|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
131-1699 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 999.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 131 AAVVFE--HPFNHSkepLPLAVKYHLRFSytrrnymwtqtgsffLKETEgwHTTSLFPLFPNPGPREPTSPDGGepgYIR 208
Cdd:TIGR01257 549 AGVVFPdmYPWTSS---LPPHVKYKIRMD---------------IDVVE--KTNKIKDRYWDSGPRADPVEDFR---YIW 605
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 209 EGFLAVQHAVDRAIMEYHADAATRqlfqrLTVTIKRFPYPPFIADPFLVAIQYQLPLLLLLSFTYTALTIARAVVQEKER 288
Cdd:TIGR01257 606 GGFAYLQDMVEQGITRSQMQAEPP-----VGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKEL 680
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 289 RLKEYMRMMGLSSWLHWSAWFLLFFLFLLIAASFMTLLFCvkvkpNVAVLSRSDPSLVLAFLLCFAISTISFSFMVSTFF 368
Cdd:TIGR01257 681 RLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM-----HGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFF 755
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 369 SKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFC 448
Cdd:TIGR01257 756 SKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFS 835
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 449 FGQVLGMLLLDSVLYGLVTWYMEAVFPGQFGVPQPWYFFIMPSYWCG-------KPRAVAGKE---EEDSDPE--KALRN 516
Cdd:TIGR01257 836 FLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGgegcstrEERALEKTEpltEEMEDPEhpEGIND 915
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 517 EYFEAEPEDLVAGIKIKHLSKVFRVGNkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYE 596
Cdd:TIGR01257 916 SFFERELPGLVPGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD 993
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 597 ISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIG 676
Cdd:TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 677 IALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGA 756
Cdd:TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 757 GYHMTLVKE--------------------------PHC----NPE--------DISQLVHHHVPNATLESSAGAELSFIL 798
Cdd:TIGR01257 1154 GFYLTLVRKmkniqsqrggcegtcsctskgfstrcPARvdeiTPEqvldgdvnELMDLVYHHVPEAKLVECIGQELIFLL 1233
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 799 PRES-THR-FEGLFAKLEKKQKELGIASFGASITTMEEVFLRVGKLVDS-SMDIQAIQLPALQY--QH-----ERRASDW 868
Cdd:TIGR01257 1234 PNKNfKQRaYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSgSLFAGGAQQKRENAnlRHpcsgpTEKAGQT 1313
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 869 AVDSNLCGAMDPSDGIGAL--IEEERTAVKLNTGLALHCQQFWAMFLKKAAYSWREWKMVAAQVLVPLTCVTLALLAINY 946
Cdd:TIGR01257 1314 PQASHTCSPGQPAAHPEGQppPEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSII 1393
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 947 SSELFDDPMLRLTLGEYGRTVVPFSV--PGTSQLG-----------------------------------QQLSEHLKDA 989
Cdd:TIGR01257 1394 IPPFGEYPALTLHPWMYGQQYTFFSMdePNSEHLEvladvllnkpgfgnrclkeewlpeypcgnstpwktPSVSPNITHL 1473
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 990 LQA---------------------------EG----------QEPREVLGDL-----EEFLI------FRASVEG----- 1016
Cdd:TIGR01257 1474 FQKqkwtaahpspscrcstrekltmlpecpEGagglpppqrtQRSTEILQDLtdrniSDFLVktypalIRSSLKSkfwvn 1553
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1017 ----GG-----------FNERCLVAAsFRDVGERTVVNA--------------------------LFNNQAYHSPATALA 1055
Cdd:TIGR01257 1554 eqryGGisiggklpaipITGEALVGF-LSDLGQMMNVSGgpvtreaskempdflkhletednikvWFNNKGWHALVSFLN 1632
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1056 VVdnllfkllcgpHASIVVSNFPQPRS-----------ALQAAKDQFNE---GRKGFD--IALNLLFAMAFLASTFSILA 1119
Cdd:TIGR01257 1633 VA-----------HNAILRASLPKDRDpeeygitvisqPLNLTKEQLSEitvLTTSVDavVAICVIFAMSFVPASFVLYL 1701
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1120 VSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVFKAFDVRAFTRDGHMADTLLLLLLYGWAIIPLMYLM 1199
Cdd:TIGR01257 1702 IQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPA 1781
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1200 NFFFLGAATAYTRLTIFNILSGI----ATFLMV------TIMRIPAVkleelsktLDHVFLVLPNHCLGMAVSSFyenye 1269
Cdd:TIGR01257 1782 SFLFDVPSTAYVALSCANLFIGInssaITFVLElfennrTLLRFNAM--------LRKLLIVFPHFCLGRGLIDL----- 1848
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1270 trrycTSSEVAAHYCKKYNIQYQENFYAWSApgVGRFVASMAASGCAYLILLFLIETNLLqrlrgilcalrRRRTLTELy 1349
Cdd:TIGR01257 1849 -----ALSQAVTDVYAQFGEEHSANPFQWDL--IGKNLVAMAVEGVVYFLLTLLIQHHFF-----------LSRWIAEP- 1909
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1350 TRMPVLPEDQDVADERTRILAPSPDSLLhtpLIIKELSKVYE-QRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKM 1428
Cdd:TIGR01257 1910 AKEPIFDEDDDVAEERQRIISGGNKTDI---LRLNELTKVYSgTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKM 1984
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1429 LTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHA 1508
Cdd:TIGR01257 1985 LTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA 2064
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1509 NKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMV 1588
Cdd:TIGR01257 2065 DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMV 2144
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1589 QGQFKCLGSPQHLKSKFGSGYSLRAKVQSEGQQ--EALEEFKAFVDLTFPGSVLEDEHQGMVHYHLPGRDLswAKVFGIL 1666
Cdd:TIGR01257 2145 KGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDllPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSL--ARIFQLL 2222
|
1770 1780 1790
