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Conserved domains on  [gi|122937295|ref|NP_001073919|]
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BEN domain-containing protein 3 [Homo sapiens]

Protein Classification

BEN domain-containing protein( domain architecture ID 10565270)

BEN domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 737-816 2.32e-21

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 88.57  E-value: 2.32e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295   737 GNFAARLLVRLFPELFTAENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 815
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 122937295   816 K 816
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 408-481 1.99e-18

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 80.49  E-value: 1.99e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122937295   408 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRINDELE 481
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINNKCR 74
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 265-340 6.77e-18

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


:

Pssm-ID: 463133  Cd Length: 76  Bit Score: 78.57  E-value: 6.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  265 DLACRLLVQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPSVKDTAvWQAECLPQLNDFFSR 338
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 122937295  339 FW 340
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 571-645 8.78e-16

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 72.78  E-value: 8.78e-16
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 122937295   571 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 645
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
 
Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 737-816 2.32e-21

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 88.57  E-value: 2.32e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295   737 GNFAARLLVRLFPELFTAENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 815
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 122937295   816 K 816
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 408-481 1.99e-18

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 80.49  E-value: 1.99e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122937295   408 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRINDELE 481
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINNKCR 74
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 265-340 6.77e-18

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 78.57  E-value: 6.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  265 DLACRLLVQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPSVKDTAvWQAECLPQLNDFFSR 338
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 122937295  339 FW 340
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 264-343 9.74e-18

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 78.56  E-value: 9.74e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295   264 GDLACRLLVQLFPELFSDVDFSRGCSA-CGFAAKRKLESLHLQLIRNYVEVYYPSVKDTAVWQAeCLPQLNDFFSRFWAQ 342
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRSrTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRRLRRR 79


                   .
gi 122937295   343 R 343
Cdd:smart01025  80 K 80
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 738-812 5.83e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 75.88  E-value: 5.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  738 NFAARLLVRLFPElftaenlRLQYNHSG--------ACNKKQLDPTRLRLIRHYVEAVYPVEKMEEvWHYECIPSIDERC 809
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGtgkrspafPPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTI 72


                  ...
gi 122937295  810 RRP 812
Cdd:pfam10523  73 RRK 75
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 571-645 8.78e-16

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 72.78  E-value: 8.78e-16
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 122937295   571 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 645
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 572-647 3.17e-14

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 68.17  E-value: 3.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  572 NFASRLLVHLFPElfthenlRKQYNCSGS--------LGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTlEFVGKLDERC 643
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGTgkrspafpPNKKGLDPLKVQLIRNYVEERFPENKNEEWWN-ECVPRINKTI 72


                  ....
gi 122937295  644 RRRD 647
Cdd:pfam10523  73 RRKC 76
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 409-481 1.14e-11

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 60.85  E-value: 1.14e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122937295  409 EFAVFLLHRLFPE--LFDHRKLGEQYSCYgDGGKQELDPQRLQIIRNYTEIYFPDMQEEEaWLQQCAQRINDELE 481
Cdd:pfam10523   1 KLARKLLVKLFPEdtLANHSGTGKRSPAF-PPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIR 73
 
Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 737-816 2.32e-21

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 88.57  E-value: 2.32e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295   737 GNFAARLLVRLFPELFTAENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 815
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 122937295   816 K 816
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 408-481 1.99e-18

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 80.49  E-value: 1.99e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122937295   408 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRINDELE 481
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINNKCR 74
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 265-340 6.77e-18

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 78.57  E-value: 6.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  265 DLACRLLVQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPSVKDTAvWQAECLPQLNDFFSR 338
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 122937295  339 FW 340
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 264-343 9.74e-18

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 78.56  E-value: 9.74e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295   264 GDLACRLLVQLFPELFSDVDFSRGCSA-CGFAAKRKLESLHLQLIRNYVEVYYPSVKDTAVWQAeCLPQLNDFFSRFWAQ 342
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRSrTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRRLRRR 79


                   .
gi 122937295   343 R 343
Cdd:smart01025  80 K 80
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 738-812 5.83e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 75.88  E-value: 5.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  738 NFAARLLVRLFPElftaenlRLQYNHSG--------ACNKKQLDPTRLRLIRHYVEAVYPVEKMEEvWHYECIPSIDERC 809
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGtgkrspafPPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTI 72


                  ...
gi 122937295  810 RRP 812
Cdd:pfam10523  73 RRK 75
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 571-645 8.78e-16

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 72.78  E-value: 8.78e-16
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 122937295   571 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 645
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 572-647 3.17e-14

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 68.17  E-value: 3.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937295  572 NFASRLLVHLFPElfthenlRKQYNCSGS--------LGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTlEFVGKLDERC 643
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGTgkrspafpPNKKGLDPLKVQLIRNYVEERFPENKNEEWWN-ECVPRINKTI 72


                  ....
gi 122937295  644 RRRD 647
Cdd:pfam10523  73 RRKC 76
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 409-481 1.14e-11

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 60.85  E-value: 1.14e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122937295  409 EFAVFLLHRLFPE--LFDHRKLGEQYSCYgDGGKQELDPQRLQIIRNYTEIYFPDMQEEEaWLQQCAQRINDELE 481
Cdd:pfam10523   1 KLARKLLVKLFPEdtLANHSGTGKRSPAF-PPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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