612 1383 DELDKSEK-LIKKIKDDINLEECKSKIESTLDDKDIDECIK-----KIKELKNHILSEESNIdTYFKNADENNENVLLLF 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1061 NLQKYQAECSQFKAKLA----------SLEELKRQAElDGKSAKQNLDKCYGQI---KELNEKITRLTYEIEDeKRRRKS 1127
Cdd:TIGR01612 1457 KNIEMADNKSQHILKIKkdnatndhdfNINELKEHID-KSKGCKDEADKNAKAIeknKELFEQYKKDVTELLN-KYSALA 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1128 VEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEkeyeIERLRVLLQEEGTRKRE--------------YENELA 1193
Cdd:TIGR01612 1535 IKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKE----IKKEKFRIEDDAAKNDKsnkaaidiqlslenFENKFL 1610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1194 KASNrIQESKNQCtqvVQERESLLVKIKVLEQD--KARLQRLEDELNRAKSTLEAETRVKQRLECEKQQ----------I 1261
Cdd:TIGR01612 1611 KISD-IKKKINDC---LKETESIEKKISSFSIDsqDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKEldeldseiekI 1686
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 58530842 1262 QNDLNQWKTQYSrkeeaIRKIESEREKSEREKNSLRSEIERLQAEIKRI 1310
Cdd:TIGR01612 1687 EIDVDQHKKNYE-----IGIIEKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1729-1765 |
8.12e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 44.40 E-value: 8.12e-06
10 20 30
....*....|....*....|....*....|....*..
gi 58530842 1729 KLLSAERAVTGYNDPETGNIISLFQAMNKELIEKGHG 1765
Cdd:smart00250 2 RLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1156-1346 |
9.52e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 9.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1156 QKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQdkaRLQRLED 1235
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1236 ELNRAKSTLEAETRVKQRLE-----------CEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQ 1304
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 58530842 1305 AEIKRIEERCRR--KLEDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG4942 178 ALLAELEEERAAleALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
811-1331 |
9.76e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 811 LKKIKNDLNLKKSLLATMKTELQKAQQIHSQTSQQYPLYDLDLGKFGEKVTQLTDRwQRIDKQIDFRLWDLEKQIKQL-- 888
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLERLKEEIEKSSKQRam 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 889 ------------RNYRDNYQAFCKWLYDAKRRQDSLESMKFGDSNTVMRFLNEQKNLHSEISGKRDKSEEVQKIAELCAN 956
Cdd:TIGR00606 658 lagatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 957 SIKDYELQLASYTSGLETL--------LNIPIKRTMI-------------QSPSGVILQ---EAADVHARYIELLTR--S 1010
Cdd:TIGR00606 738 IIDLKEKEIPELRNKLQKVnrdiqrlkNDIEEQETLLgtimpeeesakvcLTDVTIMERfqmELKDVERKIAQQAAKlqG 817
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1011 GDYYRFLSEMLKSLEDlklKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDG 1090
Cdd:TIGR00606 818 SDLDRTVQQVNQEKQE---KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1091 KSAKQnldkCYGQIKELNEKITRL-TYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQK-LES------EK 1162
Cdd:TIGR00606 895 TEVQS----LIREIKDAKEQDSPLeTFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKdIENkiqdgkDD 970
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1163 AIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKnqctqvvqERESLLvkikvleQDKARLQRLEDELNRAKS 1242
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK--------IQERWL-------QDNLTLRKRENELKEVEE 1035
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1243 TLeaetrvKQRLeceKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKriEERCRRKlEDST 1322
Cdd:TIGR00606 1036 EL------KQHL---KEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR--EPQFRDA-EEKY 1103
|
....*....
gi 58530842 1323 RETQSQLET 1331
Cdd:TIGR00606 1104 REMMIVMRT 1112
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1654-1692 |
1.22e-05 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 43.86 E-value: 1.22e-05
10 20 30
....*....|....*....|....*....|....*....
gi 58530842 1654 FLQGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTALEL 1692
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1004-1346 |
1.56e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.12 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1004 IELLTRSGDYYRFLSEMLKSLEDLKLKNTKIEVLEEElrlARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELK 1083
Cdd:pfam05557 30 IELEKKASALKRQLDRESDRNQELQKRIRLLEKREAE---AEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1084 RqaeldgkSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENlgwqklesEKA 1163
Cdd:pfam05557 107 S-------CLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEA--------EQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1164 IKEKEYEIErlrvllqeegtrKREYENELAKASNRIQESknqCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKST 1243
Cdd:pfam05557 172 IKELEFEIQ------------SQEQDSEIVKNSKSELAR---IPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1244 LEAETRVKQR---LECEKQQIQNDLNQWKtqysrkeeairKIESEREKSEREKNSLRSEIERLQAEIKRIEERcRRKLED 1320
Cdd:pfam05557 237 LEREEKYREEaatLELEKEKLEQELQSWV-----------KLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEE-NSSLTS 304
|
330 340
....*....|....*....|....*....
gi 58530842 1321 STRE---TQSQLETERSRYQREIDKLRQR 1346
Cdd:pfam05557 305 SARQlekARRELEQELAQYLKKIEDLNKK 333
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1164-1335 |
1.60e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 49.52 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1164 IKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQctqVVQERESLLVKIKVLEQDKARLQRLEDELNRAKST 1243
Cdd:COG4372 40 LDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE---LEELNEQLQAAQAELAQAQEELESLQEEAEELQEE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1244 LEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIrkieserekserekNSLRSEIERLQAEIKRIEERCRRKLEDSTR 1323
Cdd:COG4372 117 LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEEL--------------KELEEQLESLQEELAALEQELQALSEAEAE 182
|
170
....*....|..
gi 58530842 1324 ETQSQLETERSR 1335
Cdd:COG4372 183 QALDELLKEANR 194
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
285-373 |
1.69e-05 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 45.40 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 285 WINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQI 364
Cdd:smart00150 13 WLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKEL 92
|
....*....
gi 58530842 365 TKCIDVHLK 373
Cdd:smart00150 93 AEERRQKLE 101
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1103-1314 |
1.76e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.01 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1103 QIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKndydQLQKARQCEKENLGWQKLESEKAIKEkeyEIERLRVLLQEEG 1182
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR----KKNGENIARKQNKYDELVEEAKTIKA---EIEELTDELLNLV 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1183 TRKREYENELAKASNRIQESKNQ-------------------CTQVVQERESLLVKIKvlEQDKARLQRLEDELNRAKst 1243
Cdd:PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKieqfqkvikmyekggvcptCTQQISEGPDRITKIK--DKLKELQHSLEKLDTAID-- 323
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1244 lEAETRVKQRLECEK--QQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERC 1314
Cdd:PHA02562 324 -ELEEIMDEFNEQSKklLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1062-1231 |
1.82e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 48.99 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1062 LQKYQAECSQFKAKLASLEElKRQAELDgksakqnldkcygqikELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQ 1141
Cdd:pfam09787 63 IQKLRGQIQQLRTELQELEA-QQQEEAE----------------SSREQLQELEEQLATERSARREAEAELERLQEELRY 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1142 LqkarqceKENLGWQKLESEKAIKEKEYEIERLRVLL---QEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLV 1218
Cdd:pfam09787 126 L-------EEELRRSKATLQSRIKDREAEIEKLRNQLtskSQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVL 198
|
170
....*....|...