....*....|....*....|....*....|...
gi 116734710 1667 EKAKEKYGVDDYSVSQISLEQVFLSFAHLQPPT 1699
Cdd:TIGR01257 2223 ISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTET 2255
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
530-751 |
1.37e-119 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 374.92 E-value: 1.37e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLK 751
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1381-1602 |
1.42e-114 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 361.05 E-value: 1.42e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1541 PSTGMDPVARRLLWDTVARAReSGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1602
Cdd:cd03263 160 PTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1381-1634 |
3.42e-83 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 272.71 E-value: 3.42e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:COG1131 1 IEVRGLTKRYGDKT---ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:COG1131 78 VPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFgsgyslrakvqsegq 1620
Cdd:COG1131 158 PTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL--------------- 222
|
250
....*....|....
gi 116734710 1621 qeaLEEfkAFVDLT 1634
Cdd:COG1131 223 ---LED--VFLELT 231
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
530-746 |
4.03e-82 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 269.63 E-value: 4.03e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:COG1131 1 IEVRGLTKRY----GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:COG1131 77 YVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG1131 157 EPTSGLDPEARRELWELLRELAAEgKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGT 214
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
530-741 |
1.81e-67 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 224.97 E-value: 1.81e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYfyaqlkglsrqkcpeevkqmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELKKEgKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
530-751 |
7.46e-65 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 219.55 E-value: 7.46e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03265 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKS--DRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLK 751
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEefGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1381-1602 |
2.97e-64 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 217.62 E-value: 2.97e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQrvpLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1541 PSTGMDPVARRLLWDTV-ARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1602
Cdd:cd03265 158 PTIGLDPQTRAHVWEYIeKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
548-756 |
1.54e-63 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 219.18 E-value: 1.54e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHL 627
Cdd:TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 628 YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL 707
Cdd:TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 708 QRQK-SDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGA 756
Cdd:TIGR01188 168 RALKeEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1381-1592 |
1.06e-61 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 208.41 E-value: 1.06e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:cd03230 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLvmyarlrgiperhigacventlrglllephanklvrTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03230 78 LPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
530-755 |
1.38e-61 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 210.87 E-value: 1.38e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:COG4555 2 IEVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:COG4555 78 VLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQK-SDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYG 755
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKkEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1381-1606 |
1.49e-59 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 205.09 E-value: 1.49e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:COG4555 2 IEVENLSKKYGKVP---ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFG 1606
Cdd:COG4555 159 PTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
530-745 |
2.63e-55 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 191.64 E-value: 2.63e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGqITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03264 1 LQLENLTKRYG----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
530-741 |
3.23e-52 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 183.34 E-value: 3.23e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALgKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
530-839 |
4.11e-51 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 183.00 E-value: 4.11e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqIRKSLG 609
Cdd:COG4152 2 LELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPE---DRRRIG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:COG4152 75 YLPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQK-SDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAG-YHMTLvkeph 767
