|
Name |
Accession |
Description |
Interval |
E-value |
| Tryp_SPc |
smart00020 |
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ... |
325-554 |
3.35e-99 |
|
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Pssm-ID: 214473 Cd Length: 229 Bit Score: 300.36 E-value: 3.35e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 325 RIVGGALASDSKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKVLEGWKVYAGTSNLHQLPEA--ASIAEII 401
Cdd:smart00020 1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 402 INSNYTDEEDDYDIALMRLSKPLTLSAHIHPACLPMHGQTFSLNETCWITGFGKTRETDDKTSPFLREVQVNLIDFKKCN 481
Cdd:smart00020 78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 482 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCeQNNRWYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWI 554
Cdd:smart00020 158 RAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
|
|
| Tryp_SPc |
cd00190 |
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ... |
326-557 |
5.54e-97 |
|
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Pssm-ID: 238113 [Multi-domain] Cd Length: 232 Bit Score: 294.57 E-value: 5.54e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 326 IVGGALASDSKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtREKVLEGWKVYAGTSNLHQLPE---AASIAEII 401
Cdd:cd00190 1 IVGGSEAKIGSFPWQVSLQYTGgRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 402 INSNYTDEEDDYDIALMRLSKPLTLSAHIHPACLPMHGQTFSLNETCWITGFGKTRETDdKTSPFLREVQVNLIDFKKCN 481
Cdd:cd00190 78 VHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGG-PLPDVLQEVNVPIVSNAECK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116256363 482 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWIYSK 557
Cdd:cd00190 157 RAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
|
|
| COG5640 |
COG5640 |
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ... |
317-558 |
2.03e-70 |
|
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444365 [Multi-domain] Cd Length: 262 Bit Score: 227.22 E-value: 2.03e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 317 CGLRAMTGRIVGGALASDSKWPWQVSLHF---GTTHICGGTLIDAQWVLTAAHCFFvtrEKVLEGWKVYAGTSNLH-QLP 392
Cdd:COG5640 22 APAADAAPAIVGGTPATVGEYPWMVALQSsngPSGQFCGGTLIAPRWVLTAAHCVD---GDGPSDLRVVIGSTDLStSGG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 393 EAASIAEIIINSNYTDEEDDYDIALMRLSKPLTLSAhihPACLPMHGQTFSLNETCWITGFGKTRETDDKTSPFLREVQV 472
Cdd:COG5640 99 TVVKVARIVVHPDYDPATPGNDIALLKLATPVPGVA---PAPLATSADAAAPGTPATVAGWGRTSEGPGSQSGTLRKADV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 473 NLIDFKKCNdylVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGTGCGQRNKPGVYTKVTEVLP 552
Cdd:COG5640 176 PVVSDATCA---AYGGFDGGTMLCAGYPEGGKDACQGDSGGPLVVKDGGGWVLVGVVSWGGGPCAAGYPGVYTRVSAYRD 252
|
....*.
gi 116256363 553 WIYSKM 558
Cdd:COG5640 253 WIKSTA 258
|
|
| Trypsin |
pfam00089 |
Trypsin; |
326-554 |
2.17e-70 |
|
Trypsin;
Pssm-ID: 459667 [Multi-domain] Cd Length: 219 Bit Score: 225.40 E-value: 2.17e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 326 IVGGALASDSKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtreKVLEGWKVYAGTSNLHQLPEA---ASIAEII 401
Cdd:pfam00089 1 IVGGDEAQPGSFPWQVSLQLSSgKHFCGGSLISENWVLTAAHCV-----SGASDVKVVLGAHNIVLREGGeqkFDVEKII 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 402 INSNYTDEEDDYDIALMRLSKPLTLSAHIHPACLPMHGQTFSLNETCWITGFGKTREtdDKTSPFLREVQVNLIDFKKCN 481
Cdd:pfam00089 76 VHPNYNPDTLDNDIALLKLESPVTLGDTVRPICLPDASSDLPVGTTCTVSGWGNTKT--LGPSDTLQEVTVPVVSRETCR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 482 DYlvYDSYLTPRMMCAGDlrGGRDSCQGDSGGPLVCEQNnrwYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWI 554
Cdd:pfam00089 154 SA--YGGTVTDTMICAGA--GGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 219
|
|
| SRCR_2 |
pfam15494 |
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ... |
231-321 |
4.96e-29 |
|
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.
Pssm-ID: 464747 Cd Length: 99 Bit Score: 110.50 E-value: 4.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 231 WDKSLLKIYSGSSHQWLPICSSNWNDSYSEKTCQQLGFESAHRTTEVAHRD----FANSFSIL---RYNSTIQESL-HRS 302
Cdd:pfam15494 1 GENFLLQVYSSARPSWLPVCSDDWNPAYGRAACQQLGYLRLTHHKSVNLTDissnSSQSFMKLnssSLNTDLYEALqPRD 80
|
90
....*....|....*....
gi 116256363 303 ECPSQRYISLQCSHCGLRA 321
Cdd:pfam15494 81 SCSSGSVVSLRCSECGLRS 99
|
|
| eMpr |
COG3591 |
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ... |
346-534 |
1.09e-13 |
|
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442810 [Multi-domain] Cd Length: 194 Bit Score: 69.71 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 346 GTTHICGGTLIDAQWVLTAAHCFF-VTREKVLEGWKVYAGTSNLHqlPEAASIAEIIINSNYTDEED-DYDIALMRLSKP 423
Cdd:COG3591 9 GGGGVCTGTLIGPNLVLTAGHCVYdGAGGGWATNIVFVPGYNGGP--YGTATATRFRVPPGWVASGDaGYDYALLRLDEP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 424 LTLSAhihpACLPMHGQTFSL-NETCWITGFGKtretDDKTSPFLRevqvnlidfkkCNDYLVYDSyltprmmcAGDLRG 502
Cdd:COG3591 87 LGDTT----GWLGLAFNDAPLaGEPVTIIGYPG----DRPKDLSLD-----------CSGRVTGVQ--------GNRLSY 139
|
170 180 190
....*....|....*....|....*....|..
gi 116256363 503 GRDSCQGDSGGPLVCEQNNRWYLAGVTSWGTG 534
Cdd:COG3591 140 DCDTTGGSSGSPVLDDSDGGGRVVGVHSAGGA 171
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
9-148 |
3.14e-13 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 72.79 E-value: 3.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPAR 88
Cdd:PHA03378 689 WAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPA 768
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 89 ASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPiRSSPARSAPATRATRE 148
Cdd:PHA03378 769 AAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP-RAAPGQQGPTKQILRQ 827
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
8-91 |
8.20e-11 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 65.09 E-value: 8.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 8 NASPARTPSAgaSPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPA 87
Cdd:PHA03378 680 GANTMLPIQW--APGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 757
|
....