gi 58530842 1219 KIKVLEQDKARLQ 1231
Cdd:pfam09787 199 QLERMEQQIKELQ 211
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1106-1305 |
2.15e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 49.30 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1106 ELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQK----------ARQCEKENLGWQKLESEKAIKEKEYEIERLR 1175
Cdd:pfam19220 31 QLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRelagltrrlsAAEGELEELVARLAKLEAALREAEAAKEELR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1176 VLLQE--------------EGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAK 1241
Cdd:pfam19220 111 IELRDktaqaealerqlaaETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAEL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 58530842 1242 STLEAE-TRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQA 1305
Cdd:pfam19220 191 AELTRRlAELETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTA 255
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
923-1452 |
3.30e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 923 VMRFLNEQKN----LHSEISGKRDKS------EEVQKIAELCAnSIKDYELQlasytsgletllnipiKRTMIQSpsgvi 992
Cdd:PRK02224 178 VERVLSDQRGsldqLKAQIEEKEEKDlherlnGLESELAELDE-EIERYEEQ----------------REQARET----- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 993 LQEAADVHARYIELLTRsgdyyrfLSEMLKSLEDLKLK----NTKIEVLEEELRLARDANSEncnknkfLDQNLQKYQAE 1068
Cdd:PRK02224 236 RDEADEVLEEHEERREE-------LETLEAEIEDLRETiaetEREREELAEEVRDLRERLEE-------LEEERDDLLAE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1069 CSQFKAKLASLEElkRQAELDGK--SAKQNLDKCYGQIKELNEKITRLTYEIEDekrrrksVEDRFDQQKNDYDQLQKAR 1146
Cdd:PRK02224 302 AGLDDADAEAVEA--RREELEDRdeELRDRLEECRVAAQAHNEEAESLREDADD-------LEERAEELREEAAELESEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1147 QCEKENLGwqklESEKAIKEKEYEIERLRV-----------------LLQEEGTRKREYENE----LAKASNRIQESKN- 1204
Cdd:PRK02224 373 EEAREAVE----DRREEIEELEEEIEELRErfgdapvdlgnaedfleELREERDELREREAEleatLRTARERVEEAEAl 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1205 -------QCTQ---------VVQERESLLVKIKV-LEQDKARLQRLEDELNRAKSTLEAETRVK---------------- 1251
Cdd:PRK02224 449 leagkcpECGQpvegsphveTIEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRIErleerredleeliaer 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1252 -----------QRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERL------QAEIKRIEERC 1314
Cdd:PRK02224 529 retieekreraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLerirtlLAAIADAEDEI 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1315 RRKLEdsTRETQSQLETERSryqreiDKLRQRpygshRETQTECEWTVDTSKLvfDGLRKKVTAMQLYECQLIDKttLDK 1394
Cdd:PRK02224 609 ERLRE--KREALAELNDERR------ERLAEK-----RERKRELEAEFDEARI--EEAREDKERAEEYLEQVEEK--LDE 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 58530842 1395 LlkgkksvEEVASEIQpflrgaGSIAGASASPKEKYSLveakRKKLISPESTVMLLEA 1452
Cdd:PRK02224 672 L-------REERDDLQ------AEIGAVENELEELEEL----RERREALENRVEALEA 712
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
802-1249 |
3.32e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 802 DKVEAYRcglkKIKNDLNLKKSLLATMKTELQKAQQIHSQTSQQYPLYDL--DLGKFGEKVTQLTDRWQRIDKQID---- 875
Cdd:COG4717 85 EKEEEYA----ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEelre 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 876 --FRLWDLEKQIKQLRNYRDNYQAFCKW-----LYDAKRRQDSLEsmkfGDSNTVMRFLNEQKNLHSEISGKRDKSEEVQ 948
Cdd:COG4717 161 leEELEELEAELAELQEELEELLEQLSLateeeLQDLAEELEELQ----QRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 949 KIAELcANSIKDYELQLASYTSGLETLLNIPIKRTMIQSPSGVILQEAADVHARYIELLTRSGDYYRFLSEMLKSLEDLK 1028
Cdd:COG4717 237 EAAAL-EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1029 LKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELN 1108
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1109 EKitrltyeiEDEKRRRKSVEDRFDQQKNDYdqLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRvllqeegtrkrey 1188
Cdd:COG4717 396 EY--------QELKEELEELEEQLEELLGEL--EELLEALDEEELEEELEELEEELEELEEELEELR------------- 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1189 eNELAKASNRIQ--ESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETR 1249
Cdd:COG4717 453 -EELAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1103-1346 |
3.46e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1103 QIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDY----DQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRvll 1178
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELnqllRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALE--- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 qeegTRKREYENELAKASNRIQES----KNQCTQVVQERESLLVKIKVLEQDKARL-----QRLEDELNRAKSTLEA--E 1247
Cdd:pfam12128 329 ----DQHGAFLDADIETAAADQEQlpswQSELENLEERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKLAKirE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1248 TRVKQRLECEK--QQIQNDLNQWKTQYSR--KEEAIRKIESEREKSEREKNSLRSEIERLQAEIKriEERCrrkleDSTR 1323
Cdd:pfam12128 405 ARDRQLAVAEDdlQALESELREQLEAGKLefNEEEYRLKSRLGELKLRLNQATATPELLLQLENF--DERI-----ERAR 477
|
250 260
....*....|....*....|...
gi 58530842 1324 ETQSQLETERSRYQREIDKLRQR 1346
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKR 500
|
|
| PLEC |
smart00250 |
Plectin repeat; |
2012-2048 |
4.71e-05 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 42.47 E-value: 4.71e-05
10 20 30
....*....|....*....|....*....|....*..
gi 58530842 2012 DTLEESSPIAAIFDTENLEKISITEGIERGIVDSITG 2048
Cdd:smart00250 2 RLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1194-1340 |
6.34e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1194 KASNRIQESKNQCTQVVQERESllvKIKVLEQDKarLQRLEDELNRAKSTLEAETRVKQRlecEKQQIQNDLNQWKTQYS 1273
Cdd:PRK12704 28 IAEAKIKEAEEEAKRILEEAKK---EAEAIKKEA--LLEAKEEIHKLRNEFEKELRERRN---ELQKLEKRLLQKEENLD 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 58530842 1274 RKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDS---TRE---------TQSQLETERSRYQREI 1340
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIsglTAEeakeillekVEEEARHEAAVLIKEI 178
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1025-1282 |
6.68e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.59 E-value: 6.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1025 EDLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQI 1104
Cdd:COG4372 52 EELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1105 KELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLR---VLLQEE 1181
Cdd:COG4372 132 KQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELaeaEKLIES 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1182 GTRKREYENELAKASNRIQESKNQCTQVVQEREsLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQI 1261
Cdd:COG4372 212 LPRELAEELLEAKDSLEAKLGLALSALLDALEL-EEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEE 290
|
250 260
....*....|....*....|.
gi 58530842 1262 QNDLNQWKTQYSRKEEAIRKI 1282
Cdd:COG4372 291 AALELKLLALLLNLAALSLIG 311
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1150-1346 |
6.82e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 6.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1150 KENLGWQKLESEKAIKEKEYEIERLRVLLqeegtrkREYENELA--KASNRIQESKNQCTQVVQERESL---LVKIKV-L 1223
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKEL-------EEAEAALEefRQKNGLVDLSEEAKLLLQQLSELesqLAEARAeL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1224 EQDKARLQRLEDELNRAKSTLEA--ETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRkiesereksereknSLRSEIE 1301
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNHPDVI--------------ALRAQIA 301
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 58530842 1302 RLQAEIKRIEERcrrkLEDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG3206 302 ALRAQLQQEAQR----ILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1013-1307 |
7.43e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1013 YYRFLSEMLKSLEDLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQ------NLQKYQAEcsQFKAKLASLEELKRqa 1086
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkeleeKLKKYNLE--ELEKKAEEYEKLKE-- 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1087 ELDGKSAKQ-NLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDR-----FDQQKNDYDQLQKARQCEKENLGWQKLES 1160
Cdd:PRK03918 533 KLIKLKGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEleelgFESVEELEERLKELEPFYNEYLELKDAEK 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1161 EKAIKEKEYEIErlrvllQEEGTRKREyenELAKASNRIQESKNQCTQVVQE---------RESLLVKIKVLEQDKARLQ 1231
Cdd:PRK03918 613 ELEREEKELKKL------EEELDKAFE---ELAETEKRLEELRKELEELEKKyseeeyeelREEYLELSRELAGLRAELE 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1232 RLEDELNRAKSTLEAETRVKQRLECEKQQIQNdlnqwktqysrKEEAIRKIESEREKSEREKNSLR----SEIERLQAEI 1307
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEK-----------LEKALERVEELREKVKKYKALLKeralSKVGEIASEI 752
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1150-1438 |
7.69e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 7.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1150 KENLGWQKLES-----EKAIKEKEYEIERLRVLLQEEGT---RKREYENELAKASNRIQEsknqctqVVQERESLLVKIK 1221
Cdd:PRK03918 152 RQILGLDDYENayknlGEVIKEIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINE-------ISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1222 VLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKnSLRSEIE 1301
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI-KLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1302 RLQAEIKRIEERCRRkLEDSTRETQSQLEtERSRYQREIDKLRQRpygsHRETQTECEwTVDTSKLVFDGLRKKVTAMQL 1381
Cdd:PRK03918 304 EYLDELREIEKRLSR-LEEEINGIEERIK-ELEEKEERLEELKKK----LKELEKRLE-ELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58530842 1382 YECQLIDKTTLD---KLLKGKKSVEEVASEIQPFLRGAGSIAGASASPKEKYS-LVEAKRK 1438
Cdd:PRK03918 377 LKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEeLKKAKGK 437
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1153-1346 |
1.20e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1153 LGWQkleSEKAIKEKEYEIERLRVLLQEEGTRKREyeneLAKASNRIQESKNQCTQVVQERESLLVkikvLEQDKARLQR 1232
Cdd:COG4913 604 LGFD---NRAKLAALEAELAELEEELAEAEERLEA----LEAELDALQERREALQRLAEYSWDEID----VASAEREIAE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1233 LEDELNRAKSTLEAETRVKQRLEcEKQQIQNDLNQwktqysRKEEAIRKIEsereksereknSLRSEIERLQAEIKRIEE 1312
Cdd:COG4913 673 LEAELERLDASSDDLAALEEQLE-ELEAELEELEE------ELDELKGEIG-----------RLEKELEQAEEELDELQD 734
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 58530842 1313 RCRR--------------------KLEDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG4913 735 RLEAaedlarlelralleerfaaaLGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1012-1359 |
1.40e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1012 DYYRFLSEMLKslEDLKLKNTKIEVLEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLA-SLEELKRQAELdg 1090
Cdd:TIGR00618 176 DQYTQLALMEF--AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQqSHAYLTQKREA-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1091 KSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKsvedrFDQQKNDYDQLQKA-RQCEKE-NLGWQKLESEKAIKEKE 1168
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRARIEELRAQEAVLEETQERIN-----RARKAAPLAAHIKAvTQIEQQaQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1169 YEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERE---SLLVKIKVLEQDKarlQRLEDELNRAKSTLE 1245
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCqqhTLTQHIHTLQQQK---TTLTQKLQSLCKELD 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1246 AETRVKQRLECEKQQiQNDLNQWKTQYSRKEEAIRKIESEreksereknsLRSEIERlQAEIKRIEERCRRKLEDSTRET 1325
Cdd:TIGR00618 404 ILQREQATIDTRTSA-FRDLQGQLAHAKKQQELQQRYAEL----------CAAAITC-TAQCEKLEKIHLQESAQSLKER 471
|
330 340 350
....*....|....*....|....*....|....