Cdd:COG4152 155 EPFSGLDPVNVELLKDVIRELAaKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNtLRLEA----- 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 768 cnPEDISQLvhHHVPNATLESSAGAELSFILPRESTHrfEGLFAKLEKKQkelGIASFGASITTMEEVFLRV 839
Cdd:COG4152 230 --DGDAGWL--RALPGVTVVEEDGDGAELKLEDGADA--QELLRALLARG---PVREFEEVRPSLNEIFIEV 292
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
528-739 |
9.64e-51 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 180.67 E-value: 9.64e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQdmvqIRKS 607
Cdd:COG1116 6 PALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTG----PGPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 LGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:COG1116 82 RGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1381-1689 |
3.93e-50 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 180.30 E-value: 3.93e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVgkvRQRIGY 1460
Cdd:COG4152 2 LELKGLTKRFGDKT---AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED---RRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGyslRAKVQSEGQ 1620
Cdd:COG4152 156 PFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRN---TLRLEADGD 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1621 QEALEEFKAFVDLTFPGSV----LEDEHQGMvhyhlpgrdlswakvfGILEKAKEKYGVDDYSVSQISLEQVF 1689
Cdd:COG4152 233 AGWLRALPGVTVVEEDGDGaelkLEDGADAQ----------------ELLRALLARGPVREFEEVRPSLNEIF 289
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
530-738 |
1.34e-49 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 175.74 E-value: 1.34e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQdmvqIRKSLG 609
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 690 EPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAK 738
Cdd:cd03293 157 EPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
530-746 |
1.78e-49 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 175.60 E-value: 1.78e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVgNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG1122 1 IELENLS--FSY-PGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKkNLRELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH--DILFdNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:COG1122 78 GLVFQNpdDQLF-APTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT 217
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
530-746 |
1.86e-49 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 176.34 E-value: 1.86e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-QDMVQIRKSL 608
Cdd:cd03295 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIReQDPVELRRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKwNSRSRF---LSGGMRRKLSIGIALIAGSKV 685
Cdd:cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA-EFADRYpheLSGGQQQRVGVARALAADPPL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:cd03295 157 LLMDEPFGALDPITRDQLQEEFKRlqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1380-1601 |
3.97e-49 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 177.69 E-value: 3.97e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1380 PLIIKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIG 1459
Cdd:PRK13537 7 PIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1540 EPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
531-740 |
7.45e-49 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 173.42 E-value: 7.45e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIRKSLG 609
Cdd:cd03225 1 ELKNLS--FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLkELRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQH--DILFdNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:cd03225 79 LVFQNpdDQFF-GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd03225 158 LDEPTAGLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1381-1591 |
1.64e-48 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 172.08 E-value: 1.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVgkvRQRIGY 1460
Cdd:cd03269 1 LEVENVTKRFGRVT---ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA---RNRIGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
450-849 |
2.64e-48 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 190.61 E-value: 2.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 450 GQVLGMLLLDSVLYGLVTWYMEavfpgqfgvpqpWYFFImpSYWCGKPRAVAGKEEEDSDPEkalrneyfeaEPEDLVAG 529
Cdd:TIGR01257 1876 GKNLVAMAVEGVVYFLLTLLIQ------------HHFFL--SRWIAEPAKEPIFDEDDDVAE----------ERQRIISG 1931
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 ------IKIKHLSKVFrvGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ 603
Cdd:TIGR01257 1932 gnktdiLRLNELTKVY--SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD 2009
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 IRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGS 683
Cdd:TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 684 KVLILDEPTSGMDAISRRAIWD-LLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTL 762
Cdd:TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNtIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTM 2169
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 763 -VKEPH------CNPedISQLVHHHVPNATLESSAGAELSFILPRESTHRfegLFAKLEKKQKELGIASFGASITTMEEV 835
Cdd:TIGR01257 2170 kIKSPKddllpdLNP--VEQFFQGNFPGSVQRERHYNMLQFQVSSSSLAR---IFQLLISHKDSLLIEEYSVTQTTLDQV 2244
|
410
....*....|....
