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Conserved domains on  [gi|90991706|ref|NP_001028433|]
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zinc finger C3H1 domain-containing protein [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1367-1698 6.72e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 6.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1367 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 1446
Cdd:COG2956   11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1447 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 1525
Cdd:COG2956   83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1526 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 1605
Cdd:COG2956  150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1606 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 1685
Cdd:COG2956  179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                        330
                 ....*....|...
gi 90991706 1686 QDGGDKLLPVLRQ 1698
Cdd:COG2956  258 KEGLEAALALLER 270
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 826-1000 4.72e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 4.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  826 TKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMFLKKLQEQIHRVQQR 905
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  906 VTIKKaltlkygEELARAKAVASKeLGKRKLEQDRLGPN------KMMRLDNSpISSPRKHSAELIAMEKRRLQKLEYEY 979
Cdd:COG4942   99 LEAQK-------EELAELLRALYR-LGRQPPLALLLSPEdfldavRRLQYLKY-LAPARREQAEELRADLAELAALRAEL 169

                        170       180
                 ....*....|....*....|.
gi 90991706  980 ALKIQKLKEARALKAKEQQNL 1000
Cdd:COG4942  170 EAERAELEALLAELEEERAAL 190
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 1188-1207 9.31e-06

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


:

Pssm-ID: 431418  Cd Length: 22  Bit Score: 43.72  E-value: 9.31e-06
                           10        20
                   ....*....|....*....|.
gi 90991706   1188 FCRFDLTG-TCNDDDCQWQHV 1207
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
PTZ00121 super family cl31754
MAEBL; Provisional
 743-1096 1.80e-05

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   743 EARRTAEQASKPKVPPKseKENDPLRTPEA----LPEEKKMEYRLLKEEIANREKQRLIKSDQLKTSssspANSDVEMDG 818
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDK--KKADELKKAAAakkkADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK----AEEAKKAEE 1461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   819 IGRIAMVTKQVADAEAKLKKHKilliKDESVLKNLvlQEAKKK--ESVRNAEAKitKLTEQLQAAEKILSANRmfLKKLQ 896
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAK----KADEAKKKA--EEAKKKadEAKKAAEAK--KKADEAKKAEEAKKADE--AKKAE 1531

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   897 E--QIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNK---MMRLDNSPISSPRKHSAELIAMEKRR 971
Cdd:PTZ00121 1532 EakKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeAKKAEEARIEEVMKLYEEEKKMKAEE 1611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   972 LQKLEyEYALKIQKLKEARALKAKEQQNLVPVVEEEPEfsvpqpslhdltQDKLTLDTEENDVDDEVLSGASRERRRSFL 1051
Cdd:PTZ00121 1612 AKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------------AEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 90991706  1052 ESNSFTKPNLKHTDTPNKECINKLSKSTVEKPELFLGLKIGELQK 1096
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
SMC_N super family cl47134
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 201-997 2.54e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


The actual alignment was detected with superfamily member pfam02463:

Pssm-ID: 481474 [Multi-domain]  Cd Length: 1161  Bit Score: 49.58  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    201 RKSSKSFGRSPSRKQNHSSKSENCAEETFEDLLLKYKQIQLELEciNKDEKLALSSKEETAQEdpKTLHLEDQTSTDNAS 280
Cdd:pfam02463  239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK--LQEEELKLLAKEEEELK--SELLKLERRKVDDEE 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    281 ITKDPSKEVAPEEKTQVKTFQAFELKpLRQKLTLPGDKNRVKRGKDGTRQLSLKSSTtdASQGLEDKEQNLTRRLSASDI 360
Cdd:pfam02463  315 KLKESEKEKKKAEKELKKEKEEIEEL-EKELKELEIKREAEEEEEEELEKLQEKLEQ--LEEELLAKKKLESERLSSAAK 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    361 VSEKKLGEEEEELSelqlrllALQSASKKWQQKEQQVMKESKEKLTKTKTaQQKAKTSTKAHSAKKVSATAKQALRKQQT 440
Cdd:pfam02463  392 LKEEELELKSEEEK-------EAQLLLELARQLEDLLKEEKKEELEILEE-EEESIELKQGKLTEEKEELEKQELKLLKD 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    441 KAWKKLQQQKEQERQKEEDQRKHAEEEERRKREEEIRKirdLSNQEEQYNRFMKLVGGKRRARSKSSDPDLRRSLEKQSD 520
Cdd:pfam02463  464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK---ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    521 SAGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFPECSLGYFSSAPSVSLPPPAQVSSVPSLNQPYGEGLCVSLDPLPP 600
Cdd:pfam02463  541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK 620

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    601 LPPLPPLPPEDPEQPPKPPFADEEEEEEMLLreellKSLASKRAFKpeETSSNSDPPSPPVLNNSQPLSRSNLSIVSINT 680
Cdd:pfam02463  621 RAKVVEGILKDTELTKLKESAKAKESGLRKG-----VSLEEGLAEK--SEVKASLSELTKELLEIQELQEKAESELAKEE 693

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    681 V-SQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKSTNSVFGG-LESMIKEARRTAEQASKPKVPP 758
Cdd:pfam02463  694 IlRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKE 773

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    759 KSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRLIK------SDQLKTSSSSPANSDVEMDGIGRIAMVTKQVADA 832
Cdd:pfam02463  774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEaelleeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    833 EAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMflkkLQEQIHRVQQRVTIKKAL 912
Cdd:pfam02463  854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL----LEEKENEIEERIKEEAEI 929

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    913 TLKYGEELARAKAVASKElgKRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIaMEKRRLQKLEYEYALKIQKLKEARAL 992
Cdd:pfam02463  930 LLKYEEEPEELLLEEADE--KEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEKKK 1006


                   ....*
gi 90991706    993 KAKEQ 997
Cdd:pfam02463 1007 LIRAI 1011
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1367-1698 6.72e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 6.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1367 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 1446
Cdd:COG2956   11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1447 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 1525
Cdd:COG2956   83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1526 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 1605
Cdd:COG2956  150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1606 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 1685
Cdd:COG2956  179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                        330
                 ....*....|...
gi 90991706 1686 QDGGDKLLPVLRQ 1698
Cdd:COG2956  258 KEGLEAALALLER 270
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 826-1000 4.72e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 4.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  826 TKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMFLKKLQEQIHRVQQR 905
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  906 VTIKKaltlkygEELARAKAVASKeLGKRKLEQDRLGPN------KMMRLDNSpISSPRKHSAELIAMEKRRLQKLEYEY 979
Cdd:COG4942   99 LEAQK-------EELAELLRALYR-LGRQPPLALLLSPEdfldavRRLQYLKY-LAPARREQAEELRADLAELAALRAEL 169

                        170       180
                 ....*....|....*....|.
gi 90991706  980 ALKIQKLKEARALKAKEQQNL 1000
Cdd:COG4942  170 EAERAELEALLAELEEERAAL 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 737-1009 5.55e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 5.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    737 LESMIKEARRTAEQASKpkvppKSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRLIKSDQLKTSSSSPANSDVEM 816
Cdd:TIGR02168  710 LEEELEQLRKELEELSR-----QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    817 --------DGIGRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSAN 888
Cdd:TIGR02168  785 eeleaqieQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    889 RMFLKKLQEQIHRVQQRVtikkaltlkygEELARAKAVASKELGKRKLEQDRLGpNKMMRLDNSpisspRKHSAELIAME 968
Cdd:TIGR02168  865 EELIEELESELEALLNER-----------ASLEEALALLRSELEELSEELRELE-SKRSELRRE-----LEELREKLAQL 927

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 90991706    969 KRRLQKLEYEYALKIQKLKEARALKAKEQQNLVPVVEEEPE 1009
Cdd:TIGR02168  928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 1188-1207 9.31e-06

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


Pssm-ID: 431418  Cd Length: 22  Bit Score: 43.72  E-value: 9.31e-06
                           10        20
                   ....*....|....*....|.
gi 90991706   1188 FCRFDLTG-TCNDDDCQWQHV 1207
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
PTZ00121 PTZ00121
MAEBL; Provisional
 742-1079 1.61e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   742 KEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRliKSDQLKTSSSSPANSDVEMDGIGR 821
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAK 1570

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   822 IAMVTKQVADAEAKLKKhKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKlTEQLQAAEKILSANRMFLKKLQEQihr 901
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAEE--- 1645

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   902 vqqrvtIKKALTLKYGEELARAKavasKELGKRKLEQDRLGPNKMMRLDNSpisspRKHSAELIAMEKRRLQKLEYEYAL 981
Cdd:PTZ00121 1646 ------KKKAEELKKAEEENKIK----AAEEAKKAEEDKKKAEEAKKAEED-----EKKAAEALKKEAEEAKKAEELKKK 1710

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   982 KIQKLKEARALKAKEQQNLVPVVEEEPEFSVPQPSLHDLTQDKltldtEENDVDDEVLSGASRERRRSFLESNSFTKPNL 1061
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE-----EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785

                         330
                  ....*....|....*...
gi 90991706  1062 KHTDTPNKECINKLSKST 1079
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDI 1803
PTZ00121 PTZ00121
MAEBL; Provisional
 743-1096 1.80e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   743 EARRTAEQASKPKVPPKseKENDPLRTPEA----LPEEKKMEYRLLKEEIANREKQRLIKSDQLKTSssspANSDVEMDG 818
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDK--KKADELKKAAAakkkADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK----AEEAKKAEE 1461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   819 IGRIAMVTKQVADAEAKLKKHKilliKDESVLKNLvlQEAKKK--ESVRNAEAKitKLTEQLQAAEKILSANRmfLKKLQ 896
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAK----KADEAKKKA--EEAKKKadEAKKAAEAK--KKADEAKKAEEAKKADE--AKKAE 1531

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   897 E--QIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNK---MMRLDNSPISSPRKHSAELIAMEKRR 971
Cdd:PTZ00121 1532 EakKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeAKKAEEARIEEVMKLYEEEKKMKAEE 1611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   972 LQKLEyEYALKIQKLKEARALKAKEQQNLVPVVEEEPEfsvpqpslhdltQDKLTLDTEENDVDDEVLSGASRERRRSFL 1051
Cdd:PTZ00121 1612 AKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------------AEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 90991706  1052 ESNSFTKPNLKHTDTPNKECINKLSKSTVEKPELFLGLKIGELQK 1096
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 201-997 2.54e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.58  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    201 RKSSKSFGRSPSRKQNHSSKSENCAEETFEDLLLKYKQIQLELEciNKDEKLALSSKEETAQEdpKTLHLEDQTSTDNAS 280
Cdd:pfam02463  239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK--LQEEELKLLAKEEEELK--SELLKLERRKVDDEE 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    281 ITKDPSKEVAPEEKTQVKTFQAFELKpLRQKLTLPGDKNRVKRGKDGTRQLSLKSSTtdASQGLEDKEQNLTRRLSASDI 360
Cdd:pfam02463  315 KLKESEKEKKKAEKELKKEKEEIEEL-EKELKELEIKREAEEEEEEELEKLQEKLEQ--LEEELLAKKKLESERLSSAAK 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    361 VSEKKLGEEEEELSelqlrllALQSASKKWQQKEQQVMKESKEKLTKTKTaQQKAKTSTKAHSAKKVSATAKQALRKQQT 440
Cdd:pfam02463  392 LKEEELELKSEEEK-------EAQLLLELARQLEDLLKEEKKEELEILEE-EEESIELKQGKLTEEKEELEKQELKLLKD 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    441 KAWKKLQQQKEQERQKEEDQRKHAEEEERRKREEEIRKirdLSNQEEQYNRFMKLVGGKRRARSKSSDPDLRRSLEKQSD 520
Cdd:pfam02463  464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK---ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    521 SAGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFPECSLGYFSSAPSVSLPPPAQVSSVPSLNQPYGEGLCVSLDPLPP 600
Cdd:pfam02463  541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK 620

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    601 LPPLPPLPPEDPEQPPKPPFADEEEEEEMLLreellKSLASKRAFKpeETSSNSDPPSPPVLNNSQPLSRSNLSIVSINT 680
Cdd:pfam02463  621 RAKVVEGILKDTELTKLKESAKAKESGLRKG-----VSLEEGLAEK--SEVKASLSELTKELLEIQELQEKAESELAKEE 693

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    681 V-SQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKSTNSVFGG-LESMIKEARRTAEQASKPKVPP 758
Cdd:pfam02463  694 IlRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKE 773

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    759 KSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRLIK------SDQLKTSSSSPANSDVEMDGIGRIAMVTKQVADA 832
Cdd:pfam02463  774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEaelleeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    833 EAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMflkkLQEQIHRVQQRVTIKKAL 912
Cdd:pfam02463  854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL----LEEKENEIEERIKEEAEI 929

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    913 TLKYGEELARAKAVASKElgKRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIaMEKRRLQKLEYEYALKIQKLKEARAL 992
Cdd:pfam02463  930 LLKYEEEPEELLLEEADE--KEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEKKK 1006


                   ....*
gi 90991706    993 KAKEQ 997
Cdd:pfam02463 1007 LIRAI 1011
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 736-1034 1.60e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 46.43  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    736 GLESMIKEARRTAEQaSKPKVPPKSEKENDPLRTPEALPEEKKMeyrLLKEEIANREKQRLIKSDqLKTSSSSPANSDVE 815
Cdd:pfam07888   77 ELESRVAELKEELRQ-SREKHEELEEKYKELSASSEELSEEKDA---LLAQRAAHEARIRELEED-IKTLTQRVLERETE 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    816 MDGIG-RIAMVTKQVADAEAKLKKHKILLIKDESVLKNLV--LQEAKKKESVRNAEA-----KITKLTEQLQAAEKILSA 887
Cdd:pfam07888  152 LERMKeRAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSkeFQELRNSLAQRDTQVlqlqdTITTLTQKLTTAHRKEAE 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    888 NRMFLKKL---QEQIHRVQQRVTIkkaltlkYGEELAraKAVASKELGKRKLEQDRLGPNKM----------MRLDNSPI 954
Cdd:pfam07888  232 NEALLEELrslQERLNASERKVEG-------LGEELS--SMAAQRDRTQAELHQARLQAAQLtlqladaslaLREGRARW 302

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    955 SSPRKHSAELIAMEKRRLQKLEYEYALKIQKLKEARALKAK--------EQQNLVPVVEEEPEFSVPQPSLHDLTQDKLT 1026
Cdd:pfam07888  303 AQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKlevelgreKDCNRVQLSESRRELQELKASLRVAQKEKEQ 382


                   ....*...
gi 90991706   1027 LDTEENDV 1034
Cdd:pfam07888  383 LQAEKQEL 390
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1620-1670 3.89e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 3.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 90991706 1620 RYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 1670
Cdd:cd24142   15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1353-1681 4.82e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 4.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1353 LEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVE 1432
Cdd:TIGR02917  556 LEKAAELNPQEIEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1433 YAPD-----------YQSF------WTFLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLE------ALLFRV- 1488
Cdd:TIGR02917  630 LQPDsalalllladaYAVMknyakaITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQkqhpkaALGFELe 709

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1489 -QLHIFTGRCQSALAVLQNALKLANDAIVAEYL-----------KTDDRCLAWLAyihliefnslpsklyDPSNANPSRI 1556
Cdd:TIGR02917  710 gDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasgntaEAVKTLEAWLK---------------THPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1557 VNTEPFVMPWQAAQDVKtnpdlllaVFEDAVKACTDetltsgerievclplytNMIALHQL----LERYE-EAVELCTSL 1631
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIK--------HYQTVVKKAPD-----------------NAVVLNNLawlyLELKDpRALEYAERA 829

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 90991706   1632 LESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCK 1681
Cdd:TIGR02917  830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
TPR_12 pfam13424
Tetratricopeptide repeat;
1607-1660 6.40e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 6.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90991706   1607 LYTNMIALHQLLERYEEAVELCTSLLESC--------PTNCQLLETLAALYLKTDRYDKARR 1660
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALE 66
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1367-1698 6.72e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 6.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1367 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 1446
Cdd:COG2956   11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1447 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 1525
Cdd:COG2956   83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1526 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 1605
Cdd:COG2956  150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1606 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 1685
Cdd:COG2956  179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                        330
                 ....*....|...
gi 90991706 1686 QDGGDKLLPVLRQ 1698
Cdd:COG2956  258 KEGLEAALALLER 270
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1350-1444 1.26e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 1.26e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGR------YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76

                         90
                 ....*....|....*
gi 90991706 1430 AVEYAPDYQSFWTFL 1444
Cdd:COG4235   77 ALALDPDNPEALYLL 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1566-1698 7.99e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 7.99e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1566 WQAAQDVKTNPDLLLAVFEDAVKACTDETLTSGERIEVCLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETL 1645
Cdd:COG5010   15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 90991706 1646 AALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDKLLPVLRQ 1698
Cdd:COG5010   95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1575-1700 9.59e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 9.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1575 NPDLLLAVFEDAVKACTDEtltsgerievcLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDR 1654
Cdd:COG2956   23 QPDKAIDLLEEALELDPET-----------VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 90991706 1655 YDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDKLLPVLRQFV 1700
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1608-1698 2.31e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 2.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1608 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQD 1687
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                         90
                 ....*....|.
gi 90991706 1688 GGDKLLPVLRQ 1698
Cdd:COG0457  159 RYEEALELLEK 169
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1604-1690 4.65e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 4.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1604 CLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCkfF 1683
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG--N 188


                 ....*..
gi 90991706 1684 ILQDGGD 1690
Cdd:COG3914  189 ALQDLGR 195
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1605-1690 4.81e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 4.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1605 LPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCkfFI 1684
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL--FA 223


                 ....*.
gi 90991706 1685 LQDGGD 1690
Cdd:COG3914  224 LRQACD 229
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1608-1679 6.41e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 6.41e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90991706 1608 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 1679
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1604-1698 1.15e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 1.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1604 CLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFF 1683
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90
                 ....*....|....*
gi 90991706 1684 ILQDGGDKLLPVLRQ 1698
Cdd:COG4783   83 LKAGDYDEALALLEK 97
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1613-1723 1.22e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1613 ALHQLL-ERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDK 1691
Cdd:COG2956   15 GLNYLLnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 90991706 1692 LLPVLRQFVGsffkpgfEKYSNVDLFRYLLNI 1723
Cdd:COG2956   95 AEELLEKLLE-------LDPDDAEALRLLAEI 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1350-1520 1.40e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 1.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLAEIYEQEGD------WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1430 AVEYAPDYQSFWTFL-HLEstFEEKDYvcERMVEFLMGAAKREISDilsfqlLEALLFRVQLHIFTGRCQSALAVLQNAL 1508
Cdd:COG2956  170 ALKLDPDCARALLLLaELY--LEQGDY--EEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKAL 239

                        170
                 ....*....|..
gi 90991706 1509 KLANDAIVAEYL 1520
Cdd:COG2956  240 ELDPSDDLLLAL 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1608-1679 2.20e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.20e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90991706 1608 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 1679
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1609-1679 2.23e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 2.23e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 90991706 1609 TNMIALHQL------LERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 1679
Cdd:COG4783   36 DNPEAFALLgeillqLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1350-1535 3.36e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 3.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG0457   62 LADYEQALELDPDDAEALNNLGLALQALGR------YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1430 AVEYAPDYQSFWT----FLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLEALLFRVQLHIFTGRCQSALAVLQ 1505
Cdd:COG0457  136 ALELDPDDADALYnlgiALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 90991706 1506 NALKLANDAIVAEYLKTDDRCLAWLAYIHL 1535
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 826-1000 4.72e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 4.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  826 TKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMFLKKLQEQIHRVQQR 905
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  906 VTIKKaltlkygEELARAKAVASKeLGKRKLEQDRLGPN------KMMRLDNSpISSPRKHSAELIAMEKRRLQKLEYEY 979
Cdd:COG4942   99 LEAQK-------EELAELLRALYR-LGRQPPLALLLSPEdfldavRRLQYLKY-LAPARREQAEELRADLAELAALRAEL 169

                        170       180
                 ....*....|....*....|.
gi 90991706  980 ALKIQKLKEARALKAKEQQNL 1000
Cdd:COG4942  170 EAERAELEALLAELEEERAAL 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 737-1009 5.55e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 5.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    737 LESMIKEARRTAEQASKpkvppKSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRLIKSDQLKTSSSSPANSDVEM 816
Cdd:TIGR02168  710 LEEELEQLRKELEELSR-----QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    817 --------DGIGRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSAN 888
Cdd:TIGR02168  785 eeleaqieQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    889 RMFLKKLQEQIHRVQQRVtikkaltlkygEELARAKAVASKELGKRKLEQDRLGpNKMMRLDNSpisspRKHSAELIAME 968
Cdd:TIGR02168  865 EELIEELESELEALLNER-----------ASLEEALALLRSELEELSEELRELE-SKRSELRRE-----LEELREKLAQL 927

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 90991706    969 KRRLQKLEYEYALKIQKLKEARALKAKEQQNLVPVVEEEPE 1009
Cdd:TIGR02168  928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 1188-1207 9.31e-06

