NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|14165469|ref|NP_001010|]
View 

small ribosomal subunit protein uS8 [Homo sapiens]

Protein Classification

uS8 family ribosomal protein( domain architecture ID 10015251)

uS8 family ribosomal protein is a component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell, such as mammalian 40S ribosomal protein S15a and fungal 40S ribosomal protein S22

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


:

Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 14165469   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 14165469   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 5.97e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 119.76  E-value: 5.97e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 14165469  81 VQLKDLE---KWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 1.63e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 93.24  E-value: 1.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469     7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVIS-------P- 77
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPg 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 14165469    78 -RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  80 lRVYVGKDELPRVLNGL------GIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 14165469   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 2.87e-84

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 242.21  E-value: 2.87e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 14165469   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-128 9.54e-64

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 190.05  E-value: 9.54e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PRK04034   1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 14165469   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:PRK04034  81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAY 128
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 5.97e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 119.76  E-value: 5.97e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 14165469  81 VQLKDLE---KWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 1.63e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 93.24  E-value: 1.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469     7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVIS-------P- 77
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPg 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 14165469    78 -RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  80 lRVYVGKDELPRVLNGL------GIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 7-126 2.74e-15

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 67.00  E-value: 2.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNL---------TG--RLNKCGVi 75
Cdd:PRK00136   6 IADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygegepviEGikRVSKPGL- 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 14165469   76 spRFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:PRK00136  84 --RVYKKKDELPKVLNGL------GIAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 1-126 1.20e-08

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 49.78  E-value: 1.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14165469    1 MVRmNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV------ 74
Cdd:CHL00042   1 MGN-DTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPyittlk 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 14165469   75 -IS-P--RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:CHL00042  79 rISkPglRIYSNYKEIPRVLGGM------GIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH