|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
82-393 |
6.45e-99 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 297.60 E-value: 6.45e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 82 QEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSA-IFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQV 160
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAePSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 161 LEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIYEQELKDLAAQVKDVSVTVGM 240
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 241 DSRCHIDLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHC 320
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125628632 321 LKLEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGR 393
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
85-375 |
2.53e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 85 EEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQVLEKV 164
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 165 EEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIY---EQELKDLAAQVKDVSVTVGMD 241
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlRERLESLERRIAATERRLEDL 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 242 SRCHIDLSGIVEEVKAQYDavaarSLEEAEAYSRSQLEE------------QAARSAEY--GSSLQSSRSEIADLNVRIQ 307
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIE-----ELEELIEELESELEAllnerasleealALLRSELEelSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 125628632 308 KLRSQILSVKSHC----LKLEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLA 375
Cdd:TIGR02168 919 ELREKLAQLELRLegleVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLA 990
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-395 |
1.46e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 199 RTELETKLKSLESFVELMktiyeQELKDLAAQVKDVSVTVgmdsrchidLSGIVEEVKAQYDAvaarsLEEAEAYSRSQL 278
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-----ERYKELKAELRELELAL---------LVLRLEELREELEE-----LQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 279 EEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQGELAFQDAK---TKLAQLEAALQQA 355
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeleAQLEELESKLDEL 335
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 125628632 356 KQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGRMD 395
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
85-357 |
2.47e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 85 EEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRkvsqergQLEANLLQVLEKV 164
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE-------ELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 165 EEFRIRYEDEISKRTDMEFTFVQLKKDLDAecLHRTELETKLKSLEsfvELMKTIyEQELKDLAAQVKDVSVTVGMDSRC 244
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQ---AELSKL-EEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 245 HIDLSGIVEEVKAQYDAvaarsLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLE 324
Cdd:TIGR02169 828 KEYLEKEIQELQEQRID-----LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|...
gi 125628632 325 ENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQ 357
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
130-381 |
4.17e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 130 HLYEEYQGRLQEELRKVSQERGQLEANLLQVLEKVEEFR---IRYEDEISKRTDMEFTFV----QLKKDLDAECLHRTEL 202
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRlelEELELELEEAQAEEYELLaelaRLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 203 ETKLKSLESFVELMktiyEQELKDLAAQVKDVSVTVgmdsrchIDLSGIVEEVKAQYDAVAARSLEEAEAYS-------- 274
Cdd:COG1196 315 EERLEELEEELAEL----EEELEELEEELEELEEEL-------EEAEEELEEAEAELAEAEEALLEAEAELAeaeeelee 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 275 -RSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHclklEENIKTAEEQGELAFQDAKTKLAQLEAALQ 353
Cdd:COG1196 384 lAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA----LAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260
....*....|....*....|....*...
gi 125628632 354 QAKQDMARQLRKYQELMNVKLALDIEIA 381
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELA 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
68-382 |
4.90e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 68 LDVKLDPAVQQLKNQEKEEMKALndKFASLIGKVQALEQrnQLLETRWSFLQGQDSAIfdlghlyEEYQGRLQEELRKVS 147
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAE--RYQALLKEKREYEG--YELLKEKEALERQKEAI-------ERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 148 QERGQLEANLLQVLEKVEEFriryEDEISKRTDMEFtfVQLKKDLDaeclhrtELETKLKSLESFVELmktiYEQELKDL 227
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEEL----NKKIKDLGEEEQ--LRVKEKIG-------ELEAEIASLERSIAE----KERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 228 AAQVkdvsvtvgmdsrchidlsgiveevkAQYDAVAARSLEEAEAYSRsQLEEQAARSAEYGSSLQSSRSEIADLNVRIQ 307
Cdd:TIGR02169 321 EERL-------------------------AKLEAEIDKLLAEIEELER-EIEEERKRRDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125628632 308 KL--RSQILSVKSHCLKlEENIKTAEEQGELAFQDAK--TKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIAT 382
Cdd:TIGR02169 375 EVdkEFAETRDELKDYR-EKLEKLKREINELKRELDRlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
131-388 |
1.01e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 131 LYEEYQGRLQEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLE 210
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 211 sfvelmktiyeQELKDLAAQvkdvsvtvgmdsrcHIDLSGIVEEVKAQYDAVAARsLEEAEAY---SRSQLEEQAARSAE 287
Cdd:COG1196 323 -----------EELAELEEE--------------LEELEEELEELEEELEEAEEE-LEEAEAElaeAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 288 YGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQ 367
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260
....*....|....*....|.
gi 125628632 368 ELMNVKLALDIEIATYRKLVE 388
Cdd:COG1196 457 EEEALLELLAELLEEAALLEA 477
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
147-371 |
1.48e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 147 SQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLESFVEL---MKTIYEQE 223
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleeRIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 224 LKDLAAQVKDVSVTVGmDSRCHIDlsgIVEEVKAQYDAVAARSLEEAEAySRSQLEEQAARsaeygssLQSSRSEIADLN 303
Cdd:TIGR02168 756 LTELEAEIEELEERLE-EAEEELA---EAEAEIEELEAQIEQLKEELKA-LREALDELRAE-------LTLLNEEAANLR 823
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 125628632 304 VRIQKLRSQILSVKSHCLKLEENIKTAEEQGE---LAFQDAKTKLAQLEAALQ-------QAKQDMARQLRKYQELMN 371
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIEslaAEIEELEELIEELESELEallneraSLEEALALLRSELEELSE 901
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
127-345 |
3.80e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 127 DLGHLYEEYQGRLQEELRKVSQErgqleaNLLQVLE---KVEEFRIRYEDEISKRTDMEFTFVQLkkdldaeclHRTELE 203
Cdd:TIGR01612 664 ELSKIYEDDIDALYNELSSIVKE------NAIDNTEdkaKLDDLKSKIDKEYDKIQNMETATVEL---------HLSNIE 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 204 TKLKSLES-FVELMKTIYEQELKDLAAQVKD-------VSVTVGMDSRCHIDLS---GIVEEVKAQY-DAVAARSLEEAE 271
Cdd:TIGR01612 729 NKKNELLDiIVEIKKHIHGEINKDLNKILEDfknkekeLSNKINDYAKEKDELNkykSKISEIKNHYnDQINIDNIKDED 808
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125628632 272 AysrsqlEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQGELAFQDAKTKL 345
Cdd:TIGR01612 809 A------KQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKI 876
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-311 |
4.26e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 84 KEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQVLEK 163
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 164 VEEFRIRYEDEISKRTDMEF-------TFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIYEQELKDLA-AQVKDVS 235
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeAELKELQ 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125628632 236 VTVGmdsrchiDLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQAARsaeygSSLQSSRSEIADLNVRIQKLRS 311
Cdd:TIGR02168 440 AELE-------ELEEELEELQEELERLEEALEELREELEEAEQALDAAE-----RELAQLQARLDSLERLQENLEG 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
75-393 |
6.38e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 75 AVQQLKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQ---EELRKVSQERG 151
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEallERLERLEEELE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 152 QLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIY---EQELKDLA 228
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlllLEAEADYE 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 229 AQVKDVSVTVGMDSRCHIDLSGIVE-EVKAQYDAVAARSLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVriQ 307
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLiGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK--I 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 308 KLRSQILSVKSHCLKLEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLV 387
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
....*.
gi 125628632 388 EGEEGR 393
Cdd:COG1196 663 TGGSRR 668
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
127-365 |
8.62e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 44.68 E-value: 8.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 127 DLGHLYEEYQGRLQEeLRKVSQERGQLEANLLQVLEKVEefRIRYE-DEISKrtdmeftfVQLKKDLDAEclhrteLETK 205
Cdd:COG0497 152 GLEELLEEYREAYRA-WRALKKELEELRADEAERARELD--LLRFQlEELEA--------AALQPGEEEE------LEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 206 LKSLESFVELMKTIYE--QELKDlaaqvKDVSVtVGMDSRCHIDLSGIVEeVKAQYDAVAARsLEEAEAysrsQLEEQAA 283
Cdd:COG0497 215 RRRLSNAEKLREALQEalEALSG-----GEGGA-LDLLGQALRALERLAE-YDPSLAELAER-LESALI----ELEEAAS 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 284 RSAEYGSSLQSSRSEIADLNVRIQKLRSqiLSVKSHClKLEENIKTAEE-QGELA-FQDAKTKLAQLEAALQQAKQDM-- 359
Cdd:COG0497 283 ELRRYLDSLEFDPERLEEVEERLALLRR--LARKYGV-TVEELLAYAEElRAELAeLENSDERLEELEAELAEAEAELle 359
|
....*..
gi 125628632 360 -ARQLRK 365
Cdd:COG0497 360 aAEKLSA 366
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
75-301 |
1.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 75 AVQQLKNQEK--EEMKALNDKFASLIGKVQALEQrnqLLETRWSFLQGQDSAifdlghLYEEYQGRLQEELRKVSQERGQ 152
Cdd:COG4913 243 ALEDAREQIEllEPIRELAERYAAARERLAELEY---LRAALRLWFAQRRLE------LLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 153 LEANLLQVLEKVEEFRIRYEDEISKRTDmeftfvQLKKDLDAECLHRTELETKLKSLESFVELMKTIYEQELKDLAAQVK 232
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRLE------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125628632 233 DVSVTVGmdsrchiDLSGIVEEVKAQYDAVAARS--LEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIAD 301
Cdd:COG4913 388 EAAALLE-------ALEEELEALEEALAEAEAALrdLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
221-404 |
2.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 221 EQELKDLAAQVKDVSVTVGMDSrchidLSGIVEEVKAQYDAVAARsLEEAEAySRSQLEEQAARSAEYGSSLQSS----- 295
Cdd:COG3206 195 EAALEEFRQKNGLVDLSEEAKL-----LLQQLSELESQLAEARAE-LAEAEA-RLAALRAQLGSGPDALPELLQSpviqq 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 296 --------RSEIADLNVR-------IQKLRSQILSVKShclKLEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMA 360
Cdd:COG3206 268 lraqlaelEAELAELSARytpnhpdVIALRAQIAALRA---QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLA 344
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 125628632 361 RQLRKYQELMNVKLALDIEIATYRKLVE-----GEEGRMDSPSATVVSA 404
Cdd:COG3206 345 ELPELEAELRRLEREVEVARELYESLLQrleeaRLAEALTVGNVRVIDP 393
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
28-410 |
2.35e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 28 TSGWDSCRAPGPGFSSRSLTG-----CWSAGTISKVTVNPgllvPLDVKLDPAVQQLKNQEKEEMKALNDKFASLIGKVQ 102
Cdd:pfam15921 16 SSGITSNRGSSSPFFVSSIRGtiienTSSTGTFTQIPIFP----KYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 103 A-LEQRNQLLETRWSFLQgqdSAIFDLGHLYEEYQ---GRLQEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISkr 178
Cdd:pfam15921 92 RrLNESNELHEKQKFYLR---QSVIDLQTKLQEMQmerDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLE-- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 179 tDMEFTFVQLKKDLDAeclHRTELETKLKSLESFVELM-KTIYEQE------LKDLAAQVKdvSVTVGMDSRCHIdLSGI 251
Cdd:pfam15921 167 -DSNTQIEQLRKMMLS---HEGVLQEIRSILVDFEEASgKKIYEHDsmstmhFRSLGSAIS--KILRELDTEISY-LKGR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 252 VEEVKAQYDAVAARSLEEAEAYsrsqLEEQAARSAEYgssLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAE 331
Cdd:pfam15921 240 IFPVEDQLEALKSESQNKIELL----LQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQN 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 332 EQGELAFQDAKTKLAQLEAALQQAK---QDMARQLRKYQELMNVKLAldiEIATYRKLVEGEEGRMDSPSATVVSAVQSR 408
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKrmyEDKIEELEKQLVLANSELT---EARTERDQFSQESGNLDDQLQKLLADLHKR 389
|
..
gi 125628632 409 CK 410
Cdd:pfam15921 390 EK 391
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-356 |
2.55e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 78 QLKNQEKE------EMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGqdsaifdlghlyeeyqgrLQEELRKVSQERG 151
Cdd:PRK03918 194 LIKEKEKEleevlrEINEISSELPELREELEKLEKEVKELEELKEEIEE------------------LEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 152 QLEANLLQVLEKVEEFRIRYEDEISKRTDMEftfvQLKKDLDaECLHRTELETKLKSLESFVELMKTIYEQELKDLAAQV 231
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEEKVKELK----ELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 232 KDVSvtvGMDSRCHiDLSGIVEEVKaqydavaaRSLEEAEAYSRsQLEEQAARSAEygssLQSSRSEIADLNvrIQKLRS 311
Cdd:PRK03918 331 KELE---EKEERLE-ELKKKLKELE--------KRLEELEERHE-LYEEAKAKKEE----LERLKKRLTGLT--PEKLEK 391
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 125628632 312 QILSVKSHCLKLEENIKT-AEEQGELafqdaKTKLAQLEAALQQAK 356
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKiTARIGEL-----KKEIKELKKAIEELK 432
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
221-361 |
3.79e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.26 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 221 EQELKDLAAQVKDVSVTVGMDSRCHIDLSGIVEEVKAQYDAVAA-RS-LEEAEAYSRSQLEEQAARSAEYGSSL------ 292
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAeRSrLQALLAELAGAGAAAEGRAGELAQELdsekqv 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125628632 293 -QSSRSEIADLNVRIQKLRSQILSvkshclkLEENIKTAEEQGelafQDAKTKLA----QLEAALQQAKQDMAR 361
Cdd:PRK09039 132 sARALAQVELLNQQIAALRRQLAA-------LEAALDASEKRD----RESQAKIAdlgrRLNVALAQRVQELNR 194
|
|
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
333-413 |
4.44e-04 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 42.08 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 333 QGELAFQDAKTKLAQLEAALQQAKQDMARqlrkYQELMNVKLALDIEIATYRKLVEGEEGRMDSPSATVVSA-VQ---SR 408
Cdd:PRK11556 122 PFKVALAQAQGQLAKDQATLANARRDLAR----YQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAqLQldySR 197
|
....*
gi 125628632 409 CkTAP 413
Cdd:PRK11556 198 I-TAP 201
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
85-363 |
4.47e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 85 EEMK-----ALNDKFASLI------GKVQaLEQRNQLLET----RWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVS-Q 148
Cdd:PRK05771 4 VRMKkvlivTLKSYKDEVLealhelGVVH-IEDLKEELSNerlrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSvK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 149 ERGQLEANLLQVLEKVEEFRIRYEDEISKrtdmeftfvqlkkdLDAEclhRTELETKLKSLESFVEL-MKTIYEQELKDL 227
Cdd:PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISE--------------LENE---IKELEQEIERLEPWGNFdLDLSLLLGFKYV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 228 AAQVKDVSVTVGMDSRCHIDLSGIVEEVKA-QYDAVAARSLEEAEAYSRSQLEEQAARSAEYGSS------LQSSRSEIA 300
Cdd:PRK05771 146 SVFVGTVPEDKLEELKLESDVENVEYISTDkGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEgtpselIREIKEELE 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125628632 301 DLNVRIQKLRSQILSVKShclKLEENIKTAEEQGElafqdakTKLAQLEAALQQAKQDMARQL 363
Cdd:PRK05771 226 EIEKERESLLEELKELAK---KYLEELLALYEYLE-------IELERAEALSKFLKTDKTFAI 278
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
77-367 |
4.58e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 77 QQLKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQdsAIFDLGHLYEEYQGRLQeelrkVSQERGQLEAN 156
Cdd:pfam15921 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQ--LVLANSELTEARTERDQ-----FSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 157 LLQVLEKVE--EFRIRYEDEISKR-----TDMEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMktiYEQELKDLAA 229
Cdd:pfam15921 379 LQKLLADLHkrEKELSLEKEQNKRlwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ---MERQMAAIQG 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 230 QVKDV----SVTVGMDSRCHIdLSGIVEEVKAQydavaarsleeaeaysRSQLEEQAARSAEYGSSLQSSRSEIADLNVR 305