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


Pssm-ID: 431418  Cd Length: 22  Bit Score: 43.72  E-value: 9.31e-06
                           10        20
                   ....*....|....*....|.
gi 90991706   1188 FCRFDLTG-TCNDDDCQWQHV 1207
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1350-1437 1.31e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 1.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG4783   58 IVLLHEALELDPDEPEARLNLGLALLKAGD------YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131


                 ....*...
gi 90991706 1430 AVEYAPDY 1437
Cdd:COG4783  132 ALELDPDD 139
PTZ00121 PTZ00121
MAEBL; Provisional
 742-1079 1.61e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   742 KEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRliKSDQLKTSSSSPANSDVEMDGIGR 821
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAK 1570

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   822 IAMVTKQVADAEAKLKKhKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKlTEQLQAAEKILSANRMFLKKLQEQihr 901
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAEE--- 1645

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   902 vqqrvtIKKALTLKYGEELARAKavasKELGKRKLEQDRLGPNKMMRLDNSpisspRKHSAELIAMEKRRLQKLEYEYAL 981
Cdd:PTZ00121 1646 ------KKKAEELKKAEEENKIK----AAEEAKKAEEDKKKAEEAKKAEED-----EKKAAEALKKEAEEAKKAEELKKK 1710

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   982 KIQKLKEARALKAKEQQNLVPVVEEEPEFSVPQPSLHDLTQDKltldtEENDVDDEVLSGASRERRRSFLESNSFTKPNL 1061
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE-----EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785

                         330
                  ....*....|....*...
gi 90991706  1062 KHTDTPNKECINKLSKST 1079
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDI 1803
PTZ00121 PTZ00121
MAEBL; Provisional
 743-1096 1.80e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   743 EARRTAEQASKPKVPPKseKENDPLRTPEA----LPEEKKMEYRLLKEEIANREKQRLIKSDQLKTSssspANSDVEMDG 818
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDK--KKADELKKAAAakkkADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK----AEEAKKAEE 1461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   819 IGRIAMVTKQVADAEAKLKKHKilliKDESVLKNLvlQEAKKK--ESVRNAEAKitKLTEQLQAAEKILSANRmfLKKLQ 896
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAK----KADEAKKKA--EEAKKKadEAKKAAEAK--KKADEAKKAEEAKKADE--AKKAE 1531

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   897 E--QIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNK---MMRLDNSPISSPRKHSAELIAMEKRR 971
Cdd:PTZ00121 1532 EakKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeAKKAEEARIEEVMKLYEEEKKMKAEE 1611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   972 LQKLEyEYALKIQKLKEARALKAKEQQNLVPVVEEEPEfsvpqpslhdltQDKLTLDTEENDVDDEVLSGASRERRRSFL 1051
Cdd:PTZ00121 1612 AKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------------AEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 90991706  1052 ESNSFTKPNLKHTDTPNKECINKLSKSTVEKPELFLGLKIGELQK 1096
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 201-997 2.54e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.58  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    201 RKSSKSFGRSPSRKQNHSSKSENCAEETFEDLLLKYKQIQLELEciNKDEKLALSSKEETAQEdpKTLHLEDQTSTDNAS 280
Cdd:pfam02463  239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK--LQEEELKLLAKEEEELK--SELLKLERRKVDDEE 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    281 ITKDPSKEVAPEEKTQVKTFQAFELKpLRQKLTLPGDKNRVKRGKDGTRQLSLKSSTtdASQGLEDKEQNLTRRLSASDI 360
Cdd:pfam02463  315 KLKESEKEKKKAEKELKKEKEEIEEL-EKELKELEIKREAEEEEEEELEKLQEKLEQ--LEEELLAKKKLESERLSSAAK 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    361 VSEKKLGEEEEELSelqlrllALQSASKKWQQKEQQVMKESKEKLTKTKTaQQKAKTSTKAHSAKKVSATAKQALRKQQT 440
Cdd:pfam02463  392 LKEEELELKSEEEK-------EAQLLLELARQLEDLLKEEKKEELEILEE-EEESIELKQGKLTEEKEELEKQELKLLKD 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    441 KAWKKLQQQKEQERQKEEDQRKHAEEEERRKREEEIRKirdLSNQEEQYNRFMKLVGGKRRARSKSSDPDLRRSLEKQSD 520
Cdd:pfam02463  464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK---ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    521 SAGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFPECSLGYFSSAPSVSLPPPAQVSSVPSLNQPYGEGLCVSLDPLPP 600
Cdd:pfam02463  541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK 620

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    601 LPPLPPLPPEDPEQPPKPPFADEEEEEEMLLreellKSLASKRAFKpeETSSNSDPPSPPVLNNSQPLSRSNLSIVSINT 680
Cdd:pfam02463  621 RAKVVEGILKDTELTKLKESAKAKESGLRKG-----VSLEEGLAEK--SEVKASLSELTKELLEIQELQEKAESELAKEE 693

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    681 V-SQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKSTNSVFGG-LESMIKEARRTAEQASKPKVPP 758
Cdd:pfam02463  694 IlRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKE 773

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    759 KSEKENDPLRTPEALPEEKKMEYRLLKEEIANREKQRLIK------SDQLKTSSSSPANSDVEMDGIGRIAMVTKQVADA 832
Cdd:pfam02463  774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEaelleeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    833 EAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMflkkLQEQIHRVQQRVTIKKAL 912
Cdd:pfam02463  854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL----LEEKENEIEERIKEEAEI 929