gi 58530842 1326 QSQLETERSRYQREIDKLRQRPYGSHRETQTECE 1359
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
825-1352 |
1.42e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 825 LATMKTELQKAQQIHSQTSQQYPLYDLDLGKFGeKVTQLTDRW-QRIDKQIDFRLWDLEKQIKQLRNYRDNYQAFCKWLY 903
Cdd:pfam12128 339 IETAAADQEQLPSWQSELENLEERLKALTGKHQ-DVTAKYNRRrSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 904 DAkrrqdsLESmkfgdsntvmrFLNEQKNlhseiSGKRDKSEEvqkiAELCANSIKDYELQLASYTSGLETLLNIPIKRT 983
Cdd:pfam12128 418 QA------LES-----------ELREQLE-----AGKLEFNEE----EYRLKSRLGELKLRLNQATATPELLLQLENFDE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 984 MIQSPSGVILQEAADVHARYIELLT----------RSGDYYRFLSEMLKSLEDLKLK-----NTKIEVLEEEL-----RL 1043
Cdd:pfam12128 472 RIERAREEQEAANAEVERLQSELRQarkrrdqaseALRQASRRLEERQSALDELELQlfpqaGTLLHFLRKEApdweqSI 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1044 ARDANSE---NCNKNKFLDQNLQKyqAECSQFKAKL-----------ASLEELKR---QAELDGKSAKQNLDKCYGQIKE 1106
Cdd:pfam12128 552 GKVISPEllhRTDLDPEVWDGSVG--GELNLYGVKLdlkridvpewaASEEELRErldKAEEALQSAREKQAAAEEQLVQ 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1107 LNEKITRLTYEIEDEKRRRKSVEDR----FDQQKNDYDQLQKARQCEKENLG--WQKLESEKAIKEKEYE--IERLRVLL 1178
Cdd:pfam12128 630 ANGELEKASREETFARTALKNARLDlrrlFDEKQSEKDKKNKALAERKDSANerLNSLEAQLKQLDKKHQawLEEQKEQK 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 QEEGTRKREYENELakasnrIQESKNQCTQVVQE----RESLLVKIKVLEQDKAR-LQRL---EDELNRAKSTLEAETRV 1250
Cdd:pfam12128 710 REARTEKQAYWQVV------EGALDAQLALLKAAiaarRSGAKAELKALETWYKRdLASLgvdPDVIAKLKREIRTLERK 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1251 KQRLECEKQQI----QNDLNQWKTQYSRKEEAIRKIesereksereknslRSEIERLQAEIKRIEERCRRKLedstretq 1326
Cdd:pfam12128 784 IERIAVRRQEVlryfDWYQETWLQRRPRLATQLSNI--------------ERAISELQQQLARLIADTKLRR-------- 841
|
570 580
....*....|....*....|....*.
gi 58530842 1327 SQLETERsryqREIDKLRQRPYGSHR 1352
Cdd:pfam12128 842 AKLEMER----KASEKQQVRLSENLR 863
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1127-1345 |
1.47e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1127 SVEDRFDQQKNDYDQLQKarqcekenlgwQKLESEKAIKEKEYEIERLR-----VLLQEEGT----RKREYENELAKASN 1197
Cdd:COG3206 165 NLELRREEARKALEFLEE-----------QLPELRKELEEAEAALEEFRqknglVDLSEEAKlllqQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1198 RIQESKNQCTQVVQERESLLVKIKVLEQD------KARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQwktq 1271
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQSpviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---- 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 58530842 1272 ysRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIeercrrkledstretqSQLETERSRYQREIDKLRQ 1345
Cdd:COG3206 310 --EAQRILASLEAELEALQAREASLQAQLAQLEARLAEL----------------PELEAELRRLEREVEVARE 365
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1073-1237 |
1.60e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1073 KAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNdydQLQKARQCEKEn 1152
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLER---ELSEARSEERR- 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1153 lgwqKLESEKAIKEKEYEIERLRVLLQEEgtrkreyENELAKASNRIQESKNQCTQVVQEReslLVKIKVLEQ-DKARLQ 1231
Cdd:COG2433 460 ----EIRKDREISRLDREIERLERELEEE-------RERIEELKRKLERLKELWKLEHSGE---LVPVKVVEKfTKEAIR 525
|
....*.
gi 58530842 1232 RLEDEL 1237
Cdd:COG2433 526 RLEEEY 531
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1037-1278 |
2.32e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1037 LEEELRLARDANSENcnkNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKsAKQNLDkcygQIKELNEKITRLTY 1116
Cdd:COG3206 162 LEQNLELRREEARKA---LEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEE-AKLLLQ----QLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1117 EIEDEKRRRKSVEDRFDQQKNDYDQLQkarqcekENLGWQKLESEkaIKEKEYEIERLRVLLQEEGTRKREYENELAKAS 1196
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELL-------QSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1197 NRIQesknqctqvvQERESLLVKikvLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQY---- 1272
Cdd:COG3206 305 AQLQ----------QEAQRILAS---LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYesll 371
|
....*.
gi 58530842 1273 SRKEEA 1278
Cdd:COG3206 372 QRLEEA 377
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
815-1327 |
2.46e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 815 KNDLNLKKSLLATMKTELQKAQQIhsqtSQQYPLYDL-DLGK-----FGEKVTQLTDRWQRIDKQIDFRLWDLEKQIKQL 888
Cdd:TIGR01612 1066 KNIELLNKEILEEAEINITNFNEI----KEKLKHYNFdDFGKeenikYADEINKIKDDIKNLDQKIDHHIKALEEIKKKS 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 889 RNYRDNYQAFCKWLYDAKRR---QDSLESMKFGDSNTVMR------FLNEQKNLHSEISG-KRDKS--EEVQKIAELCAN 956
Cdd:TIGR01612 1142 ENYIDEIKAQINDLEDVADKaisNDDPEEIEKKIENIVTKidkkknIYDEIKKLLNEIAEiEKDKTslEEVKGINLSYGK 1221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 957 SI------------KDYELQLASYTSGLETLLNIPIKRTMIQSPSGVILQEAADVHARYIElLTRSGDYYRFLSEMLKSL 1024
Cdd:TIGR01612 1222 NLgklflekideekKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNIS-HDDDKDHHIISKKHDENI 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1025 EDLKLKNTKIEvleeelrlarDANSENCNKN---KFLDQNL---QKYQAECSQFKAKLASL----------------EEL 1082
Cdd:TIGR01612 1301 SDIREKSLKII----------EDFSEESDINdikKELQKNLldaQKHNSDINLYLNEIANIynilklnkikkiidevKEY 1370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1083 KRQAELDGKSAKQNLDK----------------CYGQI------KELNEKITRL----TYEIEDEKRRRKSVEDRFDQQK 1136
Cdd:TIGR01612 1371 TKEIEENNKNIKDELDKseklikkikddinleeCKSKIestlddKDIDECIKKIkelkNHILSEESNIDTYFKNADENNE 1450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1137 NDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRvllqEEGTRKREYENELAKASNRIQESKNQCTQVVQERESL 1216
Cdd:TIGR01612 1451 NVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELK----EHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTEL 1526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1217 LVKIKVLE------QDKARLQRLEDELNRAKS--TLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKeeAIRKIeserek 1288
Cdd:TIGR01612 1527 LNKYSALAiknkfaKTKKDSEIIIKEIKDAHKkfILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNK--AAIDI------ 1598
|
570 580 590
....*....|....*....|....*....|....*....