gi 116734710 836 FLRVGKLVDSSMDI 849
Cdd:TIGR01257 2245 FVNFAKQQTETYDL 2258
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1381-1590 |
6.79e-48 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 170.63 E-value: 6.79e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYE-QRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIG 1459
Cdd:cd03266 2 ITADALTKRFRdVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1540 EPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
530-733 |
8.14e-47 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 167.27 E-value: 8.14e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:COG4133 3 LEAENLSCRRG----ERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQkcPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGLRAD--REAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHfmDEADLLGDRI 733
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAHLARgGAVLLTTH--QPLELAAARV 199
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1369-1601 |
8.90e-47 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 171.94 E-value: 8.90e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1369 LAPSPDSLLHTPLIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS 1448
Cdd:PRK13536 30 KASIPGSMSTVAIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1449 SDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIA 1528
Cdd:PRK13536 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1529 LIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
530-745 |
1.70e-46 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 166.54 E-value: 1.70e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQiRKSLG 609
Cdd:cd03259 1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE-RRNIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 690 EPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:cd03259 156 EPLSALDAKLREELREELKElqRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1381-1593 |
7.21e-46 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 164.67 E-value: 7.21e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGeCFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:cd03264 1 LQLENLTKRYGKKR---ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1541 PSTGMDPVAR---RLLWDTVArareSGKAIIITSHSMEECEALCTRLAIMVQGQFK 1593
Cdd:cd03264 157 PTAGLDPEERirfRNLLSELG----EDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
530-741 |
7.43e-46 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 165.45 E-value: 7.43e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLlsgkELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKV 685
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDinRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
530-740 |
6.68e-45 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 162.06 E-value: 6.68e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqIRKSLG 609
Cdd:cd03269 1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---ARNRIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARAgKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1383-1591 |
3.84e-44 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 159.69 E-value: 3.84e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhRISSDVGKVRQRIGYCP 1462
Cdd:cd03268 3 TNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-KSYQKNIEALRRIGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 QFDALLDHMTGREMLVMYARLRGIPERHIgacvENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPS 1542
Cdd:cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRI----DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 1543 TGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
530-741 |
2.02e-43 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 157.38 E-value: 2.02e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIsQDMVQIRKSLG 609
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEALRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRqkcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRK----KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 690 EPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03268 152 EPTNGLDPDGIKELRELILSlRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
549-693 |
2.88e-43 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 154.73 E-value: 2.88e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQI-RKSLGLCPQHDILFDNLTVAEHL 627
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSlRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 628 YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF----LSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
527-739 |
2.43e-42 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 158.04 E-value: 2.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 527 VAGIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRK 606
Cdd:PRK13537 5 VAPIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 687 ILDEPTSGMDAISRRAIWD----LLQRQKsdrTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK13537 161 VLDEPTTGLDPQARHLMWErlrsLLARGK---TILLTTHFMEEAERLCDRLCVIEEG 214
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
530-746 |
1.22e-41 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 153.60 E-value: 1.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG1127 6 IEVRNLTKSF--G--DRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGlsekELYELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFY-AQLKGLSRQKCPEEVKQMLHIIGLEDkwnSRSRF---LSGGMRRKLSIGIALIA 681
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFPlREHTDLSEAEIRELVLEKLELVGLPG---AADKMpseLSGGMRKRVALARALAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 682 GSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG1127 159 DPEILLYDEPTAGLDPITSAVIDELIRelRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
531-740 |
4.56e-41 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 148.93 E-value: 4.56e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLG 609
Cdd:cd00267 1 EIENLSFRY----GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlPLEELRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQhdilfdnltvaehlyfyaqlkglsrqkcpeevkqmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd00267 77 YVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 690 EPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd00267 106 EPTSGLDPASRERLLELLRElAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
530-741 |
6.26e-41 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 150.72 E-value: 6.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKlsekELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 -KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEADlLGDRIAIMAKGEL 741
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAgtTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
530-745 |
9.73e-41 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 152.03 E-value: 9.73e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVF----------RVGNKDRA----------AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGR 589
Cdd:cd03294 1 IKIKGLYKIFgknpqkafklLAKGKSKEeilkktgqtvGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 590 AYISGYEISQ----DMVQIR-KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF 664
Cdd:cd03294 81 VLIDGQDIAAmsrkELRELRrKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 665 LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD-LLQRQ-KSDRTIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:cd03294 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDeLLRLQaELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
...
gi 116734710 743 CCG 745
Cdd:cd03294 241 QVG 243
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1381-1572 |
2.76e-40 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 148.40 E-value: 2.76e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGY 1460
Cdd:COG4133 3 LEAENLSCRRGER-LLF--SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGacVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYGLRADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190
....*....|....*....|....*....|..
