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Conserved domains on  [gi|112983818|ref|NP_001037758|]
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nucleosome assembly protein 1-like 5 [Rattus norvegicus]

Protein Classification

NAP domain-containing protein( domain architecture ID 1637)

NAP domain-containing protein similar to Homo sapiens protein testis-specific Y-encoded protein and nucleosome assembly protein 1-like

CATH:  3.30.1120.90
Gene Ontology:  GO:0042393|GO:0003682|GO:0006334
PubMed:  16936827
SCOP:  4003454

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NAP super family cl47614
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
 67-114 6.85e-12

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


The actual alignment was detected with superfamily member pfam00956:

Pssm-ID: 460010  Cd Length: 203  Bit Score: 60.26  E-value: 6.85e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 112983818   67 RVLALKKLQKRCDKIEAKFDKEFQALEKKYNDIYKPLLaKIQELTGEM 114
Cdd:pfam00956   2 RVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY-KNLPLLSEM 48
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
 67-114 6.85e-12

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 60.26  E-value: 6.85e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 112983818   67 RVLALKKLQKRCDKIEAKFDKEFQALEKKYNDIYKPLLaKIQELTGEM 114
Cdd:pfam00956   2 RVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY-KNLPLLSEM 48
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
 71-109 1.08e-04

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 40.93  E-value: 1.08e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 112983818  71 LKKLQKRCDKIEAKFDKEFQALEKKYNDIYKPLLAKIQE 109
Cdd:PTZ00007  46 LQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKE 84
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
 67-114 6.85e-12

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 60.26  E-value: 6.85e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 112983818   67 RVLALKKLQKRCDKIEAKFDKEFQALEKKYNDIYKPLLaKIQELTGEM 114
Cdd:pfam00956   2 RVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY-KNLPLLSEM 48
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
 71-109 1.08e-04

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 40.93  E-value: 1.08e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 112983818  71 LKKLQKRCDKIEAKFDKEFQALEKKYNDIYKPLLAKIQE 109
Cdd:PTZ00007  46 LQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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