Cdd:pfam15921 456 KNESLekvsSLTAQLESTKEM-LRKVVEELTAK----------------KMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125628632 306 IQKLRSQIlsvkshCLKLEE--NIKTAEEQgelaFQDAKTKLAQLEaaLQQAKQDMARQLRKYQ 367
Cdd:pfam15921 519 ITKLRSRV------DLKLQElqHLKNEGDH----LRNVQTECEALK--LQMAEKDKVIEILRQQ 570
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
76-335 |
7.25e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 76 VQQLKNQEkEEMKALNDKFASLIGKVQALEQ-----RNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQER 150
Cdd:pfam05483 512 TLELKKHQ-EDIINCKKQEERMLKQIENLEEkemnlRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMK 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 151 gqLEANLLQVLEKVEEFRIRYEDEISKRTD-MEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIYEQELKD--- 226
Cdd:pfam05483 591 --ILENKCNNLKKQIENKNKNIEELHQENKaLKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDkki 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 227 ----LAAQVKDVSVTVG--------MDSRCH---IDLSGIVEEVKAQYDAVaarsleeaeaysrsqLEEQAARSAEYGSS 291
Cdd:pfam05483 669 seekLLEEVEKAKAIADeavklqkeIDKRCQhkiAEMVALMEKHKHQYDKI---------------IEERDSELGLYKNK 733
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 125628632 292 LQSSRSEIADLNVRIQKLRSQILSVKSHC-LKLEENIKTAEEQGE 335
Cdd:pfam05483 734 EQEQSSAKAALEIELSNIKAELLSLKKQLeIEKEEKEKLKMEAKE 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
261-367 |
9.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 261 AVAARSLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQgelaFQD 340
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAE 87
|
90 100
....*....|....*....|....*..
gi 125628632 341 AKTKLAQLEAALQQAKQDMARQLRKYQ 367
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALY 114
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
272-368 |
1.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 272 AYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQgelafqdaktkLAQLEAA 351
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAE-----------IAEAEAE 80
|
90
....*....|....*..
gi 125628632 352 LQQAKQDMARQLRKYQE 368
Cdd:COG3883 81 IEERREELGERARALYR 97
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
136-372 |
1.39e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 136 QGRLQEELrkvsQERGQLEANLLQVLEKVEEFRIRYEDEiskRTDMEFTFVQLKKDLDaeclhrtELETKLKSLESFVEL 215
Cdd:pfam07888 33 QNRLEECL----QERAELLQAQEAANRQREKEKERYKRD---REQWERQRRELESRVA-------ELKEELRQSREKHEE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 216 MKTIY--EQELKDLAAQVKDVSVTVGMDSRCHI----DLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQAARSAeYG 289
Cdd:pfam07888 99 LEEKYkeLSASSEELSEEKDALLAQRAAHEARIreleEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ-LQ 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 290 SSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQGELAFQdaktKLAQLEAALQqakqdmarQLRKYQEL 369
Cdd:pfam07888 178 AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHR----KEAENEALLE--------ELRSLQER 245
|
...
gi 125628632 370 MNV 372
Cdd:pfam07888 246 LNA 248
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
100-344 |
1.99e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 100 KVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEAnllqvLEKVEEFRIRYEDEISKRT 179
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-----LKKAEEEKKKVEQLKKKEA 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 180 DMEFTFVQLKKDLDAECLHRTELETKLKSLESFVELMKTIYEQELKDLAAQVKDVSvtvgmDSRCHIDLSGIVEEVKAQY 259
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE-----EAKKAEELKKKEAEEKKKA 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 260 DAVaaRSLEEAEAYSRSQL---EEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHClkLEENIKTAEEQGEL 336
Cdd:PTZ00121 1719 EEL--KKAEEENKIKAEEAkkeAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRM 1794
|
....*...