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
530-741 |
1.03e-39 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 155.83 E-value: 1.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDR-AAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS----QDMVQI 604
Cdd:COG1123 261 LEVRNLSKRYPVRGKGGvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 605 RKSLGLCPQH--DILFDNLTVAEHLYF-YAQLKGLSRQKCPEEVKQMLHIIGLEDKwnSRSRF---LSGGMRRKLSIGIA 678
Cdd:COG1123 341 RRRVQMVFQDpySSLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPPD--LADRYpheLSGGQRQRVAIARA 418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 679 LIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG1123 419 LALEPKLLILDEPTSALDVSVQAQILNLLRdlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRI 483
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
528-746 |
5.82e-39 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 149.48 E-value: 5.82e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQI--- 604
Cdd:COG3842 4 PALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLppe 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 605 RKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG3842 76 KRNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG3842 156 VLLLDEPLSALDAKLREEMREELRRlqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGT 219
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
530-741 |
6.53e-39 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 145.34 E-value: 6.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMVQIR- 605
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlklSRRLRKIRr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDN--LTVAEHLY--FYAQLKGLSRQKCPEEVKQMLHIIGLEDKW-NSRSRFLSGGMRRKLSIGIALI 680
Cdd:cd03257 82 KEIQMVFQDPMSSLNprMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKklQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
530-741 |
7.07e-39 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 149.07 E-value: 7.07e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTAlserELRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKV 685
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG1135 162 LLCDEATSALDPETTRSILDLLKDinRELGLTIVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
530-746 |
1.39e-38 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 144.57 E-value: 1.39e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:cd03261 1 IELRGLTKSFG----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGlseaELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFYAQLKG-LSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTrLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSlkKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
530-740 |
1.47e-38 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 142.14 E-value: 1.47e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:cd03228 1 IEFKNVS--FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFdNLTVAEHLyfyaqlkglsrqkcpeevkqmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVLIL 688
Cdd:cd03228 79 AYVPQDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 689 DEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADlLGDRIAIMAKGE 740
Cdd:cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1383-1591 |
1.91e-38 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 143.38 E-value: 1.91e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLlAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYC 1461
Cdd:cd03225 2 LKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKlSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQF--DALLDHMTGREmlVMYA-RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:cd03225 81 FQNpdDQFFGPTVEEE--VAFGlENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1539 DEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
530-747 |
2.06e-38 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 143.84 E-value: 2.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03218 1 LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LC--PQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:cd03218 77 IGylPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQRQKsDRTI--VLTTHFMDEADLLGDRIAIMAKGELQCCGSS 747
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILK-DRGIgvLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
530-742 |
2.36e-38 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 144.01 E-value: 2.36e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRA-----------------AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYI 592
Cdd:cd03267 1 IEVSNLSKSYRVYSKEPGligslkslfkrkyreveALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 593 SGYEISQDMVQIRKSLGLC-PQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRR 671
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGVVfGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 672 KLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
530-740 |
5.79e-38 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 140.79 E-value: 5.79e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMVQIRK 606
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFYaqlkglsrqkcpeevkqmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVL 686
Cdd:cd03229 77 RIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKslQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
530-741 |
6.20e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 142.32 E-value: 6.20e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFP-----PTSGRAYISG---YEISQDM 601
Cdd:cd03260 1 IELRDLNVYYG----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGkdiYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQHDILFDnLTVAEHLYFYAQLKGLSRQKCPEE-VKQMLHIIGLEDKWNSRS--RFLSGGMRRKLSIGIA 678
Cdd:cd03260 77 LELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDErVEEALRKAALWDEVKDRLhaLGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 679 LIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