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    913 TLKYGEELARAKAVASKElgKRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIaMEKRRLQKLEYEYALKIQKLKEARAL 992
Cdd:pfam02463  930 LLKYEEEPEELLLEEADE--KEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEKKK 1006


                   ....*
gi 90991706    993 KAKEQ 997
Cdd:pfam02463 1007 LIRAI 1011
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1612-1700 2.62e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 2.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1612 IALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDK 1691
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164


                 ....*....
gi 90991706 1692 LLPVLRQFV 1700
Cdd:COG3914  165 AIAALRRAL 173
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1350-1444 2.71e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 2.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG4783   24 EALLEKALELDPDNPEAFALLGEILLQLGD------LDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                         90
                 ....*....|....*
gi 90991706 1430 AVEYAPDYQSFWTFL 1444
Cdd:COG4783   98 ALKLDPEHPEAYLRL 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1350-1441 2.83e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 2.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG3914   98 LALYRRALALNPDNAEALFNLGNLLLALGR------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                         90
                 ....*....|..
gi 90991706 1430 AVEYAPDYQSFW 1441
Cdd:COG3914  172 ALELDPDNAEAL 183
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1350-1537 2.85e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 2.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG0457   28 IEDYEKALELDPDDAEALYNLGLAYLRLGR------YEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1430 AVEYAPDYQSFWTFLHLeSTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALK 1509
Cdd:COG0457  102 ALELDPDDAEALYNLGL-ALLELGRY--DEAIEAYERALELDPDDA------DALYNLGIALEKLGRYEEALELLEKLEA 172

                        170       180
                 ....*....|....*....|....*...
gi 90991706 1510 LANDAIVAEYLKTDDRCLAWLAYIHLIE 1537
Cdd:COG0457  173 AALAALLAAALGEAALALAAAEVLLALL 200
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1607-1670 3.20e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 3.20e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90991706 1607 LYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 1670
Cdd:COG5010   90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 832-1048 4.36e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 4.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  832 AEAKLKKHKILLIKDESVLKNLVLQEAKKKEsvrnAEAKITKLTEQLQAAEKILSANRMFLKKLQEQIHRVQQRVTIKKA 911
Cdd:COG1196  220 EELKELEAELLLLKLRELEAELEELEAELEE----LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  912 LTLKYGEELARAKAvASKELGKRKLEQDRLGPNKMMRLDNspissprkHSAELIAMEKrRLQKLEYEYALKIQKLKEARA 991
Cdd:COG1196  296 ELARLEQDIARLEE-RRRELEERLEELEEELAELEEELEE--------LEEELEELEE-ELEEAEEELEEAEAELAEAEE 365

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 90991706  992 LKAKEQQNLVPVVEEepefsvpqpsLHDLTQDKLTLDTEENDVDDEVLSGASRERRR 1048
Cdd:COG1196  366 ALLEAEAELAEAEEE----------LEELAEELLEALRAAAELAAQLEELEEAEEAL 412
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1350-1435 5.46e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 5.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG5010   74 LALLEQALQLDPNNPELYYNLALLYSRSGD------KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                 ....*.
gi 90991706 1430 AVEYAP 1435
Cdd:COG5010  148 ALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1614-1700 6.54e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 6.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1614 LHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRvWLTAFENNPQNAEIFYHLCKFFILQDGGDKLL 1693
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                 ....*..
gi 90991706 1694 PVLRQFV 1700
Cdd:COG3063   80 AYLERAL 86
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1608-1670 1.27e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.27e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90991706 1608 YTNMIALHQLLERYEEAVELcTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 1670
Cdd:COG3063   29 LNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 736-1034 1.60e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 46.43  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    736 GLESMIKEARRTAEQaSKPKVPPKSEKENDPLRTPEALPEEKKMeyrLLKEEIANREKQRLIKSDqLKTSSSSPANSDVE 815
Cdd:pfam07888   77 ELESRVAELKEELRQ-SREKHEELEEKYKELSASSEELSEEKDA---LLAQRAAHEARIRELEED-IKTLTQRVLERETE 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    816 MDGIG-RIAMVTKQVADAEAKLKKHKILLIKDESVLKNLV--LQEAKKKESVRNAEA-----KITKLTEQLQAAEKILSA 887
Cdd:pfam07888  152 LERMKeRAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSkeFQELRNSLAQRDTQVlqlqdTITTLTQKLTTAHRKEAE 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    888 NRMFLKKL---QEQIHRVQQRVTIkkaltlkYGEELAraKAVASKELGKRKLEQDRLGPNKM----------MRLDNSPI 954
Cdd:pfam07888  232 NEALLEELrslQERLNASERKVEG-------LGEELS--SMAAQRDRTQAELHQARLQAAQLtlqladaslaLREGRARW 302

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    955 SSPRKHSAELIAMEKRRLQKLEYEYALKIQKLKEARALKAK--------EQQNLVPVVEEEPEFSVPQPSLHDLTQDKLT 1026
Cdd:pfam07888  303 AQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKlevelgreKDCNRVQLSESRRELQELKASLRVAQKEKEQ 382