gi 125628632 337 AFqDAKTK 344
Cdd:PTZ00121 1795 EV-DKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-391 |
2.18e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 252 VEEVKAQYDAVAAR--SLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKT 329
Cdd:COG1196 283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125628632 330 AEEQG---ELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEE 391
Cdd:COG1196 363 AEEALleaEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
67-215 |
2.41e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 67 PLDVKLDPAVQQLKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRwsfLQGQDSAIFdlghlyeeyqgRLQEELRKV 146
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAE---LEEKDERIE-----------RLERELSEA 453
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125628632 147 SQERGQleanllqvlekveefRIRYEDEISKRtdmEFTFVQLKKDLDAECLHRTELETKLKSLESFVEL 215
Cdd:COG2433 454 RSEERR---------------EIRKDREISRL---DREIERLERELEEERERIEELKRKLERLKELWKL 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-395 |
2.71e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 252 VEEVKAQYDAVAARSLEEAEAYSRSQLEEQAARS--AEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENI-- 327
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAelARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELee 341
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125628632 328 -----KTAEEQ---GELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGRMD 395
Cdd:COG1196 342 leeelEEAEEEleeAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
99-357 |
4.11e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.44 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 99 GKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQV------------------ 160
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdelngelsaadaavakd 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 161 ---LEKVEEFRIRYEDEiskrtDMEftfvQLKKDLDAECLHRTELETKLKSLESFVELMKTIyEQELKDLAAQVkdvsvt 237
Cdd:pfam12128 321 rseLEALEDQHGAFLDA-----DIE----TAAADQEQLPSWQSELENLEERLKALTGKHQDV-TAKYNRRRSKI------ 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 238 vgmDSRCHIDLSGIVEEVKAQYD------AVAARSLEEAEAYSRSQLEEQAARSAEYGSSLQSSRSE------------- 298
Cdd:pfam12128 385 ---KEQNNRDIAGIKDKLAKIREardrqlAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGElklrlnqatatpe 461
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125628632 299 ----IADLNVRIQKLRSQILSVKSHCLKL---EENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQ 357
Cdd:pfam12128 462 lllqLENFDERIERAREEQEAANAEVERLqseLRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
133-349 |
4.65e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.28 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 133 EEYQGRLQEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEftfvQLKKDLDAECLHRTELETKLKSLESF 212
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 213 VELMKtiyeQELKDLAAQVKDVSVtvgmdsrchidlsgiVEEVKAQYDAVAARSLEEAEAYSRsqLEEQAARSAEYGSSL 292
Cdd:PRK03918 268 IEELK----KEIEELEEKVKELKE---------------LKEKAEEYIKLSEFYEEYLDELRE--IEKRLSRLEEEINGI 326
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 125628632 293 QSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKtaeeqgelAFQDAKTKLAQLE 349
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHE--------LYEEAKAKKEELE 375
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
253-360 |
5.05e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.12 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 253 EEVKAQYDAVAARSLEEAEAYSRSQLEEQAARSAEygsSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEE 332
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLD---KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR 115
|
90 100 110
....*....|....*....|....*....|
gi 125628632 333 Q--GELAFQDAKTKLAQLEAALQQAKQDMA 360
Cdd:PRK11281 116 EtlSTLSLRQLESRLAQTLDQLQNAQNDLA 145
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
268-351 |
5.39e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 39.00 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 268 EEAEAYSRSQLEEQAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVK-----------------SHCLKLEENIKTA 330
Cdd:PRK10636 534 KENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEeklgdselydqsrkaelTACLQQQASAKSG 613
|
90 100
....*....|....*....|.
gi 125628632 331 EEQGELAFQDAKTKLAQLEAA 351
Cdd:PRK10636 614 LEECEMAWLEAQEQLEQMLLE 634
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
68-211 |
7.30e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 37.98 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125628632 68 LDVKLDpAVQQLKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRwsfLQGQDSAIFDLGHLYEEYQGR--------- 138
Cdd:COG1579 15 LDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKE---IKRLELEIEEVEARIKKYEEQlgnvrnnke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125628632 139 ---LQEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAEclhRTELETKLKSLES 211
Cdd:COG1579 91 yeaLQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE---LAELEAELEELEA 163
|
|
| |