530-806 |
6.41e-38 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 145.62 E-value: 6.41e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKD-----------------RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYI 592
Cdd:COG4586 2 IEVENLSKTYRVYEKEpglkgalkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 593 SGYEISQDMVQIRKSLGLC-PQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRR 671
Cdd:COG4586 82 LGYVPFKRRKEFARRIGVVfGQRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRM 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 672 KLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLF 749
Cdd:COG4586 162 RCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEE 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 750 LKQKYGAGYHMTLVKEPHCNPEDISQLVhhhvpnaTLESSAGAELSF-ILPRESTHRF 806
Cdd:COG4586 242 LKERFGPYKTIVLELAEPVPPLELPRGG-------EVIEREGNRVRLeVDPRESLAEV 292
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
530-739 |
6.76e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 146.13 E-value: 6.76e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:PRK13536 42 IDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 690 EPTSGMDAISRRAIWD----LLQRQKsdrTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK13536 198 EPTTGLDPHARHLIWErlrsLLARGK---TILLTTHFMEEAERLCDRLCVLEAG 248
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
530-741 |
7.70e-38 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 142.10 E-value: 7.70e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG1136 5 LELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSlserELARLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 -KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG1136 85 rRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHfmdEADLLG--DRIAIMAKGEL 741
Cdd:COG1136 165 LILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTH---DPELAAraDRVIRLRDGRI 222
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
530-741 |
1.00e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 141.11 E-value: 1.00e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRaaVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG4619 1 LELEGLS--FRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNlTVAEHLYFYAQLKGLSRQkcPEEVKQMLHIIGLED---KWNSRSrfLSGGMRRKLSIGIALIAGSKV 685
Cdd:COG4619 77 AYVPQEPALWGG-TVRDNLPFPFQLRERKFD--RERALELLERLGLPPdilDKPVER--LSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
548-741 |
1.34e-37 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 141.81 E-value: 1.34e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCP--QHDILFDNLTVAE 625
Cdd:cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRtfQIPRLFPELTVLE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 ----------HLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:cd03219 95 nvmvaaqartGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 116734710 696 DAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03219 175 NPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
530-746 |
4.46e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 148.13 E-value: 4.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPT---SGRAYISGYEISQDMVQIR- 605
Cdd:COG1123 5 LEVRDLSVRYPGG--DVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG1123 83 RRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG1123 163 LLIADEPTTALDVTTQAEILDLLRelQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
530-742 |
9.54e-37 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 138.54 E-value: 9.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqDMVQIRKSLG 609
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT-DLPPKDRDIA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 690 EPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:cd03301 156 EPLSNLDAKLRVQMRAELKRlqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
528-746 |
1.01e-36 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 142.90 E-value: 1.01e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKs 607
Cdd:COG3839 2 ASLELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRN- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 LGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:COG3839 77 IAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 688 LDEPTSGMDAISR---RA-IWDLLQRQKSdrTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG3839 157 LDEPLSNLDAKLRvemRAeIKRLHRRLGT--TTIYVTHDQVEAMTLADRIAVMNDGRIQQVGT 217
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
498-760 |
1.35e-36 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 147.61 E-value: 1.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 498 RAVAGKEEEDSDPEkalrneyfEAEPEDLVAGIKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLS 577
Cdd:COG4987 310 NELLDAPPAVTEPA--------EPAPAPGGPSLELEDVS--FRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLA 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 578 MLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILF-----DNLTVAehlyfyaqlkglsrqkCP----EEVKQ 647
Cdd:COG4987 380 LLLRFLDPQSGSITLGGVDLRDlDEDDLRRRIAVVPQRPHLFdttlrENLRLA----------------RPdatdEELWA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 648 MLHIIGLED-------KWNSR----SRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTI 716
Cdd:COG4987 444 ALERVGLGDwlaalpdGLDTWlgegGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTV 523
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 116734710 717 VLTTHFMDEADlLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Cdd:COG4987 524 LLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELLAQNGRYRQL 566
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1381-1591 |
1.81e-36 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 137.65 E-value: 1.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsDVGKVRQRIGY 1460