gi 116256363 88 RASP 91
Cdd:PHA03378 758 AAAP 761
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
15-142 |
1.35e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 63.97 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 15 PSAGASPAQASPAGTP--PGRASPAqASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASPA 92
Cdd:PRK14951 366 PAAAAEAAAPAEKKTParPEAAAPA-AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 116256363 93 LASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPirsSPARSAPA 142
Cdd:PRK14951 445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP---AAARLTPT 491
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
7-91 |
1.37e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 64.24 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASP 86
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
|
....*
gi 116256363 87 ARASP 91
Cdd:PRK07764 472 AAPEP 476
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
9-155 |
1.51e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 64.10 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQAS---------PAGTPPGRASPGRASPAQA 79
Cdd:PRK07003 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAdrgddaadgDAPVPAKANARASADSRCD 464
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116256363 80 SPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVR-ATPVGAVPIRSSPARSA-PATRATRESPGTSLP 155
Cdd:PRK07003 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPdARAPAAASREDAPAAAApPAPEARPPTPAAAAP 542
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
3-170 |
5.67e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 62.20 E-value: 5.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPA 82
Cdd:PRK12323 420 AAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 83 QASP---ARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLPKFT- 158
Cdd:PRK12323 500 EELPpefASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDg 579
|
170
....*....|...
gi 116256363 159 -WREGQKQLPLIG 170
Cdd:PRK12323 580 dWPALAARLPVRG 592
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
4-150 |
7.75e-10 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 62.01 E-value: 7.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQ 83
Cdd:PHA03378 644 NVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGR 723
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116256363 84 ASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESP 150
Cdd:PHA03378 724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
15-155 |
1.86e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.38 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 15 PSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASPALA 94
Cdd:PRK07764 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116256363 95 SLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:PRK07764 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
15-155 |
2.00e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 60.63 E-value: 2.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 15 PSAGASPAQASPAGTPPGRASP---AQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASP 91
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAavgASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 92 alASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPirsSPARSAPATRATRESPGTSLP 155
Cdd:PRK07003 448 --PVPAKANARASADSRCDERDAQPPADSGSASAPASDAP---PDAAFEPAPRAAAPSAATPAA 506
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
9-91 |
2.06e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 60.11 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQAS----PAQASPAGTPPGRASPAQASP----AGTPPGRASPGRASPAQAS 80
Cdd:PRK14951 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPaaapAAAASAPAAPPAAAPPAPVAApaaaAPAAAPAAAPAAVALAPAP 451
|
90
....*....|.
gi 116256363 81 PAQASPARASP 91
Cdd:PRK14951 452 PAQAAPETVAI 462
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
21-151 |
2.88e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.73 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 21 PAQASPAGTPPGRASPAQasPAQASPAGTPPGRASPAQAsPAGTPPGRASPGRASPAQASPAQASPARASPALASLSRSS 100
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPAR--PEAAAPAAAPVAQAAAAPA-PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 116256363 101 SGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPA-TRATRESPG 151
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAaARLTPTEEG 494
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
5-150 |
5.52e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 59.23 E-value: 5.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 5 SHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQA 84
Cdd:PRK07764 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116256363 85 SPARASPALASLSRSSSGRSSSARSASVTTSPTRVYlvrATPVGAVPIRSSPARSAPATRATRESP 150
Cdd:PRK07764 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA---GAPAQPPPPPAPAPAAAPAAAPPPSPP 779
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-172 |
6.55e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 59.18 E-value: 6.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAgTPPGRASPAQASPAGTPPGRASPGRaSPAQASPAQASPAR 88
Cdd:PHA03247 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPA 2773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 89 ---ASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPAR-SAPATRATRESPGTSLPKFtwregQK 164
Cdd:PHA03247 2774 apaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGpLPPPTSAQPTAPPPPPGPP-----PP 2848
|
....*...
gi 116256363 165 QLPLIGCV 172
Cdd:PHA03247 2849 SLPLGGSV 2856
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1-91 |
1.71e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 57.30 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERdSHGNASPARTPSAGASP-AQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQA 79
Cdd:PRK07764 381 LER-RLGVAGGAGAPAAAAPSaAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459
|
90
....*....|..
gi 116256363 80 SPAQASPARASP 91
Cdd:PRK07764 460 AAPSAQPAPAPA 471
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
5-170 |
2.43e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.81 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 5 SHGNASPArtpsagaSPAQASPAGTPPGRASPAQASPAQASPAGTPPgrasPAQASPAGTPPGRASPGRASPAQASPAQA 84
Cdd:PRK12323 368 SGGGAGPA-------TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA----AAPAAAAAARAVAAAPARRSPAPEALAAA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 85 SPARAspalaSLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPirsSPARSAPAtRATRESPGTSLPkftWREGQK 164
Cdd:PRK12323 437 RQASA-----RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA---APARAAPA-AAPAPADDDPPP---WEELPP 504
|
....*.
gi 116256363 165 QLPLIG 170
Cdd:PRK12323 505 EFASPA 510
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
9-91 |
2.93e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 56.41 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQAS-PAGTPPGRASPGRASPAQASPAQASPA 87
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQlLAARQQLQRAQGATKAKKSEPAAASRA 449
|
....
gi 116256363 88 RASP 91
Cdd:PRK07994 450 RPVN 453
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
31-163 |
3.32e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 56.26 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 31 PGRASPAQASPAQASPAgtPPGRASPAQASPAGTPPGRAsPGRASPAQASPAQASPARASPALASLSRSSSGRSSSARSA 110
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPA--RPEAAAPAAAPVAQAAAAPA-PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 116256363 111 SVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLPKFTWREGQ 163
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
4-91 |
3.65e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 56.26 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGASPAQASPAGTPPGRASP----AQASPAQASPAGTPPGRASPAQASPAG-TPPGRASPGRASPAQ 78
Cdd:PRK14951 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAApaaaAPAAAPAAAPAAVALAPAPPAQAAPETvAIPVRVAPEPAVASA 475
|
90
....*....|...
gi 116256363 79 ASPAQASPARASP 91
Cdd:PRK14951 476 APAPAAAPAAARL 488
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
5-150 |
5.09e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 5.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 5 SHGNASPArTPSAGASPAQASPAGTPPGRASPAQ----ASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQAS 80
Cdd:PHA03247 2727 AARQASPA-LPAAPAPPAVPAGPATPGGPARPARppttAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116256363 81 PAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGA--VP----IRSSPARSAPATRATRESP 150
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvAPggdvRRRPPSRSPAAKPAAPARP 2881
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
3-87 |
8.61e-08 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 55.46 E-value: 8.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSagASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASP---AGTPPGRASPG-----RA 74
Cdd:PHA03378 715 QRPAAATGRARPPA--AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgapTPQPPPQAPPApqqrpRG 792
|
90
....*....|...