gi 58530842 1289 sereknslRSEIERLQAEIKRIEErCRRKLEDSTRETQS 1327
Cdd:TIGR01612 1599 --------QLSLENFENKFLKISD-IKKKINDCLKETES 1628
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
713-1331 |
2.68e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.58 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 713 QNDSQAIAEVLNQLKDMLANfrGSEKYCYLQNEVFGLFQKLENINGVTDGYLNSLCTVRALLQAILQTEDMLKVYEARLT 792
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERL--KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELR 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 793 EEETVCLDLDKVEAYRCGLKKIKNDLNLKKSLLATMKTELQKAQQIHSQTSQQYPLYDLDLGKfgekvtqlTDRWQRIDK 872
Cdd:TIGR00606 482 KAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK--------MDKDEQIRK 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 873 QidfrLWDLEKQIKQLRNYRDNYQAFCKWLYDAKRRQDSLESmkfgdsntvmRFLNEQKNLHS-EISGKRDKSEEVQKIA 951
Cdd:TIGR00606 554 I----KSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRD----------RLAKLNKELASlEQNKNHINNELESKEE 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 952 ELCANSIKDYElqlASYTSGLETLLNIPIKRTMIQSPSGVILQEAADVHARYIELLTRSGDYYRFLSEmlKSLEDLKLKN 1031
Cdd:TIGR00606 620 QLSSYEDKLFD---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQ--RVFQTEAELQ 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1032 TKIEVLEEELRLARDansencnKNKFLDQNLQKYQAECSQFKAKLASleelkRQAELDGKSAkqnldkcygQIKELNEKI 1111
Cdd:TIGR00606 695 EFISDLQSKLRLAPD-------KLKSTESELKKKEKRRDEMLGLAPG-----RQSIIDLKEK---------EIPELRNKL 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1112 TRLTYEIEDEKrrrKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIE-------RLRVLLQEEGTR 1184
Cdd:TIGR00606 754 QKVNRDIQRLK---NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQaaklqgsDLDRTVQQVNQE 830
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1185 KREYENELAKASNRIQESKnQCTQVVQERESLLvKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLEC------EK 1258
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNR-KLIQDQQEQIQHL-KSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLireikdAK 908
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1259 QQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDSTRETQSQLET 1331
Cdd:TIGR00606 909 EQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNT 981
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1017-1346 |
3.20e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1017 LSEMLKSLEDLKLKNTkieVLEEELRLARDanSENCNKNKFLDQN-LQKYQAEcsqfkaklasLEELKRQAEldgkSAKQ 1095
Cdd:PRK04863 309 LVEMARELAELNEAES---DLEQDYQAASD--HLNLVQTALRQQEkIERYQAD----------LEELEERLE----EQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1096 NLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFD-QQKN--DYDQ----LQKARQCekenLGWQKLESEKAikeKE 1168
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDvQQTRaiQYQQavqaLERAKQL----CGLPDLTADNA---ED 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1169 YeIERLRVLLQEEGTRKREYENEL--AKASNRIQE-------------SKNQCTQVVQERESLLVKIKVLEQdkaRLQRL 1233
Cdd:PRK04863 443 W-LEEFQAKEQEATEELLSLEQKLsvAQAAHSQFEqayqlvrkiagevSRSEAWDVARELLRRLREQRHLAE---QLQQL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1234 EDELNRAKSTLEAETRVKQRL-ECEKQQIQNDLNQWKTQ--YSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRI 1310
Cdd:PRK04863 519 RMRLSELEQRLRQQQRAERLLaEFCKRLGKNLDDEDELEqlQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL 598
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 58530842 1311 E-----------------ERCRRKLEDS----------------TRETQSQLETERSRYQREIDKLRQR 1346
Cdd:PRK04863 599 AarapawlaaqdalarlrEQSGEEFEDSqdvteymqqllerereLTVERDELAARKQALDEEIERLSQP 667
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1089-1359 |
3.39e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1089 DGKSAKQNLDKCYgQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQ--CEKENlgwQKLESEKAIKE 1166
Cdd:TIGR00606 167 EGKALKQKFDEIF-SATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDqiTSKEA---QLESSREIVKS 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1167 KEYEIERLRVLLQE---EGTRKREYENELAKASNRIQESKNQCTQVVQERESLLV----KIKVLEQDKARLQR-LEDELN 1238
Cdd:TIGR00606 243 YENELDPLKNRLKEiehNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdeQLNDLYHNHQRTVReKERELV 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1239 RAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKieserEKSEREKNSLRSEIERLQ------AEIKRIEE 1312
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA-----RDSLIQSLATRLELDGFErgpfseRQIKNFHT 397
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 58530842 1313 RCRRKLEDSTR---ETQSQLETERSRYQREIDKLRQRPYGSHRETQTECE 1359
Cdd:TIGR00606 398 LVIERQEDEAKtaaQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKE 447
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
993-1193 |
4.00e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 993 LQEAADVHARYIELLTRSGDYYRFLSEMLKSLEDLKLKNTKIEVLEEELRLARDANSEncnknkfldqnlqkyqaecsqf 1072
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD---------------------- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1073 kakLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDY--DQLQKARQCEK 1150
Cdd:COG4913 687 ---LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleERFAAALGDAV 763
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 58530842 1151 ENLGWQKLESE--KAIKEKEYEIERLRVLLQEegtRKREYENELA 1193
Cdd:COG4913 764 ERELRENLEERidALRARLNRAEEELERAMRA---FNREWPAETA 805
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1170-1342 |
4.25e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1170 EIERLRVLLQEEGTRKREYENELAKASNRIQESKnqctqvvQERESLLVKIKVLEQD----KARLQRLEDELNRAKSTLE 1245
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAK-------TELEDLEKEIKRLELEieevEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1246 AetrvkqrlecekQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDsTRET 1325
Cdd:COG1579 91 Y------------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE-LEAE 157
|
170
....*....|....*..
gi 58530842 1326 QSQLETERSRYQREIDK 1342
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1022-1343 |
5.87e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1022 KSLEDLKLKNTKIEV-LEEELRLARDANSENcNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDgksAKQNLDKC 1100
Cdd:pfam05483 120 KAIQELQFENEKVSLkLEEEIQENKDLIKEN-NATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMD---LNNNIEKM 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1101 YGQIKELnekitrltyEIEDEKRRrksVEDRFdQQKNDYDQLQKARQCEKENLGWQKLESEK---AIKEKEYEIERLRVL 1177
Cdd:pfam05483 196 ILAFEEL---------RVQAENAR---LEMHF-KLKEDHEKIQHLEEEYKKEINDKEKQVSLlliQITEKENKMKDLTFL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1178 LQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKI-------KVLEQD-----KARLQRLE------DELNR 1239
Cdd:pfam05483 263 LEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLqrsmstqKALEEDlqiatKTICQLTEekeaqmEELNK 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1240 AKST-------LEAET-RVKQRLECEKQQIQNDLNQWK------TQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQA 1305
Cdd:pfam05483 343 AKAAhsfvvteFEATTcSLEELLRTEQQRLEKNEDQLKiitmelQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLD 422
|
330 340 350
....*....|....*....|....*....|....*...
gi 58530842 1306 EIKRIEercrrKLEDSTRETQSQLETERSRYQREIDKL 1343
Cdd:pfam05483 423 EKKQFE-----KIAEELKGKEQELIFLLQAREKEIHDL 455
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1019-1259 |
6.94e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.13 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1019 EMLKSLEDLKLKNTKIEVLEEELRLARDANSENCNKNKfldQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLD 1098
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELKEKRDELNEELKELA---EKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1099 KCYGQIKELNEKITRLTYEIEDEKRRRKSVED--------RFDQQKNDYDQ------LQKARQCEKENLGWQK-LESEKA 1163
Cdd:COG1340 82 ELNEKLNELREELDELRKELAELNKAGGSIDKlrkeierlEWRQQTEVLSPeeekelVEKIKELEKELEKAKKaLEKNEK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1164 IKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKI-----------KVLEQDKARLQR 1232
Cdd:COG1340 162 LKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIveaqekadelhEEIIELQKELRE 241
|
250 260
....*....|....*....|....*..
gi 58530842 1233 LEDELNRAKSTLEAETRVKQRLECEKQ 1259
Cdd:COG1340 242 LRKELKKLRKKQRALKREKEKEELEEK 268
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1184-1355 |
7.91e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1184 RKREYENELAKASNRIQESKNqctqvvqERESLLvkikvleQDKARLQRLEDELNRAKSTLEAETRVKQRlecEKQQIQN 1263
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKR-------ELSSLQ-------SELRRIENRLDELSQELSDASRKIGEIEK---EIEQLEQ 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1264 DLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCrRKLEDSTRETQ--------SQLETERSR 1335
Cdd:TIGR02169 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-NDLEARLSHSRipeiqaelSKLEEEVSR 809
|
170 180
....*....|....*....|
gi 58530842 1336 YQREIDKLRQRPYGSHRETQ 1355
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKE 829
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1075-1484 |
9.14e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1075 KLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQcEKENLG 1154
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI-EKEEEK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1155 WQKLESEKAIKEKEYEIERLRVLLQEegTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLE 1234
Cdd:pfam02463 267 LAQVLKENKEEEKEKKLQEEELKLLA--KEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1235 DELNRAKSTLEAET-RVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEER 1313
Cdd:pfam02463 345 KELEIKREAEEEEEeELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1314 CRRKLEDSTrETQSQLETERSRYQREIDKLrqrpygsHRETQTECEWTVDTSKLVFDGLRKKVTAMQLYECQLIDKTTLD 1393
Cdd:pfam02463 425 KKEELEILE-EEEESIELKQGKLTEEKEEL-------EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1394 KLL-KGKKSVEEVASEIQPFLRGAGSIAGASASPKEKYSLVEAKRKKLISPESTVMLLEAQAATGGIIDPHRNEKLTVDS 1472
Cdd:pfam02463 497 ERSqKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLG 576
|
410
....*....|..
gi 58530842 1473 AIARDLIDFDDR 1484
Cdd:pfam02463 577 ARKLRLLIPKLK 588
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1103-1237 |
1.05e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1103 QIKELNEKITRLTYEIEDEKRrrksvedrfDQQKNDYDQLQKARQcEKENLGwQKLESEKAIKEKE----YEIERLRVLL 1178
Cdd:COG0542 412 ELDELERRLEQLEIEKEALKK---------EQDEASFERLAELRD-ELAELE-EELEALKARWEAEkeliEEIQELKEEL 480
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 58530842 1179 QEEGTRKREYENELAKASNRIQESKNQCTQVVQERE-----SLLVKI---KVLEQDKARLQRLEDEL 1237
Cdd:COG0542 481 EQRYGKIPELEKELAELEEELAELAPLLREEVTEEDiaevvSRWTGIpvgKLLEGEREKLLNLEEEL 547
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1056-1346 |
1.18e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 43.86 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1056 KFLDQNLQKYQAECSQFK--------AKLASLEELKR-------------QAELDGKSAKQNLDKCYGQIKELNEKITR- 1113
Cdd:pfam05701 38 KLVELELEKVQEEIPEYKkqseaaeaAKAQVLEELEStkrlieelklnleRAQTEEAQAKQDSELAKLRVEEMEQGIADe 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1114 ----LTYEIEDEKRRR-------KSVEDRFDQQKNDYDQLQK----ARQCEKENLGWQKlESEKAIKEKEYEIERLRVLL 1178
Cdd:pfam05701 118 asvaAKAQLEVAKARHaaavaelKSVKEELESLRKEYASLVSerdiAIKRAEEAVSASK-EIEKTVEELTIELIATKESL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 qeegtrkreyenELAKASNRIQESKNQCTQVVQERESLLVKiKVLEQDKARLQRLEDELNRA---KSTLEAETRVKQRLE 1255
Cdd:pfam05701 197 ------------ESAHAAHLEAEEHRIGAALAREQDKLNWE-KELKQAEEELQRLNQQLLSAkdlKSKLETASALLLDLK 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1256 CE-KQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRieercrrkLEDSTRETQSQLETERS 1334
Cdd:pfam05701 264 AElAAYMESKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDEVNC--------LRVAAASLRSELEKEKA 335
|
330
....*....|..
gi 58530842 1335 ryqrEIDKLRQR 1346
Cdd:pfam05701 336 ----ELASLRQR 343
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1039-1346 |
1.25e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1039 EELRLARDANSENCNKNKFLDQNLQKYQAECSQFKAKLAS----------LEELKRQ--------AELDGK--SAKQNLD 1098
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAvafeadpeaeLRQLNRRrveleralADHESQeqQQRSQLE 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1099 KCYGQIKELNEKITRLTYeIEDEkrrrkSVEDRFDQQKNDYDQLQKARQCEKENlgwqklesEKAIKekeyEIERLRVLL 1178
Cdd:PRK04863 869 QAKEGLSALNRLLPRLNL-LADE-----TLADRVEEIREQLDEAEEAKRFVQQH--------GNALA----QLEPIVSVL 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1179 QEEGTRKREYENELAKASNRIQESKNQC---TQVVQERE--------SLLVKIKVL-EQDKARLQRLEDELNRAKstlEA 1246
Cdd:PRK04863 931 QSDPEQFEQLKQDYQQAQQTQRDAKQQAfalTEVVQRRAhfsyedaaEMLAKNSDLnEKLRQRLEQAEQERTRAR---EQ 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1247 ETRVKQRLEcEKQQIQNDLnqwKTQYSRKEEAIRKIESEREKSEREKNSlrSEIERLQAEIKRIEERCRRkledsTRETQ 1326
Cdd:PRK04863 1008 LRQAQAQLA-QYNQVLASL---KSSYDAKRQMLQELKQELQDLGVPADS--GAEERARARRDELHARLSA-----NRSRR 1076
|
330 340
....*....|....*....|
gi 58530842 1327 SQLETERSRYQREIDKLRQR 1346
Cdd:PRK04863 1077 NQLEKQLTFCEAEMDNLTKK 1096
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1157-1345 |
1.30e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 43.26 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1157 KLESEKAIKEKEYEIerlRVLLQEEGTRKREY---ENELAKASNRIQesknqctQVVQERESLLVKIKVLEQ-------- 1225
Cdd:pfam15905 68 NLKESKDQKELEKEI---RALVQERGEQDKRLqalEEELEKVEAKLN-------AAVREKTSLSASVASLEKqlleltrv 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1226 ------------DKARLQRLEDELNRAKSTLEAETR---VKQR-LECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKS 1289
Cdd:pfam15905 138 nellkakfsedgTQKKMSSLSMELMKLRNKLEAKMKevmAKQEgMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEE 217
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 58530842 1290 ereknslRSEIERLQAEIKRIEerCRRKLEDSTRETQSQLETERSRYQREIDKLRQ 1345
Cdd:pfam15905 218 -------KSETEKLLEYITELS--CVSEQVEKYKLDIAQLEELLKEKNDEIESLKQ 264
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
657-1221 |
1.35e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 657 TNREND-KQETWMLMELQKIRRQIEHcEGRMTLKNLPLADQgSSHHITVKINELKSVQNDSQAIAEVLNQLKDMlanfrG 735
Cdd:pfam05483 250 TEKENKmKDLTFLLEESRDKANQLEE-KTKLQDENLKELIE-KKDHLTKELEDIKMSLQRSMSTQKALEEDLQI-----A 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 736 SEKYCYLQNEVFGLFQKLENINGVTDGYLNSLCTVRALLQAILQTEdmlkvyEARLTEEE----TVCLDLDKVEAYRCGL 811
Cdd:pfam05483 323 TKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTE------QQRLEKNEdqlkIITMELQKKSSELEEM 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 812 KKIKNDlnlKKSLLATMKTELQKAQQIHSQTSQQYPLYDLDLGKFGEKVTQLTDRWQRIDkqidfrlwDLEKQIKQLRNY 891
Cdd:pfam05483 397 TKFKNN---KEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIH--------DLEIQLTAIKTS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 892 RDNYqafckwLYDAKRRQDSLESMKFGD----SNTVMRFLnEQKNLHSEISgkrDKSEEVQKIAELCANSIKDYELQLAS 967
Cdd:pfam05483 466 EEHY------LKEVEDLKTELEKEKLKNieltAHCDKLLL-ENKELTQEAS---DMTLELKKHQEDIINCKKQEERMLKQ 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 968 YTSGLETLLNIpikRTMIQSPSGVILQEAADVHARyielLTRSGDYYRFLS-EMLKSLEDLKLKNTKIEVLEEELRlard 1046
Cdd:pfam05483 536 IENLEEKEMNL---RDELESVREEFIQKGDEVKCK----LDKSEENARSIEyEVLKKEKQMKILENKCNNLKKQIE---- 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1047 ansencNKNKFLDQNLQKYQA--ECSQFKAKLASLEELK-RQAELDGKSAKQNldkcYGQIKELNEKitrltyEIEDEKR 1123
Cdd:pfam05483 605 ------NKNKNIEELHQENKAlkKKGSAENKQLNAYEIKvNKLELELASAKQK----FEEIIDNYQK------EIEDKKI 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1124 RRKSVEDRFDQQKNDYDQ---LQKA--RQCEKEN------LGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENEL 1192
Cdd:pfam05483 669 SEEKLLEEVEKAKAIADEavkLQKEidKRCQHKIaemvalMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIEL 748
|
570 580
....*....|....*....|....*....