Cdd:cd03259 1 LELKGLSKTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT-GVPPERRNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1541 PSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03259 157 PLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1381-1599 |
2.42e-36 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 137.85 E-value: 2.42e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVGKVRQRIG 1459
Cdd:COG1122 1 IELENLSFSYPGGTPAL--DDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQF-DALLDHMTGREMlVMYA-RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLStgIA--LIGEPAV 1535
Cdd:COG1122 79 LVFQNpDDQLFAPTVEED-VAFGpENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVA--IAgvLAMEPEV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1536 IFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
530-741 |
2.43e-36 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 138.78 E-value: 2.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRrRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH--DILFDNLTVAEHLYFYAQLKGLSRQKcpEEVKQMLHIIGLEDKWnsRSRF---LSGGMRRKLSIGIALIAGS 683
Cdd:COG1124 82 QMVFQDpyASLHPRHTVDRILAEPLRIHGLPDRE--ERIAELLEQVGLPPSF--LDRYphqLSGGQRQRVAIARALILEP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 684 KVLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG1124 158 ELLLLDEPTSALDVSVQAEILNLLKDLREERglTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
530-746 |
3.34e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 138.97 E-value: 3.34e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIRKSL 608
Cdd:PRK13632 8 IKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLkEIRKKI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:PRK13632 86 GIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEAdLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13632 166 FDESTSMLDPKGKREIKKIMVdlRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
543-745 |
4.11e-36 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 137.02 E-value: 4.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 543 NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP---TSGRAYISGYEISQDmvQIRKSLGLCPQHDILFD 619
Cdd:cd03234 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRKPD--QFQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 620 NLTVAEHLYFYAQLKglSRQKCPEEVKQM------LHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:cd03234 95 GLTVRETLTYTAILR--LPRKSSDAIRKKrvedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 694 GMDAISRRAIWDLLQR-QKSDRTIVLTTHfMDEADL--LGDRIAIMAKGELQCCG 745
Cdd:cd03234 173 GLDSFTALNLVSTLSQlARRNRIVILTIH-QPRSDLfrLFDRILLLSSGEIVYSG 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
531-746 |
5.16e-36 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 137.86 E-value: 5.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSKVFRvGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqdmvqirkslGL 610
Cdd:COG0411 6 EVRGLTKRFG-GLV---AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT----------GL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 611 cPQHDI-------------LFDNLTVAEHL----------YFYAQLKGLSRQKCPE-----EVKQMLHIIGLEDKWNSRS 662
Cdd:COG0411 72 -PPHRIarlgiartfqnprLFPELTVLENVlvaaharlgrGLLAALLRLPRARREEreareRAEELLERVGLADRADEPA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 663 RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:COG0411 151 GNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRrlRDERGITILLIEHDMDLVMGLADRIVVLDFGR 230
|
....*.
gi 116734710 741 LQCCGS 746
Cdd:COG0411 231 VIAEGT 236
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
519-756 |
6.43e-36 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 148.73 E-value: 6.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 519 FEAEPEDLVAgIKIKHLSKVFrvGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI- 597
Cdd:NF033858 257 RPADDDDEPA-IEARGLTMRF--G--DFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVd 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 598 SQDMvQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGI 677
Cdd:NF033858 332 AGDI-ATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAV 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQ---RQksDR-TIVLTTHFMDEAdLLGDRIAIMAKGELQCCGSSLFLKQK 753
Cdd:NF033858 411 AVIHKPELLILDEPTSGVDPVARDMFWRLLIelsRE--DGvTIFISTHFMNEA-ERCDRISLMHAGRVLASDTPAALVAA 487
|
...
gi 116734710 754 YGA 756
Cdd:NF033858 488 RGA 490
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1383-1591 |
1.09e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 133.52 E-value: 1.09e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYC 1461
Cdd:cd00267 2 IENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFdalldhmtgremlvmyarlrgiperhigacventlrglllephanklvrtySGGNKRKLSTGIALIGEPAVIFLDEP 1541
Cdd:cd00267 79 PQL---------------------------------------------------SGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 1542 STGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
530-746 |
1.32e-35 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 136.71 E-value: 1.32e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG1120 2 LEAENLS--VGYG--GRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAE--------HLYFYAQLKGLSRQKcpeeVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALI 680
Cdd:COG1120 78 AYVPQEPPAPFGLTVRElvalgrypHLGLFGRPSAEDREA----VEEALERTGLEHLADRPVDELSGGERQRVLIARALA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG1120 154 QEPPLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
528-739 |
1.49e-35 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 136.92 E-value: 1.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQiRks 607
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGAD-R-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 lGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:COG4525 79 -GVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:COG4525 158 MDEPFGALDALTREQMQELLLDvwQRTGKGVFLITHSVEEALFLATRLVVMSPG 211
