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Conserved domains on  [gi|122937329|ref|NP_001073937|]
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syncollin precursor [Homo sapiens]

Protein Classification

Syncollin domain-containing protein( domain architecture ID 10633488)

Syncollin domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Syncollin pfam15138
Syncollin; This family has a role in zymogen granule exocytosis.
22-133 3.94e-66

Syncollin; This family has a role in zymogen granule exocytosis.


:

Pssm-ID: 464524  Cd Length: 112  Bit Score: 195.72  E-value: 3.94e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937329   22 ACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTH 101
Cdd:pfam15138   1 QCPVPADLKDESGTKLCARMYEHSSPYYDQSCQGAYLDVEPGDDFPYIPSGWNNRISSLVVSRRCELTVWSRSGKGGKKR 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 122937329  102 KFSAGTYPRLEEYRRGILGDWSNAISALYCRC 133
Cdd:pfam15138  81 KFSAGTYYRLKEYRRGLFGNWNNAISGYYCTC 112
 
Name Accession Description Interval E-value
Syncollin pfam15138
Syncollin; This family has a role in zymogen granule exocytosis.
22-133 3.94e-66

Syncollin; This family has a role in zymogen granule exocytosis.


Pssm-ID: 464524  Cd Length: 112  Bit Score: 195.72  E-value: 3.94e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937329   22 ACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTH 101
Cdd:pfam15138   1 QCPVPADLKDESGTKLCARMYEHSSPYYDQSCQGAYLDVEPGDDFPYIPSGWNNRISSLVVSRRCELTVWSRSGKGGKKR 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 122937329  102 KFSAGTYPRLEEYRRGILGDWSNAISALYCRC 133
Cdd:pfam15138  81 KFSAGTYYRLKEYRRGLFGNWNNAISGYYCTC 112
 
Name Accession Description Interval E-value
Syncollin pfam15138
Syncollin; This family has a role in zymogen granule exocytosis.
22-133 3.94e-66

Syncollin; This family has a role in zymogen granule exocytosis.


Pssm-ID: 464524  Cd Length: 112  Bit Score: 195.72  E-value: 3.94e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937329   22 ACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTH 101
Cdd:pfam15138   1 QCPVPADLKDESGTKLCARMYEHSSPYYDQSCQGAYLDVEPGDDFPYIPSGWNNRISSLVVSRRCELTVWSRSGKGGKKR 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 122937329  102 KFSAGTYPRLEEYRRGILGDWSNAISALYCRC 133
Cdd:pfam15138  81 KFSAGTYYRLKEYRRGLFGNWNNAISGYYCTC 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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