gi 116256363 75 SPAQASPAQASPA 87
Cdd:PHA03378 793 APTPQPPPQAGPT 805
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
4-152 |
1.58e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPartPSAGASPAQASPAGTPPGRASPAQASPAQASPA---GTPPGRASP-AQASPAGTPPGRASPGRASPAQA 79
Cdd:PHA03247 2546 DDAGDPPP---PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRArrpDAPPQSARPrAPVDDRGDPRGPAPPSPLPPDTH 2622
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 80 SPAQASPARaSPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGT 152
Cdd:PHA03247 2623 APDPPPPSP-SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGS 2694
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
5-152 |
2.66e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 53.64 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 5 SHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQA 84
Cdd:PHA03307 101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116256363 85 SPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAvPIRSSPARSAPATRATRESPGT 152
Cdd:PHA03307 181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG-RSAADDAGASSSDSSSSESSGC 247
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
3-156 |
2.78e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 53.64 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPAQ-ASPAGTPPGRASPAQASPAQA----SPAGTPPGRASPAQASPAGTPPGRASPGRASPA 77
Cdd:PHA03307 141 VGSPGPPPAASPPAAGASPAAvASDAASSRQAALPLSSPEETArapsSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 78 QASPA--QASPARASPALASLSRSSSGRSSSARSASVtTSPTRVYLVRATPVGAVPI----RSSPARSAPATRATRESPG 151
Cdd:PHA03307 221 APAPGrsAADDAGASSSDSSSSESSGCGWGPENECPL-PRPAPITLPTRIWEASGWNgpssRPGPASSSSSPRERSPSPS 299
|
....*
gi 116256363 152 TSLPK 156
Cdd:PHA03307 300 PSSPG 304
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
7-91 |
4.35e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 52.86 E-value: 4.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GNASPARTPSAGASPAQASPA-GTPPGRASPAQASPAQASPAGTPPgrASPAQASPAGTPPGRASPgRASPAQASPAQAS 85
Cdd:PRK14971 367 DDASGGRGPKQHIKPVFTQPAaAPQPSAAAAASPSPSQSSAAAQPS--APQSATQPAGTPPTVSVD-PPAAVPVNPPSTA 443
|
....*.
gi 116256363 86 PARASP 91
Cdd:PRK14971 444 PQAVRP 449
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
14-87 |
4.92e-07 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.97 E-value: 4.92e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 14 TPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPA 87
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-91 |
6.78e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.30 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASP-------------AQASPAGTPPGRASPGRAS 75
Cdd:PRK07764 613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPdasdggdgwpakaGGAAPAAPPPAPAPAAPAA 692
|
90
....*....|....*.
gi 116256363 76 PAQASPAQASPARASP 91
Cdd:PRK07764 693 PAGAAPAQPAPAPAAT 708
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
3-82 |
7.52e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.30 E-value: 7.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPA 82
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
14-153 |
9.99e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.91 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 14 TPSAGASPAQASPAGTPPGRASPAQASPAQASPAGtPPGRASPAQASPAGTPPGrasPGRASPAQASPAQASPARASPAL 93
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAA-PAAPAAPAAPAPAGAAAA---PAEASAAPAPGVAAPEHHPKHVA 658
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 94 ASLSRSSSGRSSSARSASVTTSPTrvylVRATPVGAVPIRSSPARSAPATRATRESPGTS 153
Cdd:PRK07764 659 VPDASDGGDGWPAKAGGAAPAAPP----PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
7-155 |
1.96e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.09 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GNASPARTPSAGASPAQASpagTPPGRASPAQASPAQAS---PAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPaq 83
Cdd:PHA03247 2659 GRVSRPRRARRLGRAAQAS---SPPQRPRRRAARPTVGSltsLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP-- 2733
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116256363 84 ASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRAtPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:PHA03247 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
11-168 |
2.29e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.09 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 11 PARTPSAGASPAQASPAGTPPGRASP-AQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARA 89
Cdd:PHA03247 2573 PAPRPSEPAVTSRARRPDAPPQSARPrAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 90 SPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSS----PARSAPATRATRESPGTSLPKFTWREGQKQ 165
Cdd:PHA03247 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLadppPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
|
...
gi 116256363 166 LPL 168
Cdd:PHA03247 2733 PAL 2735
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
2-155 |
3.40e-06 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 49.96 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASP 81
Cdd:pfam17823 89 EHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAP 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 82 AQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSA--------PATRATRESPGTS 153
Cdd:pfam17823 169 HAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTAlaavgnssPAAGTVTAAVGTV 248
|
..
gi 116256363 154 LP 155
Cdd:pfam17823 249 TP 250
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
9-88 |
4.70e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.46 E-value: 4.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAqasPAQASPAR 88
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT---PAAAAPAA 544
|
|
| SR |
smart00202 |
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ... |
245-316 |
7.79e-06 |
|
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.
Pssm-ID: 214555 [Multi-domain] Cd Length: 101 Bit Score: 44.64 E-value: 7.79e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 245 QWLPICSSNWNDSYSEKTCQQLGFESAHRTTEVAHrDFANSFSILRYNSTI--QESlHRSECPSQRYISLQCSH 316
Cdd:smart00202 21 QWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAY-FGPGSGPIWLDNVRCsgTEA-SLSDCPHSGWGSHNCSH 92
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
1-90 |
1.26e-05 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 48.14 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAG-TPPGRASPAQASPAQASPAGTPPGRASPA-----QASPA-GTPPGRASPGR 73
Cdd:pfam03546 382 AQEDSESSEEESDSEEAAATPAQVKASGkTPQAKANPAPTKASSAKGAASAPGKVVAAaaqakQGSPAkVKPPARTPQNS 461
|
90 100 110
....*....|....*....|....*....|.
gi 116256363 74 ASPAQ--------------ASPAQASPARAS 90
Cdd:pfam03546 462 AISVRgqasvpavgkavatAAQAQKGPVGGP 492
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-91 |
1.63e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 47.75 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQAS 80
Cdd:PRK14959 386 AEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGA 465
|
90
....*....|.
gi 116256363 81 PAQASPARASP 91
Cdd:PRK14959 466 PDSVASASDAP 476
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
10-167 |
1.74e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.01 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 10 SPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRA-SPGRASPAQASPAQASPAR 88
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRArRLGRAAQASSPPQRPRRRA 2687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 89 ASPALASLSRSSSGRSSSArsasvTTSPTRVYLVRATPVGAVPIRSSPARSA-PATRATRESP-GTSLPKFTWREGQKQL 166
Cdd:PHA03247 2688 ARPTVGSLTSLADPPPPPP-----TPEPAPHALVSATPLPPGPAAARQASPAlPAAPAPPAVPaGPATPGGPARPARPPT 2762
|
.
gi 116256363 167 P 167
Cdd:PHA03247 2763 T 2763
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
3-91 |
1.81e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.86 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSaGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPA 82
Cdd:PHA03307 339 AAVSPGPSPSRSPS-PSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPL 417
|
....*....
gi 116256363 83 QASPARASP 91
Cdd:PHA03307 418 DAGAASGAF 426
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
8-91 |
2.09e-05 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 46.39 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 8 NASPARTPSaGASPAQASPAGTPPGRASPAQASPAQAsPAGTPPgraSPAQASPAGT----PPGRASPGRASPAQASPAQ 83
Cdd:PHA02682 69 NSACMQRPS-GQSPLAPSPACAAPAPACPACAPAAPA-PAVTCP---APAPACPPATaptcPPPAVCPAPARPAPACPPS 143
|
....*...