gi 58530842 1193 AKASNRIQESKNQCTQVVQERESLLVKIK 1221
Cdd:pfam05483 749 SNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1140-1340 |
1.45e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.86 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1140 DQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQ--EEGTRKREYENELAKASNRIQEsknQCTQVVQERESLL 1217
Cdd:pfam05667 327 EELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKqvEEELEELKEQNEELEKQYKVKK---KTLDLLPDAEENI 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1218 VKIK-VLEQDKARLQRLEDELNRAKSTLEAETRvkqRLeceKQQIQNdlnqwktqysRKEEAIRKIesereksereknsl 1296
Cdd:pfam05667 404 AKLQaLVDASAQRLVELAGQWEKHRVPLIEEYR---AL---KEAKSN----------KEDESQRKL-------------- 453
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 58530842 1297 rSEIERLQAEIKRIEERCRRKlEDSTRETQSQLE-----TERSRYQREI 1340
Cdd:pfam05667 454 -EEIKELREKIKEVAEEAKQK-EELYKQLVAEYErlpkdVSRSAYTRRI 500
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
1047-1251 |
1.45e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 43.69 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1047 ANSENCNKNKF---LDQNLQKYQAECSQFKAKLASLEELKRqAELDGKSAKQNLDKCYGQIKELNEKITRLTYEiedekr 1123
Cdd:pfam09726 359 SSSKNSKKQKGpggKSGARHKDPAENCIPNNQLSKPDALVR-LEQDIKKLKAELQASRQTEQELRSQISSLTSL------ 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1124 rRKSVEDRFDQQKNDYDQLQ-------KARQCEKENLGwqklESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKAS 1196
Cdd:pfam09726 432 -ERSLKSELGQLRQENDLLQtklhnavSAKQKDKQTVQ----QLEKRLKAEQEARASAEKQLAEEKKRKKEEEATAARAV 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1197 NRIQESKNQCTQVV-QERESLLVKIKVLE------QDKAR-------------------------LQRLEDELNRAKSTL 1244
Cdd:pfam09726 507 ALAAASRGECTESLkQRKRELESEIKKLThdiklkEEQIReleikvqelrkykesekdtevlmsaLSAMQDKNQHLENSL 586
|
....*..
gi 58530842 1245 EAETRVK 1251
Cdd:pfam09726 587 SAETRIK 593
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
1022-1345 |
1.52e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 43.74 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1022 KSLEDLKLK-NTKIEVLEEELrlardansencnknKFLDQNLQKYQAECSQFKAKLASLEEL------KRQAELDGKSAK 1094
Cdd:pfam15964 220 LELEKLKLLyEAKTEVLESQV--------------KSLRKDLAESQKTCEDLKERLKHKESLvaastsSRVGGLCLKCAQ 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1095 QNLDKCYGQIKELNEKITRLTYEIEDEKRR----RKSVEDRFDQQKNDYDQLQKARQCEKEnlgwQKLESEKAIKEKEYe 1170
Cdd:pfam15964 286 HEAVLAQTHTNVHMQTIERLTKERDDLMSAlvsvRSSLAEAQQRESSAYEQVKQAVQMTEE----ANFEKTKALIQCEQ- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1171 ierlrvlLQEEGTRKRE-YENELAKASNRIQESKNQCTQ-VVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLeaet 1248
Cdd:pfam15964 361 -------LKSELERQKErLEKELASQQEKRAQEKEALRKeMKKEREELGATMLALSQNVAQLEAQVEKVTREKNSL---- 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1249 rVKQRLECEKQ-------------QIQNDLNQWKTQysrKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCR 1315
Cdd:pfam15964 430 -VSQLEEAQKQlasqemdvtkvcgEMRYQLNQTKMK---KDEAEKEHREYRTKTGRQLEIKDQEIEKLGLELSESKQRLE 505
|
330 340 350
....*....|....*....|....*....|..
gi 58530842 1316 RKLEDS--TRETQSQLETERSRYQREIDKLRQ 1345
Cdd:pfam15964 506 QAQQDAarAREECLKLTELLGESEHQLHLTRL 537
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
727-1356 |
1.82e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 727 KDMLANFRGSEKYCYLQNEVFGLFQKLE-NINGVTDGY-LNSLCTVrallQAILQTEDMLKVYEARLTEEETVCLDLDKV 804
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHgKAELLTLRSqLLTLCTP----CMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 805 EAYRCGLKKIKNDLNLKKSLLATMKTELQKAQQIHSQTSQQYPlyDLDLGKFGEKVTQLTDRWQRIDKQIDFRLWDLEKQ 884
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE--RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 885 IKQLRNYRDNYQAFCKWLYDAKRRQDSLESMkFGDSNTVMRFLNEQKNLHSEISGKRDKSEEVQKIAELcANSIKDYELQ 964
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTL-HSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ-KTTLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 965 LASYTSGLETLLNIPIKRTMIQSP----------SGVILQEAADVHARYIE-----------LLTRSGDYYRFLSEMLKS 1023
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDlqgqlahakkQQELQQRYAELCAAAITctaqceklekiHLQESAQSLKEREQQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1024 LEDLKLKNTKIEVLEEElRLARDANSENCNKNKFLDQNLQKYQAECSQ-FKAKLASLEELKRQAELDGKSAKQNLDKCYG 1102
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIHPNPARQDIDNPGpLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1103 QIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEeg 1182
Cdd:TIGR00618 557 QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHL-- 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1183 trkREYENELAKASNRIQESKNQCTQVVQERESLLVKikvlEQDKARLQRLEDELNRAKSTLEAETRVKQRLEcekqQIQ 1262
Cdd:TIGR00618 635 ---QQCSQELALKLTALHALQLTLTQERVREHALSIR----VLPKELLASRQLALQKMQSEKEQLTYWKEMLA----QCQ 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1263 NDLnqwKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERCRRKLEDSTRETQSQLETERSRYQR--EI 1340
Cdd:TIGR00618 704 TLL---RELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTgaEL 780
|
650
....*....|....*.
gi 58530842 1341 DKLRQRPYGSHRETQT 1356
Cdd:TIGR00618 781 SHLAAEIQFFNRLREE 796
|
|
| ERM_helical |
pfam20492 |
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
1229-1333 |
2.16e-03 |
|
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins.
Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 39.90 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1229 RLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIK 1308
Cdd:pfam20492 14 RLKQYEEETKKAQEELEESEETAEELEEERRQAEEEAERLEQKRQEAEEEKERLEESAEMEAEEKEQLEAELAEAQEEIA 93
|
90 100
....*....|....*....|....*
gi 58530842 1309 RIEERCRRKlEDSTRETQSQLETER 1333
Cdd:pfam20492 94 RLEEEVERK-EEEARRLQEELEEAR 117
|
|
| PLEC |
smart00250 |
Plectin repeat; |
2163-2200 |
2.33e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.46 E-value: 2.33e-03
10 20 30
....*....|....*....|....*....|....*...
gi 58530842 2163 QRLQDTSSYAKILTCPKTKLKISYKDAINRSMVEDITG 2200
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1018-1271 |
2.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1018 SEMLKSLEdLKLKNTKIEVLEEELRLARDANSENCNKNKF-----------------LDQNLQKYQAECSQFKAKLASLE 1080
Cdd:pfam12128 250 FNTLESAE-LRLSHLHFGYKSDETLIASRQEERQETSAELnqllrtlddqwkekrdeLNGELSAADAAVAKDRSELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1081 ELKRQAELDG----KSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKN-DYDQLQKARQCEKENLGW 1155
Cdd:pfam12128 329 DQHGAFLDADietaAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrDIAGIKDKLAKIREARDR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1156 QKLESEKAIKEKEYEierLRVLLQEEGTRKREYENELAkasNRIQESKNQCTQVVQERESLL-VKIKVLEQDKAR----- 1229
Cdd:pfam12128 409 QLAVAEDDLQALESE---LREQLEAGKLEFNEEEYRLK---SRLGELKLRLNQATATPELLLqLENFDERIERAReeqea 482
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 58530842 1230 ----LQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQ 1271
Cdd:pfam12128 483 anaeVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1053-1346 |
2.85e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1053 NKNKFLDQNLQKYQAECSQFKAKLASLEElKRQAELDGKSAkqnLDKCYGQIKELNEKITRLTYEI------EDEKRRRK 1126
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKE-QMQEIQQSFSI---LTQCDNRSKEDIPNLQNITVRLqdltekLSEAEDML 610
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1127 SVEDR-----FDQQKNDYDQLQKARQCEKENlgwQKLESEKA------IKEKEYEIERLRVLLQEEGTRKREyeNELAKA 1195
Cdd:TIGR00618 611 ACEQHallrkLQPEQDLQDVRLHLQQCSQEL---ALKLTALHalqltlTQERVREHALSIRVLPKELLASRQ--LALQKM 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1196 SNRIQesknQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAEtrVKQRLECEKQQIQNDLNQWKTQYSRK 1275
Cdd:TIGR00618 686 QSEKE----QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD--LAAREDALNQSLKELMHQARTVLKAR 759
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1276 EEAIRKIESEREKSEREKNSL----------RSEIERLQAEIKRIEERCRRKLEDSTRETQSQLETERSRYQREIDKLRQ 1345
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQTGAELshlaaeiqffNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEE 839
|
.
