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Conserved domains on  [gi|4506693|ref|NP_001012|]
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small ribosomal subunit protein eS17 [Homo sapiens]

Protein Classification

eS17 family ribosomal protein( domain architecture ID 10467170)

eS17 family ribosomal protein is a component of the small ribosomal subunit.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-122 1.56e-89

Ribosomal S17;


:

Pssm-ID: 425895  Cd Length: 122  Bit Score: 255.25  E-value: 1.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506693      1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER 80
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 4506693     81 RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
Cdd:pfam00833  81 RDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGNLPNLQVTQP 122
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-122 1.56e-89

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 255.25  E-value: 1.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506693      1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER 80
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 4506693     81 RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
Cdd:pfam00833  81 RDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGNLPNLQVTQP 122
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
1-133 6.51e-75

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 218.74  E-value: 6.51e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506693     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER 80
Cdd:PTZ00154   1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERER 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 4506693    81 RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRG 133
Cdd:PTZ00154  81 RMDYVPEKSEVDIDNITVDQDTKDMLKSLGLGVPRPVKVPDVARKKQKQARRR 133
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-63 4.44e-20

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 77.59  E-value: 4.44e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 4506693    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQR 63
Cdd:COG1383   1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-122 1.56e-89

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 255.25  E-value: 1.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506693      1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER 80
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 4506693     81 RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
Cdd:pfam00833  81 RDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGNLPNLQVTQP 122
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
1-133 6.51e-75

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 218.74  E-value: 6.51e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4506693     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER 80
Cdd:PTZ00154   1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERER 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 4506693    81 RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRG 133
Cdd:PTZ00154  81 RMDYVPEKSEVDIDNITVDQDTKDMLKSLGLGVPRPVKVPDVARKKQKQARRR 133
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-63 4.44e-20

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 77.59  E-value: 4.44e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 4506693    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQR 63
Cdd:COG1383   1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
rps17E PRK01151
30S ribosomal protein S17e; Validated
2-59 3.10e-19

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 75.29  E-value: 3.10e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 4506693     2 GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMK 59
Cdd:PRK01151   1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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