                   ....*...
gi 90991706   1027 LDTEENDV 1034
Cdd:pfam07888  383 LQAEKQEL 390
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1364-1513 2.13e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1364 VQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWTF 1443
Cdd:COG4783    4 AEALYALAQALLLAGD------YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1444 LhLESTFEEKDYvcERMVEFLMGAAKREISDILSFQLLEALLFRvqlhifTGRCQSALAVLQNALKLAND 1513
Cdd:COG4783   78 L-GLALLKAGDY--DEALALLEKALKLDPEHPEAYLRLARAYRA------LGRPDEAIAALEKALELDPD 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1350-1436 2.26e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNvLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 1429
Cdd:COG3063   12 EEYYEKALELDPDNADALNNLGLLLLEQGR------YDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 ....*..
gi 90991706 1430 AVEYAPD 1436
Cdd:COG3063   85 ALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1567-1674 3.36e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 3.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1567 QAAQDVKTNPD-----LLLAV-------FEDAVKACTDETLTSGERIEVclplYTNMIALHQLLERYEEAVELCTSLLES 1634
Cdd:COG4235    5 RLRQALAANPNdaegwLLLGRaylrlgrYDEALAAYEKALRLDPDNADA----LLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 90991706 1635 CPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAE 1674
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1620-1670 3.89e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 3.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 90991706 1620 RYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 1670
Cdd:cd24142   15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1360-1519 4.67e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 4.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1360 NPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYqs 1439
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGR------YEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706 1440 FWTFLHLESTFEE-KDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAE 1518
Cdd:COG0457   76 AEALNNLGLALQAlGRY--EEALEDYDKALELDPDDA------EALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147


                 .
gi 90991706 1519 Y 1519
Cdd:COG0457  148 Y 148
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1353-1681 4.82e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 4.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1353 LEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVE 1432
Cdd:TIGR02917  556 LEKAAELNPQEIEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1433 YAPD-----------YQSF------WTFLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLE------ALLFRV- 1488
Cdd:TIGR02917  630 LQPDsalalllladaYAVMknyakaITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQkqhpkaALGFELe 709

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1489 -QLHIFTGRCQSALAVLQNALKLANDAIVAEYL-----------KTDDRCLAWLAyihliefnslpsklyDPSNANPSRI 1556
Cdd:TIGR02917  710 gDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasgntaEAVKTLEAWLK---------------THPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   1557 VNTEPFVMPWQAAQDVKtnpdlllaVFEDAVKACTDetltsgerievclplytNMIALHQL----LERYE-EAVELCTSL 1631
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIK--------HYQTVVKKAPD-----------------NAVVLNNLawlyLELKDpRALEYAERA 829

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 90991706   1632 LESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCK 1681
Cdd:TIGR02917  830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
PTZ00121 PTZ00121
MAEBL; Provisional
 743-1007 7.15e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.75  E-value: 7.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   743 EARRTAEQASKPKVPPKSEKENdplRTPEALPEEKKMEYRLLKEEIANRekqrliKSDQLKTSSSSPANSDVEMDGIGRI 822
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEA---AADEAEAAEEKAEAAEKKKEEAKK------KADAAKKKAEEKKKADEAKKKAEED 1403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   823 AMVTKQVADAEAKLKKHKILLIKDESVLKnlvLQEAKKK-ESVRNAEAKITKLTEQLQAAEKILSANRMflKKLQEQIHR 901
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKK---ADEAKKKaEEAKKADEAKKKAEEAKKAEEAKKKAEEA--KKADEAKKK 1478

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   902 VQQRvtiKKALTLKYGEELARAKA--VASKELGKRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIAMEKRRLQKL---- 975
Cdd:PTZ00121 1479 AEEA---KKADEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELkkae 1555

                         250       260       270
                  ....*....|....*....|....*....|..
gi 90991706   976 EYEYALKIQKLKEARalKAKEQQNLVPVVEEE 1007
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAK--KAEEDKNMALRKAEE 1585
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 819-1081 1.05e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.19  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    819 IGRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILS---------ANR 889
Cdd:TIGR00618  299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSireiscqqhTLT 378

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    890 MFLKKLQEQIHRVQQRVTIKKALTLKYGEELARAKAVASKElgkRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIA--- 966
Cdd:TIGR00618  379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF---RDLQGQLAHAKKQQELQQRYAELCAAAITCTAQcek 455

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    967 MEKRRLQKLEYEYALKIQKLK----------------EARALKAKEQQNLVPVVEEEPE--------FSVPQPSLHDLTQ 1022
Cdd:TIGR00618  456 LEKIHLQESAQSLKEREQQLQtkeqihlqetrkkavvLARLLELQEEPCPLCGSCIHPNparqdidnPGPLTRRMQRGEQ 535

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90991706   1023 DKLTLDTEENDVDDEVLSgaSRERRRSF---LESNSFTKPNLKHTDTPNKECINKLSKSTVE 1081
Cdd:TIGR00618  536 TYAQLETSEEDVYHQLTS--ERKQRASLkeqMQEIQQSFSILTQCDNRSKEDIPNLQNITVR 595
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 742-1069 1.06e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 44.19  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    742 KEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKMEYRLLKEEIA------NREKQRLIKSDQLKTSSSSPANSDVE 815
Cdd:pfam02463  242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKllakeeEELKSELLKLERRKVDDEEKLKESEK 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    816 MDG--IGRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSANRMF-- 891
Cdd:pfam02463  322 EKKkaEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELks 401