gi 58530842 1346 R 1346
Cdd:TIGR00618 840 K 840
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
921-1344 |
3.14e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 921 NTVMRFLNEQKNLHSEISGKRDKSEEVQKIAELCANS---IKDYELQLASYTSGLETLLNIpiKRTMIQSPSGVILQEAA 997
Cdd:pfam05557 132 SELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAeqrIKELEFEIQSQEQDSEIVKNS--KSELARIPELEKELERL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 998 DVHARY-------IELLTRS-GDYYRFLSEMLKSLE---DLKLKNTKIEV-LEEELRLARDaNSENCNKNKFLDQNLQKY 1065
Cdd:pfam05557 210 REHNKHlnenienKLLLKEEvEDLKRKLEREEKYREeaaTLELEKEKLEQeLQSWVKLAQD-TGLNLRSPEDLSRRIEQL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1066 QAECSQFKAKLASLEELKRQAEldgksakqnldkcyGQIKELNEKITRLTYEIEDEKRRRKsvedrfdQQKNDYDQLQ-- 1143
Cdd:pfam05557 289 QQREIVLKEENSSLTSSARQLE--------------KARRELEQELAQYLKKIEDLNKKLK-------RHKALVRRLQrr 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1144 -----KARQCEKENLGW--QKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVvqERESL 1216
Cdd:pfam05557 348 vllltKERDGYRAILESydKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTL--ERELQ 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1217 LVKIKVLEQDKARLQRLEDELNRAKSTLEAE-TRVKQR-----LECEKQQIQNDLNQWKTqysrkeeaiRKIESEREKSE 1290
Cdd:pfam05557 426 ALRQQESLADPSYSKEEVDSLRRKLETLELErQRLREQkneleMELERRCLQGDYDPKKT---------KVLHLSMNPAA 496
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 58530842 1291 REKNSLRSEIERLQAEIKRIEERCrRKLEDSTRETQSQLETERSRYQREIDKLR 1344
Cdd:pfam05557 497 EAYQQRKNQLEKLQAEIERLKRLL-KKLEDDLEQVLRLPETTSTMNFKEVLDLR 549
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1159-1343 |
3.56e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.44 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1159 ESEKAIKEKEYEIERLRVLLQE----EGTRKREYENELAKASNRIQESKNQCTQVVQERESLLV----------KIKVLE 1224
Cdd:pfam09731 226 EHLDNVEEKVEKAQSLAKLVDQykelVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIahahreidqlSKKLAE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1225 QDKARLQRLEDELNRAKSTLE-AETRVKQRLEcekQQIQNDLNQWKTQYSRKEEAIRKieserekseREKNSLRSEIERL 1303
Cdd:pfam09731 306 LKKREEKHIERALEKQKEELDkLAEELSARLE---EVRAADEAQLRLEFEREREEIRE---------SYEEKLRTELERQ 373
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 58530842 1304 QAEI-KRIEERCRRKLEDSTRETQ----SQLETERSRYQREIDKL 1343
Cdd:pfam09731 374 AEAHeEHLKDVLVEQEIELQREFLqdikEKVEEERAGRLLKLNEL 418
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
928-1342 |
3.63e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 928 NEQKNLHSEISGKRDKSEEVQKIAELCANSIKDYELQLASYTSGLETLlNIPIKRTMIQSPSgviLQEAADVHARYIELL 1007
Cdd:pfam05483 254 NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI-KMSLQRSMSTQKA---LEEDLQIATKTICQL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1008 TRSGDYYRFLSEMLKSLEDLKLKNTKIEV--LEEELRLARDANSENCNKNKFLDQNLQKYQAECSQFKA----KLASLEE 1081
Cdd:pfam05483 330 TEEKEAQMEELNKAKAAHSFVVTEFEATTcsLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfknnKEVELEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1082 LKR-----QAELDGKSAKQNL-DKCYGQIKELNEKITRLTYEIED-----------EKRRRKSVED-RFDQQKNDYDQLQ 1143
Cdd:pfam05483 410 LKKilaedEKLLDEKKQFEKIaEELKGKEQELIFLLQAREKEIHDleiqltaiktsEEHYLKEVEDlKTELEKEKLKNIE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1144 KARQCEKENLGWQKLESEKA-----IKEKEYEI-----ERLRVLLQEEGTRKREYE--NELAKASNRIQESKNQ--CTQV 1209
Cdd:pfam05483 490 LTAHCDKLLLENKELTQEASdmtleLKKHQEDIinckkQEERMLKQIENLEEKEMNlrDELESVREEFIQKGDEvkCKLD 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1210 VQERESLLVKIKVLEQDKaRLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESEREKS 1289
Cdd:pfam05483 570 KSEENARSIEYEVLKKEK-QMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASA 648
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1290 EREKNSLRSEIERlQAEIKRIEErcrRKLEDSTRETQSQLEtERSRYQREIDK 1342
Cdd:pfam05483 649 KQKFEEIIDNYQK-EIEDKKISE---EKLLEEVEKAKAIAD-EAVKLQKEIDK 696
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
971-1313 |
3.69e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 971 GLETLLNIPiKRTMIQSPSGVILQEAADVH-ARYIELLTRSGDYYRFLSEMLKSLEDLKLKNTKIEVLEEELRLARDANS 1049
Cdd:pfam07888 19 GTDMLLVVP-RAELLQNRLEECLQERAELLqAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1050 ENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVE 1129
Cdd:pfam07888 98 ELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1130 DRFDQQKNDYDQLQKARQCEKENLGWQ------------------------KLESEKAIKE----------KEYEIERLR 1175
Cdd:pfam07888 178 AKLQQTEEELRSLSKEFQELRNSLAQRdtqvlqlqdtittltqklttahrkEAENEALLEElrslqerlnaSERKVEGLG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1176 VLLQEEGTRKREYENELAKASNRIQESKNQCTQV-----------VQERESLLvkiKVLEQDKARLQRLEDELNRAKSTL 1244
Cdd:pfam07888 258 EELSSMAAQRDRTQAELHQARLQAAQLTLQLADAslalregrarwAQERETLQ---QSAEADKDRIEKLSAELQRLEERL 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 58530842 1245 EAETRVKQRLECEKQQiQNDLNQWKTQYSRKEeaIRKIESEREKSEREKNSLRSEIERLQAEIKRIEER 1313
Cdd:pfam07888 335 QEERMEREKLEVELGR-EKDCNRVQLSESRRE--LQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQR 400
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1060-1303 |
4.39e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1060 QNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEDRFDQQKNDY 1139
Cdd:COG4372 38 FELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEEL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1140 DQLQKARQC---EKENLGWQKLESEKAIKEKEYEIERLR---VLLQEEGTRKREYENELAKAS-----NRIQESKNQCTQ 1208
Cdd:COG4372 118 EELQKERQDleqQRKQLEAQIAELQSEIAEREEELKELEeqlESLQEELAALEQELQALSEAEaeqalDELLKEANRNAE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1209 VVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTL-EAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIRKIESERE 1287
Cdd:COG4372 198 KEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLaLSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEE 277
|
250
....*....|....*.
gi 58530842 1288 KSEREKNSLRSEIERL 1303
Cdd:COG4372 278 LEIAALELEALEEAAL 293
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1135-1345 |
5.33e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1135 QKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLR--VLLQEEGTRKREyENELAKASNRIQESKNqctqvVQE 1212
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAeeAKKKAEDARKAE-EARKAEDARKAEEARK-----AED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1213 RESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAEtRVKQRLECEKQQiqndlNQWKTQYSRKEEAIRKIESEReksere 1292
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAE-EVRKAEELRKAE-----DARKAEAARKAEEERKAEEAR------ 1218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 58530842 1293 knslRSEIERLQAEIKRIEErCRRKLEDSTRetqsqleTERSRYQREIDKLRQ 1345
Cdd:PTZ00121 1219 ----KAEDAKKAEAVKKAEE-AKKDAEEAKK-------AEEERNNEEIRKFEE 1259
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
880-1127 |
5.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 880 DLEKQIKQLRNYRDNYQafcKWLYDAKRRQDSLESmkfgDSNTVMRFLNEQKNLHSEISGKRDKSEevQKIAELcANSIK 959
Cdd:COG4942 24 EAEAELEQLQQEIAELE---KELAALKKEEKALLK----QLAALERRIAALARRIRALEQELAALE--AELAEL-EKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 960 DYELQLASYTSGLETLLNIpIKRTMIQSPSGVILqeaadvHARYIELLTRSGDYYRFLSE-MLKSLEDLKLKNTKIEVLE 1038
Cdd:COG4942 94 ELRAELEAQKEELAELLRA-LYRLGRQPPLALLL------SPEDFLDAVRRLQYLKYLAPaRREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1039 EELRLARDAnsencnknkfLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELNEKITRLTYEI 1118
Cdd:COG4942 167 AELEAERAE----------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
....*....
