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Conserved domains on  [gi|58865392|ref|NP_001011911|]
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cell growth-regulating nucleolar protein [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-LYAR pfam08790
LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss: ...
 31-58 4.50e-15

LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss:Q08288 which are involved in cell growth regulation.


:

Pssm-ID: 462605  Cd Length: 28  Bit Score: 68.24  E-value: 4.50e-15
                          10        20
                  ....*....|....*....|....*...
gi 58865392    31 LSCIDCGKDFWGDDYKNHVKCISEDQKY 58
Cdd:pfam08790   1 FSCIDCSKTFDGDDYKAHTSCITEAEKY 28
zf-ACC super family cl39333
Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic ...
 3-28 1.10e-04

Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic enzyme that catalyzes the committed step in fatty acid biosynthesis: biotin- dependent conversion of acetyl-coA to malonyl-coA. In bacteria this protein contains a small zinc finger domain.


The actual alignment was detected with superfamily member pfam17848:

Pssm-ID: 436090 [Multi-domain]  Cd Length: 26  Bit Score: 38.74  E-value: 1.10e-04
                          10        20
                  ....*....|....*....|....*.
gi 58865392     3 FFTCNACGESVKKIQVEKHVSICRNC 28
Cdd:pfam17848   1 WIKCPSCGEILYRKDLERNLSVCPKC 26
PHA03169 super family cl27451
hypothetical protein; Provisional
 145-311 4.29e-03

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 38.80  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  145 QDQQPPSHMAKPNTEVPTKVPSTKTNGTTEEQTEAKKNKRERKEERQKSRKKEKKELKLENHQENLKGQKPKKRKKGQEA 224
Cdd:PHA03169  26 HGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTP 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  225 GH-EAGGEDAAEANGAPEKKRARDAQASEEGADRNGGPAEDADEGPTKTAAGKRKRQKHSEVESDNKKKKMKLPGQPEEG 303
Cdd:PHA03169 106 SPsGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185


                 ....*...
gi 58865392  304 EPEDHEAP 311
Cdd:PHA03169 186 EPDSPGPP 193
 
Name Accession Description Interval E-value
zf-LYAR pfam08790
LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss: ...
 31-58 4.50e-15

LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss:Q08288 which are involved in cell growth regulation.


Pssm-ID: 462605  Cd Length: 28  Bit Score: 68.24  E-value: 4.50e-15
                          10        20
                  ....*....|....*....|....*...
gi 58865392    31 LSCIDCGKDFWGDDYKNHVKCISEDQKY 58
Cdd:pfam08790   1 FSCIDCSKTFDGDDYKAHTSCITEAEKY 28
zf-ACC pfam17848
Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic ...
 3-28 1.10e-04

Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic enzyme that catalyzes the committed step in fatty acid biosynthesis: biotin- dependent conversion of acetyl-coA to malonyl-coA. In bacteria this protein contains a small zinc finger domain.


Pssm-ID: 436090 [Multi-domain]  Cd Length: 26  Bit Score: 38.74  E-value: 1.10e-04
                          10        20
                  ....*....|....*....|....*.
gi 58865392     3 FFTCNACGESVKKIQVEKHVSICRNC 28
Cdd:pfam17848   1 WIKCPSCGEILYRKDLERNLSVCPKC 26
PHA03169 PHA03169
hypothetical protein; Provisional
 145-311 4.29e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 38.80  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  145 QDQQPPSHMAKPNTEVPTKVPSTKTNGTTEEQTEAKKNKRERKEERQKSRKKEKKELKLENHQENLKGQKPKKRKKGQEA 224
Cdd:PHA03169  26 HGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTP 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  225 GH-EAGGEDAAEANGAPEKKRARDAQASEEGADRNGGPAEDADEGPTKTAAGKRKRQKHSEVESDNKKKKMKLPGQPEEG 303
Cdd:PHA03169 106 SPsGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185


                 ....*...
gi 58865392  304 EPEDHEAP 311
Cdd:PHA03169 186 EPDSPGPP 193
 
Name Accession Description Interval E-value
zf-LYAR pfam08790
LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss: ...
 31-58 4.50e-15

LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins such as Swiss:Q08288 which are involved in cell growth regulation.


Pssm-ID: 462605  Cd Length: 28  Bit Score: 68.24  E-value: 4.50e-15
                          10        20
                  ....*....|....*....|....*...
gi 58865392    31 LSCIDCGKDFWGDDYKNHVKCISEDQKY 58
Cdd:pfam08790   1 FSCIDCSKTFDGDDYKAHTSCITEAEKY 28
zf-ACC pfam17848
Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic ...
 3-28 1.10e-04

Acetyl-coA carboxylase zinc finger domain; Acetyl-coA carboxylase (ACC) is a central metabolic enzyme that catalyzes the committed step in fatty acid biosynthesis: biotin- dependent conversion of acetyl-coA to malonyl-coA. In bacteria this protein contains a small zinc finger domain.


Pssm-ID: 436090 [Multi-domain]  Cd Length: 26  Bit Score: 38.74  E-value: 1.10e-04
                          10        20
                  ....*....|....*....|....*.
gi 58865392     3 FFTCNACGESVKKIQVEKHVSICRNC 28
Cdd:pfam17848   1 WIKCPSCGEILYRKDLERNLSVCPKC 26
PHA03169 PHA03169
hypothetical protein; Provisional
 145-311 4.29e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 38.80  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  145 QDQQPPSHMAKPNTEVPTKVPSTKTNGTTEEQTEAKKNKRERKEERQKSRKKEKKELKLENHQENLKGQKPKKRKKGQEA 224
Cdd:PHA03169  26 HGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTP 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58865392  225 GH-EAGGEDAAEANGAPEKKRARDAQASEEGADRNGGPAEDADEGPTKTAAGKRKRQKHSEVESDNKKKKMKLPGQPEEG 303
Cdd:PHA03169 106 SPsGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185


                 ....*...
gi 58865392  304 EPEDHEAP 311
Cdd:PHA03169 186 EPDSPGPP 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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