gi 116256363 84 ASPARASP 91
Cdd:PHA02682 144 TRQCPPAP 151
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
6-147 |
2.09e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.67 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 6 HGNASPARTPSAGASPAQASPAGTPPgrASPAQASPAQASPAGTPPGRASPAQAS-PAGTPPGRASPGRASPAQASPAQA 84
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPA--APAAPAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDGGDG 668
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 85 SPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATR 147
Cdd:PRK07764 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-91 |
2.38e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.29 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGT------PPGRASPaQASPAGTPPGRAspgrASPAQASPA 82
Cdd:PRK07764 429 PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPApaaapePTAAPAP-APPAAPAPAAAP----AAPAAPAAP 503
|
....*....
gi 116256363 83 QASPARASP 91
Cdd:PRK07764 504 AGADDAATL 512
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
2-90 |
2.47e-05 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 46.99 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASPArtpsagASPAQASPA-GTPPGRASPAQASPAQASPAGTPPGRA---SPAQASPAGTPPGRASPGRASPA 77
Cdd:pfam03546 238 SSDSEEEAPAA------ATPAQAKPAlKTPQTKASPRKGTPITPTSAKVPPVRVgtpAPWKAGTVTSPACASSPAVARGA 311
|
90
....*....|...
gi 116256363 78 QASPAQASPARAS 90
Cdd:pfam03546 312 QRPEEDSSSSEES 324
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-91 |
2.82e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQAS---------PAGTPPGRASPAQASPAGTPPGRASPGRASPAQ- 78
Cdd:PHA03247 378 ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASvptpaptpvPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAp 457
|
90
....*....|....
gi 116256363 79 -ASPAQASPARASP 91
Cdd:PHA03247 458 aTEPAPDDPDDATR 471
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
9-146 |
4.45e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGT----PPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGrASPAQASPAQA 84
Cdd:PRK07003 420 ATRAEAPPAAPAPPATADRGDdaadGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPD-AAFEPAPRAAA 498
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116256363 85 SPARASPALASLSRSSSGRSSSARSASVTTSPtrvylvRATPvgavpirSSPARSAPATRAT 146
Cdd:PRK07003 499 PSAATPAAVPDARAPAAASREDAPAAAAPPAP------EARP-------PTPAAAAPAARAG 547
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-91 |
6.49e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.75 E-value: 6.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPAR 88
Cdd:PRK07764 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
|
...
gi 116256363 89 ASP 91
Cdd:PRK07764 799 RDA 801
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
14-155 |
6.97e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.93 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 14 TPSAGA---SPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARAS 90
Cdd:PHA03307 72 PPGPGTeapANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116256363 91 PALASLSRSSSGRSSSARSASVTTSPTRVYLVRA--TPVGAVPIRSSPARSAPATRATRE--SPGTSLP 155
Cdd:PHA03307 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARApsSPPAEPPPSTPPAAASPRPPRRSSpiSASASSP 220
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-155 |
7.09e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASP---AGTPPGRASPAQASPAGTPPGRASPGRASPAQASP---- 81
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADppaAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGpppp 2848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 82 --------------AQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVylvraTPVGAVPIRSSPARSAPATRATR 147
Cdd:PHA03247 2849 slplggsvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-----PPDQPERPPQPQAPPPPQPQPQP 2923
|
....*...
gi 116256363 148 ESPGTSLP 155
Cdd:PHA03247 2924 PPPPQPQP 2931
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
12-91 |
7.72e-05 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 45.45 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 12 ARTPSAGASPAQASPAgtPPGRASPAQA------------------------SPAQASPAG-TPPGRASPAQASPAGTPP 66
Cdd:pfam03546 351 ASAPTKGPSGQGTAPV--PPGKTGPAVAqvkaeaqedsesseeesdseeaaaTPAQVKASGkTPQAKANPAPTKASSAKG 428
|
90 100
....*....|....*....|....*
gi 116256363 67 GRASPGRASPAQASPAQASPARASP 91
Cdd:pfam03546 429 AASAPGKVVAAAAQAKQGSPAKVKP 453
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
3-86 |
8.69e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 8.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPaqasPAGTPPGRASPAQASPAQASPAGTPPGRASPAqASPAGTPPGRASPgrasPAQASPA 82
Cdd:PHA03247 397 RGPGGDDQTRPAAPVPASV----PTPAPTPVPASAPPPPATPLPSAEPGSDDGPA-PPPERQPPAPATE----PAPDDPD 467
|
....
gi 116256363 83 QASP 86
Cdd:PHA03247 468 DATR 471
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
12-153 |
9.31e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 12 ARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPaQASPAGTPPGRASPGRASPAQASPAQASPARASP 91
Cdd:PHA03247 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER-PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116256363 92 ALASLSRSSSGRSSSARSASV---TTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTS 153
Cdd:PHA03247 2942 PLAPTTDPAGAGEPSGAVPQPwlgALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
3-144 |
9.31e-05 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 44.94 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPAQA-SPAGTPPGRASPAQASPAQA-SPAGTPPGRASPAQASpAGTPPGRASPGRASpAQAS 80
Cdd:PTZ00436 214 KKSAKAAAPAKAAAAPAKAAAPpAKAAAAPAKAAAAPAKAAAPpAKAAAPPAKAAAPPAK-AAAPPAKAAAPPAK-AAAP 291
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 81 PAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVylvrATPVGAVPIRSSPARSAPATR 144
Cdd:PTZ00436 292 PAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA----ATPPAKAAAPPAKAAAAPVGK 351
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
9-87 |
9.74e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.19 E-value: 9.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGaSPAQASPAGTPPGRASPAQasPAQASPAGTPPGRASPAQASPAGTPP-GRASPGRASPAQASPAQASPA 87
Cdd:PRK14950 372 TAAAPSPVRP-TPAPSTRPKAAAAANIPPK--EPVRETATPPPVPPRPVAPPVPHTPEsAPKLTRAAIPVDEKPKYTPPA 448
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
9-155 |
9.99e-05 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 44.94 E-value: 9.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASpAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASpAGTPPGRASpgrASPAQAS--PAQASP 86
Cdd:PTZ00436 209 AAPSGKKSAKAA-APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAK-AAAPPAKAA---APPAKAAapPAKAAA 283
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116256363 87 ARASPALASLSRSSSGRSSSARSASVTTSPTRVylvrATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:PTZ00436 284 PPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKA----AAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
9-70 |
1.00e-04 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 44.89 E-value: 1.00e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGraspAQASPAQASPAGTPPGRA--SPAQASPAGTPPGRAS 70
Cdd:TIGR00601 85 APPAATPTSAPTPTPSPPASPASG----MSAAPASAVEEKSPSEESatATAPESPSTSVPSSGS 144
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
3-83 |
1.12e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAG---ASPAQASPAGTPPGRASPAQASPAQaSPAGTPPGRASPaQASPAGTPPGRASPG------R 73
Cdd:PHA03378 735 RPPAAAPGRARPPAAApgrARPPAAAPGRARPPAAAPGAPTPQP-PPQAPPAPQQRP-RGAPTPQPPPQAGPTsmqlmpR 812
|
90
....*....|
gi 116256363 74 ASPAQASPAQ 83
Cdd:PHA03378 813 AAPGQQGPTK 822
|
|
| motB |
PRK05996 |
MotB family protein; |
1-90 |
1.24e-04 |
|
MotB family protein;
Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 44.69 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASP---ARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPA 77
Cdd:PRK05996 190 VEVTTAGDLLPpgqAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDD 269
|
90
....*....|...