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    892 --LKKLQEQIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNKMMRLDNSPISSPRKHSAELIAMEK 969
Cdd:pfam02463  402 eeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    970 RRLQKLEyeyALKIQKLKEARalkAKEQQNLVPVVEEEPEFSVPQPSLHDLTQDKLTlDTEENDVDDEVLSGASRERRRS 1049
Cdd:pfam02463  482 LQEQLEL---LLSRQKLEERS---QKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVS 554

                          330       340
                   ....*....|....*....|
gi 90991706   1050 FLESNSFTKPNLKHTDTPNK 1069
Cdd:pfam02463  555 ATADEVEERQKLVRALTELP 574
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 776-998 1.57e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.77  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  776 EKKMEYRLLKEEIANREKQRLIKSDQLKTSSSSPANSDVEmdgigrIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVL 855
Cdd:COG1196  210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELE------ELEAELEELEAELAELEAELEELRLELEELELEL 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706  856 QEAKKKEsvRNAEAKITKLTEQLQAAEKILSANRMFLKKLQEQIHRVQQRVtikkaltLKYGEELARAKAVASKELGKRK 935
Cdd:COG1196  284 EEAQAEE--YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-------EELEEELEELEEELEEAEEELE 354

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90991706  936 LEQDRLgpnkmmrldnspisspRKHSAELIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQ 998
Cdd:COG1196  355 EAEAEL----------------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1614-1679 2.50e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 2.50e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90991706 1614 LHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 1679
Cdd:COG4235   26 AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
PRK12704 PRK12704
phosphodiesterase; Provisional
 738-925 3.10e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   738 ESMIKEARRTAEQASKpkvppksekendplrtpEALPEEKKmEYRLLKEEIANREKQRLIKSDQLKtsssspansdvemd 817
Cdd:PRK12704   41 KRILEEAKKEAEAIKK-----------------EALLEAKE-EIHKLRNEFEKELRERRNELQKLE-------------- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706   818 gigriamvtKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKL-TEQLQAAEKI--LS---ANRMF 891
Cdd:PRK12704   89 ---------KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELiEEQLQELERIsgLTaeeAKEIL 159

                         170       180       190
                  ....*....|....*....|....*....|....
gi 90991706   892 LKKLQEQIhRVQQRVTIKKAltlkygEELARAKA 925
Cdd:PRK12704  160 LEKVEEEA-RHEAAVLIKEI------EEEAKEEA 186
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1607-1672 4.80e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 4.80e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90991706 1607 LYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQN 1672
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
1607-1660 6.40e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 6.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90991706   1607 LYTNMIALHQLLERYEEAVELCTSLLESC--------PTNCQLLETLAALYLKTDRYDKARR 1660
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALE 66
TPR_19 pfam14559
Tetratricopeptide repeat;
1619-1675 7.30e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 7.30e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 90991706   1619 ERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEI 1675
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 834-992 7.41e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 41.49  E-value: 7.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    834 AKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTE-QLQAAEKILSANRMFLKKLQEQIHRVQQRVT----- 907
Cdd:TIGR00618  559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEkLSEAEDMLACEQHALLRKLQPEQDLQDVRLHlqqcs 638

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    908 --IKKALTLKYGEELA------RAKAVASKELGKRKLEQDRLGPNKM--------------------MRLDNSPISSPRK 959
Cdd:TIGR00618  639 qeLALKLTALHALQLTltqervREHALSIRVLPKELLASRQLALQKMqsekeqltywkemlaqcqtlLRELETHIEEYDR 718

                          170       180       190
                   ....*....|....*....|....*....|...
gi 90991706    960 HSAELIAMEKRRLQKLEYEYALKIQKLKEARAL 992
Cdd:TIGR00618  719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQ 751
TPR_19 pfam14559
Tetratricopeptide repeat;
1350-1407 7.75e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 7.75e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 90991706   1350 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIW 1407
Cdd:pfam14559    8 LELLEQALAEDPDNAEARLGLAEALLALGR------LDEAEALLAALPAADPDDPRYA 59
TPR_14 pfam13428
Tetratricopeptide repeat;
1364-1413 8.48e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 35.86  E-value: 8.48e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 90991706   1364 VQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRL 1413
Cdd:pfam13428    1 PEALLALARALLALGD------PDEALALLERALALDPDDPEAWLALAQL 44
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 775-1027 9.78e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 9.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    775 EEKKMEYRLLKEEIANREKQRLIKSDQLKTSSSSPANSDVEMDGIGRiamvTKQVADAEAKLKKHKILLIKDEsvLKNLV 854
Cdd:TIGR02168  284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES----KLDELAEELAELEEKLEELKEE--LESLE 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    855 LQEAKKKESVRNAEAKITKLTEQLQAAekilsANRMFLKKLQEQIHRVQQRVtikkaltlkYGEELARAKAVASKELGKR 934
Cdd:TIGR02168  358 AELEELEAELEELESRLEELEEQLETL-----RSKVAQLELQIASLNNEIER---------LEARLERLEDRRERLQQEI 423

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90991706    935 KLEQDRLGPNKMMRLdnspissprkhsAELIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNLVPVVEEEPEFSVPQ 1014
Cdd:TIGR02168  424 EELLKKLEEAELKEL------------QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491

                          250
                   ....*....|...
gi 90991706   1015 PSLHDLTQDKLTL 1027
Cdd:TIGR02168  492 DSLERLQENLEGF 504
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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