gi 58530842 1119 EDEKRRRKS 1127
Cdd:COG4942 237 AAAAERTPA 245
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1004-1245 |
5.90e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1004 IELLTRSGDYYRFLSEMLKS----LEDLKlKNTKIEVLEEELRLARDANsencnknKFLDQnLQKYQAECS-----QFKA 1074
Cdd:PRK05771 9 VLIVTLKSYKDEVLEALHELgvvhIEDLK-EELSNERLRKLRSLLTKLS-------EALDK-LRSYLPKLNplreeKKKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1075 KLASLEELKrqaeldgKSAKQNLDKCYGQIKELNEKITRLTYEIEDEKRRRKSVEdRFdqqKN-DYDqLQKARQCE---- 1149
Cdd:PRK05771 80 SVKSLEELI-------KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE-PW---GNfDLD-LSLLLGFKyvsv 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1150 ------KENLGWQKLESEK----------------AIKEKEYEIERLRVLlQEEGTRKREYeNELAKASNRIQESKNQCT 1207
Cdd:PRK05771 148 fvgtvpEDKLEELKLESDVenveyistdkgyvyvvVVVLKELSDEVEEEL-KKLGFERLEL-EEEGTPSELIREIKEELE 225
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 58530842 1208 QVVQERESLLVKIKVLEQDKARLQR-----LEDELNRAKSTLE 1245
Cdd:PRK05771 226 EIEKERESLLEELKELAKKYLEELLalyeyLEIELERAEALSK 268
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1060-1345 |
6.40e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1060 QNLQKYQAECSQFKAKLASLEELKrqaelDGKSAKQNLDKCYGQIKELNEKitrltyEIEDEKRRRKSVEDRFDQQKNDY 1139
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIR-----DQITSKEAQLESSREIVKSYEN------ELDPLKNRLKEIEHNLSKIMKLD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1140 DQLQKARQCEKENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVK 1219
Cdd:TIGR00606 269 NEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1220 IKVL--------EQDKAR-LQRLEDELNRAKSTLE-----------AETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAI 1279
Cdd:TIGR00606 349 QGRLqlqadrhqEHIRARdSLIQSLATRLELDGFErgpfserqiknFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQA 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 58530842 1280 RKIESEREKSEREKNSLRSEIERLQAEIKRIeercRRKLEDSTRETQSQLETERS--RYQREIDKLRQ 1345
Cdd:TIGR00606 429 DEIRDEKKGLGRTIELKKEILEKKQEELKFV----IKELQQLEGSSDRILELDQElrKAERELSKAEK 492
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
853-1238 |
6.52e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 853 LGKFGEKV----TQLTDRWQRIDKQI---DFRLWDLEKQIKQLRNYRDNYQAFCKWLYDAKRRQDSLESMKFGDSNTVMR 925
Cdd:TIGR00618 540 LETSEEDVyhqlTSERKQRASLKEQMqeiQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 926 FLNEQKNLHSEISGKRDKSEEVQKiaELCAnsIKDYELQLAsYTSGLETLLNIpikrTMIQSPSGVILQEAADVHARYIE 1005
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQCSQELAL--KLTA--LHALQLTLT-QERVREHALSI----RVLPKELLASRQLALQKMQSEKE 690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1006 LLTRSGDYYRFLSEMLKSLEDLKLKNTKievLEEELRLARDANSENCN-KNKFLDQNLQKYQAecsQFKAKLASLEELKR 1084
Cdd:TIGR00618 691 QLTYWKEMLAQCQTLLRELETHIEEYDR---EFNEIENASSSLGSDLAaREDALNQSLKELMH---QARTVLKARTEAHF 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1085 QAELDGKSAKQNLDKcygqikelnekitrLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARqceKENLGWQKLESEKAI 1164
Cdd:TIGR00618 765 NNNEEVTAALQTGAE--------------LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEI---PSDEDILNLQCETLV 827
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 58530842 1165 KEKEYEIERLRVLLQEEGTRKREYEnELAKASNRIQESKNQCTQVVQERESLLVK-IKVLEQDKARLQRLEDELN 1238
Cdd:TIGR00618 828 QEEEQFLSRLEEKSATLGEITHQLL-KYEECSKQLAQLTQEQAKIIQLSDKLNGInQIKIQFDGDALIKFLHEIT 901
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1161-1345 |
7.27e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 7.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1161 EKAIKEKEYEIERlrvllqEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKIKVLEQdkaRLQRLEDELNRA 1240
Cdd:COG2433 383 EELIEKELPEEEP------EAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDE---RIERLERELSEA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1241 KSTLEAETRvkqrlecekqqiqndlnqwktqysrKEEAIRKiesereksereknsLRSEIERLQAEIKRIEERcRRKLED 1320
Cdd:COG2433 454 RSEERREIR-------------------------KDREISR--------------LDREIERLERELEEERER-IEELKR 493
|
170 180
....*....|....*....|....*
gi 58530842 1321 STRETQSQLETERSRYQREIDKLRQ 1345
Cdd:COG2433 494 KLERLKELWKLEHSGELVPVKVVEK 518
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
1054-1272 |
7.96e-03 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 40.40 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1054 KNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQ-------NLDKCYGQIKELNEKITRLTYEIEDEKRRRK 1126
Cdd:pfam00261 2 KMQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRriqlleeELERTEERLAEALEKLEEAEKAADESERGRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1127 SVEDR--FDQQKNDY--DQLQKARQCEKENLgwQKL-ESEKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQE 1201
Cdd:pfam00261 82 VLENRalKDEEKMEIleAQLKEAKEIAEEAD--RKYeEVARKLVVVEGDLERAEERAELAESKIVELEEELKVVGNNLKS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58530842 1202 SKNQCTQVVQERESLLVKIKVLEqdkarlQRLEDELNRAKstlEAETRVkQRLECEKQQIQNDLNQWKTQY 1272
Cdd:pfam00261 160 LEASEEKASEREDKYEEQIRFLT------EKLKEAETRAE---FAERSV-QKLEKEVDRLEDELEAEKEKY 220
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
870-1251 |
7.96e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.74 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 870 IDKQIDFRLWDLEKQIKQLRNYRDNYQAFCKWLYDAKRRQDSLESMKFGDSNTVMRfLNEQKNLHSEISGKRDKSEEVQK 949
Cdd:PTZ00440 444 IKKKYDEKINELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEK-VDELLQIINSIKEKNNIVNNNFK 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 950 iaelcanSIKDYELQLASYTsgLETLLNIPIKRTMIQSPSGVILQEAADvhARYIELLTRSGDYYRFLSEMLKSLEDLKL 1029
Cdd:PTZ00440 523 -------NIEDYYITIEGLK--NEIEGLIELIKYYLQSIETLIKDEKLK--RSMKNDIKNKIKYIEENVDHIKDIISLND 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1030 KNTKIEVLEEELRLARDANSENCNKNKFLDQNLQK------YQAECSQFKAKLASLEElKRQAELDGKSAKQNLDKCYGQ 1103
Cdd:PTZ00440 592 EIDNIIQQIEELINEALFNKEKFINEKNDLQEKVKyilnkfYKGDLQELLDELSHFLD-DHKYLYHEAKSKEDLQTLLNT 670
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1104 IKELNEKITRLTYEIEDE--KRRRKSVEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIK----EKEYEIERLRVL 1177
Cdd:PTZ00440 671 SKNEYEKLEFMKSDNIDNiiKNLKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKssieEYKEEEEKLEVY 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1178 LQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVK-------IKVLEQDKARLQRLEDELNRAKSTLEAETRV 1250
Cdd:PTZ00440 751 KHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKenkisndINILKENKKNNQDLLNSYNILIQKLEAHTEK 830
|
.
gi 58530842 1251 K 1251
Cdd:PTZ00440 831 N 831
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1210-1346 |
8.53e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1210 VQERESLLVKI-KVLEQDKARLQRLEDELNRAKSTLEAetrvkqrlecekqqIQNDLNQWKTQYSRKEEAIRKIESEREK 1288
Cdd:COG1579 12 LQELDSELDRLeHRLKELPAELAELEDELAALEARLEA--------------AKTELEDLEKEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 58530842 1289 SEREKNSLRS--EIERLQAEIKRIEERcRRKLEDSTRETQSQLETERSRYQREIDKLRQR 1346
Cdd:COG1579 78 YEEQLGNVRNnkEYEALQKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAEL 136
|
|
| |