gi 116256363 78 QASPAQASPARAS 90
Cdd:PRK05996 270 QQKEAEQLQAAIA 282
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
12-155 |
1.41e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 44.17 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 12 ARTPSAGASPAQASPAGTPPGRASPAQASPAQASPA----GTPPGRASPAQASpAGTPPGRASpgrASPAQAS--PAQAS 85
Cdd:PTZ00436 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAApakaAAPPAKAAAAPAK-AAAAPAKAA---APPAKAAapPAKAA 268
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 86 PARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSP---ARSAPATRATRESPGTSLP 155
Cdd:PTZ00436 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPpakAAAPPAKAATPPAKAAAPP 341
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
14-86 |
1.58e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 44.42 E-value: 1.58e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 14 TPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGraSPAQASPAgTPPGRASPGRASPAQASPAQASP 86
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPP--KEPVRETA-TPPPVPPRPVAPPVPHTPESAPK 430
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
4-156 |
1.73e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGAS-PAQASPAGTPPGRASPAQASPAQASPA--GTPPGRASPAQASPAGTPPGRASPGRAS----- 75
Cdd:PHA03247 2620 DTHAPDPPPPSPSPAANePDPHPPPTVPPPERPRDDPAPGRVSRPrrARRLGRAAQASSPPQRPRRRAARPTVGSltsla 2699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 76 -PAQASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSL 154
Cdd:PHA03247 2700 dPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
|
..
gi 116256363 155 PK 156
Cdd:PHA03247 2780 PR 2781
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
19-155 |
1.92e-04 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 44.66 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 19 ASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASPALASLSR 98
Cdd:PHA03377 550 ATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSV 629
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 116256363 99 SSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPgTSLP 155
Cdd:PHA03377 630 VRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRP-SWLP 685
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
10-91 |
1.95e-04 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 43.46 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 10 SPARTPSAGASPAQASPAG---------TPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASP-AQA 79
Cdd:PHA03381 39 EPADRARRGAGQARGRSQAerrfhhydeARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGSrGRG 118
|
90
....*....|..
gi 116256363 80 SPAQASPARASP 91
Cdd:PHA03381 119 RRAESPSPRDPP 130
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
3-86 |
2.04e-04 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 44.27 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGrASPAQASPAGTPPGRASPGRASPAQASPA 82
Cdd:PHA03377 545 RRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPS-TGPRQQAKCKDGPPASGPHEKQPPSSAPR 623
|
....
gi 116256363 83 QASP 86
Cdd:PHA03377 624 DMAP 627
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
4-155 |
2.18e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQAspAGTPPGRAS------------- 70
Cdd:PRK07003 483 DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPA--AAAPAARAGgaaaaldvlrnag 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 71 ------PGRASPAQASPAQASPARASPalaslsrsssgrsssarsasvttSPTRVYLVRATPVGavPIRSSPARSAPATR 144
Cdd:PRK07003 561 mrvssdRGARAAAAAKPAAAPAAAPKP-----------------------AAPRVAVQVPTPRA--RAATGDAPPNGAAR 615
|
170
....*....|...
gi 116256363 145 ATR--ESPGTSLP 155
Cdd:PRK07003 616 AEQaaESRGAPPP 628
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
8-91 |
2.27e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.39 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 8 NASPARTPSAGASP-AQASPAGTPPGRASPAQASPAQASPAGTPPGRASP-AQASPAGTPPGRA-SPGRASPAQASPAQA 84
Cdd:PHA03307 287 SSSSPRERSPSPSPsSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSrGAAVSPGPSPSRSpSPSRPPPPADPSSPR 366
|
....*..
gi 116256363 85 SPARASP 91
Cdd:PHA03307 367 KRPRPSR 373
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
8-77 |
2.29e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.11 E-value: 2.29e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 8 NASPARTPSAGASPAQASPAGTPPgRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPA 77
Cdd:PRK12270 57 APAAAPAAKAPAAPAPAPPAAAAP-AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
3-90 |
2.43e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 43.90 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPartPSAGASPAQASP-AGT--PPGRASPAQASPAQA-SPAGTPPGRASPAQA-SPA-------GTPPGRAS 70
Cdd:PRK14959 372 RPSGGGASA---PSGSAAEGPASGgAATipTPGTQGPQGTAPAAGmTPSSAAPATPAPSAApSPRvpwddapPAPPRSGI 448
|
90 100
....*....|....*....|..
gi 116256363 71 PGRASPA--QASPAQASPARAS 90
Cdd:PRK14959 449 PPRPAPRmpEASPVPGAPDSVA 470
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
10-91 |
2.51e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 43.96 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 10 SPARTPSAGASPAQASPAGTPPGRASPAQAspaqasPAGTPPGRASPAQASPAGTPPGraspgrasPAQASPAQASPARA 89
Cdd:PRK14965 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPP------AAPARPAAARPAPAPAPPAAAA--------PPARSADPAAAASA 446
|
..
gi 116256363 90 SP 91
Cdd:PRK14965 447 GD 448
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
4-91 |
2.98e-04 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 43.09 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPpgraSPAQASPAGT--PPGRASPGRASPAQASP 81
Cdd:PRK10856 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP----SQANVDTAATpaPAAPATPDGAAPLPTDQ 241
|
90
....*....|
gi 116256363 82 AQASPARASP 91
Cdd:PRK10856 242 AGVSTPAADP 251
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
2-91 |
2.99e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.99 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASPARTPSAGASPAQASPAGTPPgRASPAQASPAQASPAGTPPGRAS-PAQASPAGTPPGRASPGRASP---A 77
Cdd:pfam03154 153 DNESDSDSSAQQQILQTQPPVLQAQSGAAS-PPSPPPPGTTQAATAGPTPSAPSvPPQGSPATSQPPNQTQSTAAPhtlI 231
|
90
....*....|....
gi 116256363 78 QASPAQASPARASP 91
Cdd:pfam03154 232 QQTPTLHPQRLPSP 245
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-91 |
3.11e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 43.58 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAGTPP----GRASPAQASPAQASPAGTPPGrasPAQASPAGTPPGRASPG---- 72
Cdd:PRK14965 377 LERGAPAPPSAAWGAPTPAAPAAPPPAAAPPvppaAPARPAAARPAPAPAPPAAAA---PPARSADPAAAASAGDRwraf 453
|
90 100
....*....|....*....|....*
gi 116256363 73 -----RASPAQASP-AQASPARASP 91
Cdd:PRK14965 454 vafvkGKKPALGASlEQGSPLGVSA 478
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2-91 |
3.50e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASPARtPSAGASPAQASPAG-----TPPGRASPAQASPA---QASPAGTPPGRA-SPAQASPAGTPPGRASPG 72
Cdd:PHA03307 291 PRERSPSPSPSS-PGSGPAPSSPRASSsssssRESSSSSTSSSSESsrgAAVSPGPSPSRSpSPSRPPPPADPSSPRKRP 369
|
90
....*....|....*....
gi 116256363 73 RASPAQASPAQASPARASP 91
Cdd:PHA03307 370 RPSRAPSSPAASAGRPTRR 388
|
|
| Metaviral_G |
pfam09595 |
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ... |
2-155 |
3.72e-04 |
|
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.
Pssm-ID: 462833 [Multi-domain] Cd Length: 183 Bit Score: 41.86 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASParTPSAGASPAQASPAGTPpgraSPAQASPAQASpaGTPPGRASPAQASPAGTPPgraspgrASPAQASP 81
Cdd:pfam09595 61 EQEHHENPPL--NEAAKEAPSESEDAPDI----DPNNQHPSQDR--SEAPPLEPAAKTKPSEHEP-------ANPPDASN 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 82 AQASPARAspalaslsrsssgrsssarsasvTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:pfam09595 126 RLSPPDAS-----------------------TAAIREARTFRKPSTGKRNNPSSAQSDQSPPRANHEAIGRANP 176
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
6-86 |
3.77e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 6 HGNASPARTPSAGasPAQASPAGTPPGRAS-PAQASPAQASPAGTPPGRASP-----------AQASPAGTPPGRASPGR 73
Cdd:pfam03154 178 SGAASPPSPPPPG--TTQAATAGPTPSAPSvPPQGSPATSQPPNQTQSTAAPhtliqqtptlhPQRLPSPHPPLQPMTQP 255
|
90
....*....|...
gi 116256363 74 ASPAQASPaQASP 86
Cdd:pfam03154 256 PPPSQVSP-QPLP 267
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
2-90 |
4.16e-04 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 42.69 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 2 ERDSHGNASPARTPSAGASPAQASPAGTPPgrasPAQASPAQASPAGTPPGRASPAQASpAGTPPGRASPGRASPAQAS- 80
Cdd:PHA03381 80 EDERPADPRPSRRPHAQPEASGPGPARGAR----GPAGSRGRGRRAESPSPRDPPNPKG-ASAPRGRKSACADSAALLDa 154
|
90
....*....|
gi 116256363 81 PAQASPARAS 90
Cdd:PHA03381 155 PAPAAPKRQK 164
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
11-91 |
4.60e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.03 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 11 PARTPSAGASPAQASPAGTPP------GRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQA 84
Cdd:PRK06995 66 PAAAPAAVSRPAAPAAEPAPWlvehakRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVP 145
|
....*..
gi 116256363 85 SPARASP 91
Cdd:PRK06995 146 ADAAAAV 152
|
|
| PRK12495 |
PRK12495 |
hypothetical protein; Provisional |
4-90 |
4.92e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 41.78 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGAS----PAQASPAGTPPGRASPAQASPAQASPA---GTPPGRASPAQASPAGTPPGRAS--PGRA 74
Cdd:PRK12495 76 DDAGDGAEATAPSDAGSqaspDDDAQPAAEAEAADQSAPPEASSTSATdeaATDPPATAAARDGPTPDPTAQPAtpDERR 155
|
90
....*....|....*.
gi 116256363 75 SPAQASPAQASPARAS 90
Cdd:PRK12495 156 SPRQRPPVSGEPPTPS 171
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
14-87 |
5.20e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 42.48 E-value: 5.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116256363 14 TPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRAsPAQASPAQASPA 87
Cdd:PRK12373 231 LAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA-PKEAAKAAAAAA 303
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
3-145 |
5.85e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.85 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 3 RDSHGNASPARTPSAG--ASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQAS 80
Cdd:PHA03307 271 EASGWNGPSSRPGPASssSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRS 350
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116256363 81 PaqaSPARASPALASLSRSSSGRSSSARSASVTTSPT-RVYLVRATPVGAVPIRSSPARSaPATRA 145
Cdd:PHA03307 351 P---SPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRpTRRRARAAVAGRARRRDATGRF-PAGRP 412
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
21-90 |
6.16e-04 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.19 E-value: 6.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116256363 21 PAQASPAGTPPGRASPAQASPAQASPAGTPPGR-ASPAQASPAGTPPGRASPgraSPAQASPAQASPARAS 90
Cdd:TIGR00601 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMsAAPASAVEEKSPSEESAT---ATAPESPSTSVPSSGS 144
|
|
| DUF1986 |
pfam09342 |
Domain of unknown function (DUF1986); This domain is found in serine proteases and is ... |
337-436 |
7.08e-04 |
|
Domain of unknown function (DUF1986); This domain is found in serine proteases and is predicted to contain disulphide bonds.
Pssm-ID: 286432 Cd Length: 116 Bit Score: 39.45 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 337 WPWQVSLHFGTTHICGGTLIDAQWVLTAAHCFFVTREK------VLEGWKVYAGTSNLHQLPEAASIAEIIINSNytdee 410
Cdd:pfam09342 1 WPWIAKVYLDGNMICSGVLIDASWVIVSGSCLRDTNLRhqyisvVLGGAKTLKSIEGPYEQIVRVDCRHDIPESE----- 75
|
90 100
....*....|....*....|....*.
gi 116256363 411 ddydIALMRLSKPLTLSAHIHPACLP 436
Cdd:pfam09342 76 ----ISLLHLASPASFSNHVLPTFVP 97
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
6-91 |
7.21e-04 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 42.30 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 6 HGNASPARTPSAGASPAQAS-PAGTPP--GRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPgrASPAQASPA 82
Cdd:NF041121 14 QMGRAAAPPSPEGPAPTAASqPATPPPpaAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAG--AAPGAALPV 91
|
....*....
gi 116256363 83 QASPARASP 91
Cdd:NF041121 92 RVPAPPALP 100
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
6-91 |
7.61e-04 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 42.16 E-value: 7.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 6 HGNASPARTPSAGASPAQASPAGTPPGRASPAQA----SPAQAS--PAGTPPGRASPAQA-SPAGTPPGRASPGraSPAQ 78
Cdd:cd23959 159 HPPPAKPLPAAAAAQQSSASPGEVASPFASGTVSaspfATATDTapSSGAPDGFPAEASApSPFAAPASAASFP--AAPV 236
|
90
....*....|...
gi 116256363 79 ASPAQASPARASP 91
Cdd:cd23959 237 ANGEAATPTHACT 249
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
9-91 |
7.80e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 42.26 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASP-AGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPA 87
Cdd:PRK06995 42 ALADSDLAALAPPAAAAPaAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAE 121
|
....
gi 116256363 88 RASP 91
Cdd:PRK06995 122 RAAA 125
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
20-90 |
8.67e-04 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 41.78 E-value: 8.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116256363 20 SPAQASPAGTPPGRASPAQASPAQ----ASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQA-SPAQASPARAS 90
Cdd:cd23959 155 MFGQHPPPAKPLPAAAAAQQSSASpgevASPFASGTVSASPFATATDTAPSSGAPDGFPAEASApSPFAAPASAAS 230
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
7-155 |
9.82e-04 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 42.09 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GNASPARTPSAGASPAQASPAGTPPGRASPAqASPAQASPAGTPPGRASPAQASPAGTPPGRASPgrASPAQASPA--QA 84
Cdd:COG3170 108 AYAAAAAAPAAAPAPAPAAPAAAAAAADQPA-AEAAPAASGEYYPVRPGDTLWSIAARPVRPSSG--VSLDQMMVAlyRA 184
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116256363 85 SPAraspalaslsRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:COG3170 185 NPD----------AFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAP 245
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
9-91 |
1.12e-03 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 41.96 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPAR 88
Cdd:PHA03377 530 AKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPA 609
|
...
gi 116256363 89 ASP 91
Cdd:PHA03377 610 SGP 612
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
17-77 |
1.26e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 41.63 E-value: 1.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116256363 17 AGASPAQASPAgtpPGRASPAQASPaQASPAGTPPGRASPAQASPAGTPPG-RASPGRASPA 77
Cdd:PRK06975 268 AAAQPATAAPA---PSRMTDTNDSK-SVTSQPAAAAAAPAPPPNPPATPPEpPARRGRGSAA 325
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
9-155 |
1.42e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSagaSPAQASPAGTPPGRASPAqaspaqaSPAGTPPGRASPAQASPAGTPPgRASPGRASPAQASPAQASPAR 88
Cdd:PHA03307 260 PAPITLPT---RIWEASGWNGPSSRPGPA-------SSSSSPRERSPSPSPSSPGSGP-APSSPRASSSSSSSRESSSSS 328
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116256363 89 ASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:PHA03307 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVA 395
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
23-143 |
1.45e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 41.59 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 23 QASPAGtppGRASPAQASPAQASPAG-----TPPGRASPAQASPA-GTPPGRASPGRASPAQAsPAQASP-ARASPALAS 95
Cdd:PRK14959 370 SLRPSG---GGASAPSGSAAEGPASGgaatiPTPGTQGPQGTAPAaGMTPSSAAPATPAPSAA-PSPRVPwDDAPPAPPR 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 116256363 96 LSRSSSGRSSSARSASVTTSPTRVylvrATPVGAVPIRSSPARSAPAT 143
Cdd:PRK14959 446 SGIPPRPAPRMPEASPVPGAPDSV----ASASDAPPTLGDPSDTAEHT 489
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1-155 |
1.47e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAGtppGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQAS 80
Cdd:PHA03307 768 LAEALALLEPAEPQRGAGSSPPVRAEAA---FRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAAR 844
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116256363 81 PaqaSPARASPALASLSRSSSGRSSSARSASVTTSPTRvylvRATPVGAVPIRSSPARSAPATRATRESPGTSLP 155
Cdd:PHA03307 845 P---PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP----RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK 912
|
|
| PDHac_trf_long |
TIGR01348 |
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
25-87 |
1.70e-03 |
|
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase]
Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 41.01 E-value: 1.70e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116256363 25 SPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRaSPAQASPaqASPA 87
Cdd:TIGR01348 191 VAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQ-NPAKVDH--AAPA 250
|
|
| PHA03270 |
PHA03270 |
envelope glycoprotein C; Provisional |
9-67 |
1.95e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165528 [Multi-domain] Cd Length: 466 Bit Score: 41.07 E-value: 1.95e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPART-PSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPG 67
Cdd:PHA03270 19 LCAGAGaPRGAVSNASEAPTSGSPGSAEGPRTTPTPTRGKGTPTGPASPPKSGPPKSPPA 78
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
21-90 |
1.98e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 1.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 21 PAQASPAgtppgraspAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARAS 90
Cdd:PRK07994 361 PAAPLPE---------PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421
|
|
| PHA03201 |
PHA03201 |
uracil DNA glycosylase; Provisional |
1-91 |
2.00e-03 |
|
uracil DNA glycosylase; Provisional
Pssm-ID: 165468 Cd Length: 318 Bit Score: 40.65 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAGTPPgRASPAQASPAQASPAGTPPGRASPaQASPAGTPPGRASPGRASPAQAS 80
Cdd:PHA03201 1 MKRARSRSPSPPRRPSPPRPTPPRSPDASPE-ETPPSPPGPGAEPPPGRAAGPAAP-RRRPRGCPAGVTFSSSAPPRPPL 78
|
90
....*....|.
gi 116256363 81 PAQASPARASP 91
Cdd:PHA03201 79 GLDDAPAATPP 89
|
|
| PHA01929 |
PHA01929 |
putative scaffolding protein |
22-91 |
2.01e-03 |
|
putative scaffolding protein
Pssm-ID: 177328 Cd Length: 306 Bit Score: 40.42 E-value: 2.01e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116256363 22 AQASPAGTPPGRASP--AQASPAQASPAGTPPGRASPAQAsPAGTPPGRASPGRASPAQASPAQASPARASP 91
Cdd:PHA01929 17 ANVPPAAAPTPQPNPviQPQAPVQPGQPGAPQQLAIPTQQ-PQPVPTSAMTPHVVQQAPAQPAPAAPPAAGA 87
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1-156 |
2.35e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.92 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 1 MERDSHGNASPARTPSAGASPAQASPAGTPPGRASP--AQASPAQASPAGTPPGRASPAqaSPAGTPPGRA--------- 69
Cdd:PHA03307 227 SAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPitLPTRIWEASGWNGPSSRPGPA--SSSSSPRERSpspspsspg 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 70 SPGRASPAQASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRvylVRATPVGAVPIRSSPARSAPATRATRES 149
Cdd:PHA03307 305 SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSP---SRPPPPADPSSPRKRPRPSRAPSSPAAS 381
|
....*..
gi 116256363 150 PGTSLPK 156
Cdd:PHA03307 382 AGRPTRR 388
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
16-85 |
2.46e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 2.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 16 SAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQAS 85
Cdd:PHA03247 369 SAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSA 438
|
|
| PRK12495 |
PRK12495 |
hypothetical protein; Provisional |
9-89 |
2.65e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 39.47 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAqASPAGTPPGRASPAQASPAQASPAG--TPPGRASPAQASPA-GTPPGRASPGRASPAQASPAQAS 85
Cdd:PRK12495 109 ADQSAPPEASSTSA-TDEAATDPPATAAARDGPTPDPTAQpaTPDERRSPRQRPPVsGEPPTPSTPDAHVAGTLQAARES 187
|
....
gi 116256363 86 PARA 89
Cdd:PRK12495 188 LVET 191
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-160 |
2.73e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAgtPPGRASPA---QASPAQASP-----------------AGTPPGRASPAQASPA---GTP 65
Cdd:PHA03247 2492 AGAAPDPGGGGPPDPDAPP--APSRLAPAilpDEPVGEPVHprmltwirgleelasddAGDPPPPLPPAAPPAApdrSVP 2569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 66 PGRASPGRASPAQAS-------PAQA-----------SPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPV 127
Cdd:PHA03247 2570 PPRPAPRPSEPAVTSrarrpdaPPQSarprapvddrgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649
|
170 180 190
....*....|....*....|....*....|....*
gi 116256363 128 GAVPIRSSPARSAPATRATRES--PGTSLPKFTWR 160
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGraAQASSPPQRPR 2684
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
7-91 |
3.34e-03 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 40.46 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GN-ASPARTPSAGASPAQASPAGTPPGRASPAQASPaQASPAGTPPgrASPAQ-ASPAGTPP----GRASPGRASPAQAS 80
Cdd:PLN02217 564 GNpGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSP-PAGHLGSPP--ATPSKiVSPSTSPPashlGSPSTTPSSPESSI 640
|
90
....*....|.
gi 116256363 81 PAQASPArASP 91
Cdd:PLN02217 641 KVASTET-ASP 650
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
35-91 |
3.83e-03 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 40.06 E-value: 3.83e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116256363 35 SPAQASPAQASPA-GTPPGRASPAQASPAGTPPGRASPGRA---SPAQASPAQASPARASP 91
Cdd:pfam03546 245 APAAATPAQAKPAlKTPQTKASPRKGTPITPTSAKVPPVRVgtpAPWKAGTVTSPACASSP 305
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
6-91 |
3.98e-03 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 39.62 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 6 HGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAgtppgrASPAQASPAGTPPGRASPgrASPAQASPAQAS 85
Cdd:PRK10856 158 SGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPA------PAVDPQQNAVVAPSQANV--DTAATPAPAAPA 229
|
....*.
gi 116256363 86 PARASP 91
Cdd:PRK10856 230 TPDGAA 235
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
23-90 |
4.37e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 39.93 E-value: 4.37e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116256363 23 QASPAGTPPGRAS----PAQASPAQASPAG-TPPGRASPAQASPAG--TPPGRASPGRASPAQASPAQASPARAS 90
Cdd:PRK14954 381 APSPAGSPDVKKKapepDLPQPDRHPGPAKpEAPGARPAELPSPASapTPEQQPPVARSAPLPPSPQASAPRNVA 455
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
11-90 |
4.41e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 38.13 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 11 PARTPSAGASpAQASPAGTPPGRASPAQASPAqasPAGTPPGRASPAQASP---AGTPPGRASPGRASPAQAspAQASPA 87
Cdd:cd21975 78 PLRGPSVEGS-SLESGDADMGSDSDVAPASGA---AASTSPESSSDAASSPsplSLLHPGEAGLEPERPRPR--VRRGVR 151
|
...
gi 116256363 88 RAS 90
Cdd:cd21975 152 RRG 154
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
8-91 |
4.88e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 39.40 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 8 NASPARTPSAGAspAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPA 87
Cdd:PRK12373 207 NASKALAEDIGD--TVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSG 284
|
....
gi 116256363 88 RASP 91
Cdd:PRK12373 285 TAAA 288
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-156 |
5.39e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 9 ASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASP--------AGTPPGRASPAQASPAG----------------- 63
Cdd:PHA03247 257 PPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPdgvwgaalAGAPLALPAPPDPPPPApagdaeeeddedgamev 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 64 -----------------------TPP--------GRASPGRASPA----QASPAQASPARASPALASLSRSSSGRSSSAR 108
Cdd:PHA03247 337 vsplprprqhyplgfpkrrrptwTPPssledlsaGRHHPKRASLPtrkrRSARHAATPFARGPGGDDQTRPAAPVPASVP 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116256363 109 SASVTTSPTRVYLVRATPVG----------AVPIRSSPARsaPATRATRESPGTSLPK 156
Cdd:PHA03247 417 TPAPTPVPASAPPPPATPLPsaepgsddgpAPPPERQPPA--PATEPAPDDPDDATRK 472
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
33-90 |
5.66e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 39.70 E-value: 5.66e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 116256363 33 RASPAQASPAQASPAGTPPgrasPAQASPAGTPPGRASPgrASPAQASPAQASPARAS 90
Cdd:PRK06975 269 AAQPATAAPAPSRMTDTND----SKSVTSQPAAAAAAPA--PPPNPPATPPEPPARRG 320
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
11-91 |
6.01e-03 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 37.41 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 11 PARTPSAGASPAQASPAGTPPGRASPAQASPAQASpagtppgraSPAQASPAGTPPGRASPGrASPAQASPAQASPARAS 90
Cdd:pfam05104 69 PDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPAP---------SPKEKKKKEKKSAKVEPA-ETPEAVQPKPALEKEEP 138
|
.
gi 116256363 91 P 91
Cdd:pfam05104 139 P 139
|
|
| motB |
PRK12799 |
flagellar motor protein MotB; Reviewed |
4-149 |
8.90e-03 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 38.54 E-value: 8.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 4 DSHGNASPARTPSAGASPAQASPAGTPPGRASPAQ-ASPAQASPAGTPPGRASPAQASpAGTPPGRASPGRASPAQASPA 82
Cdd:PRK12799 294 DTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAViPSSVTTQSATTTQASAVALSSA-GVLPSDVTLPGTVALPAAEPV 372
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116256363 83 QASPARASPALASLSRsssgrsssarsasvTTSPTRvylVRATPVGAVPirSSPARSAPATRATRES 149
Cdd:PRK12799 373 NMQPQPMSTTETQQSS--------------TGNITS---TANGPTTSLP--AAPASNIPVSPTSRDA 420
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
2-78 |
9.08e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 37.36 E-value: 9.08e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116256363 2 ERDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPaqASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQ 78
Cdd:cd21975 85 EGSSLESGDADMGSDSDVAPASGAAASTSPESSSDAASSP--SPLSLLHPGEAGLEPERPRPRVRRGVRRRGVTPAA 159
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
5-91 |
9.69e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.00 E-value: 9.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 5 SHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTppGRASPGRASPAQASPAQ- 83
Cdd:PHA03307 331 SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA--RAAVAGRARRRDATGRFp 408
|
....*...
gi 116256363 84 ASPARASP 91
Cdd:PHA03307 409 AGRPRPSP 416
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
7-91 |
9.87e-03 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 38.70 E-value: 9.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116256363 7 GNASPARTPSAGASPAQASPAgtPPGRAspaqASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASP 86
Cdd:cd23959 157 GQHPPPAKPLPAAAAAQQSSA--SPGEV----ASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAAS 230
|
....*
gi 116256363 87 ARASP 91
Cdd:cd23959 231 FPAAP 235
|
|
| |