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
530-746 |
2.98e-35 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 135.06 E-value: 2.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQI---RK 606
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG----KDITNLpphKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 687 ILDEPTSGMDAISRRAI-WDLLQRQKS-DRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:cd03300 153 LLDEPLGALDLKLRKDMqLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
528-747 |
8.39e-35 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 134.00 E-value: 8.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQD-MVQ-IR 605
Cdd:COG1137 2 MTLEAENLVKSY----GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpMHKrAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKV 685
Cdd:COG1137 78 LGIGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 686 LILDEPTSGMDAIS----RRAIWDLLQRQKSdrtIVLTTHFMDEAdlLG--DRIAIMAKGELQCCGSS 747
Cdd:COG1137 158 ILLDEPFAGVDPIAvadiQKIIRHLKERGIG---VLITDHNVRET--LGicDRAYIISEGKVLAEGTP 220
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
530-746 |
1.65e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 134.79 E-value: 1.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ---IR 605
Cdd:PRK13637 3 IKIENLTHIYMEGTPfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLC---PQHDiLFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLE-DKWNSRSRF-LSGGMRRKLSIGIALI 680
Cdd:PRK13637 83 KKVGLVfqyPEYQ-LFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyEDYKDKSPFeLSGGQKRRVAIAGVVA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKelHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
522-741 |
1.86e-34 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 142.67 E-value: 1.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 522 EPEDLVAGIKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-D 600
Cdd:COG2274 466 SLPRLKGDIELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIRKSLGLCPQHDILF-----DNLTVA------EHLYFYAQLKGLSrqkcpEEVKQMLHiiGLEDKWNSRSRFLSGGM 669
Cdd:COG2274 544 PASLRRQIGVVLQDVFLFsgtirENITLGdpdatdEEIIEAARLAGLH-----DFIEALPM--GYDTVVGEGGSNLSGGQ 616
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 670 RRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH---FMDEAdllgDRIAIMAKGEL 741
Cdd:COG2274 617 RQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLDKGRI 687
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
548-740 |
2.71e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 131.79 E-value: 2.71e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI----SQDMVqiRKSLGLCPQHDILFDNLTV 623
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDItglpPHERA--RAGIGYVPEGRRIFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYFYAQLKGLSRQK-CPEEVKQMLHIigLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRA 702
Cdd:cd03224 93 EENLLLGAYARRRAKRKaRLERVYELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 703 IWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd03224 171 IFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
530-746 |
4.72e-34 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 131.75 E-value: 4.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvfrVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqiRKSLG 609
Cdd:COG1121 7 IELENLT----VSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHdILFDN---LTVAE----HLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAG 682
Cdd:COG1121 79 YVPQR-AEVDWdfpITVRDvvlmGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 683 SKVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGeLQCCGS 746
Cdd:COG1121 158 PDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGP 221
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1381-1601 |
7.82e-34 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 130.74 E-value: 7.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQR--I 1458
Cdd:cd03218 1 LRAENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARlgI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1539 DEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1338-1632 |
8.93e-34 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 141.80 E-value: 8.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1338 ALRRR---RTLTELYTRMpvLPEDQDvADERTRILAPSPDSLLHTPLII-KELSKVYEQRVpllAVDRLSLAVQKGECFG 1413
Cdd:NF033858 223 ELLARtgaDTLEAAFIAL--LPEEKR-RGHQPVVIPPRPADDDDEPAIEaRGLTMRFGDFT---AVDHVSFRIRRGEIFG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1414 LLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGA 1493
Cdd:NF033858 297 FLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPAAEIAA 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1494 CVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSH 1572
Cdd:NF033858 377 RVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIElSREDGVTIFISTH 456
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1573 SMEECEaLCTRLAIMVQGQFKCLGSPQHLKSKFGSgyslrakvqsegqqEALEEfkAFVD 1632
Cdd:NF033858 457 FMNEAE-RCDRISLMHAGRVLASDTPAALVAARGA--------------ATLEE--AFIA 499
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
530-746 |
9.38e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 132.45 E-value: 9.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-----QDMVQ 603
Cdd:PRK13634 3 ITFQKVEHRYQYKTPfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 IRKSLGLC---PQHDiLFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIAL 679
Cdd:PRK13634 83 LRKKVGIVfqfPEHQ-LFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFeLSGGQMRRVAIAGVL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDL---LQRQKsDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMfykLHKEK-GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
530-740 |
1.16e-33 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 130.77 E-value: 1.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKlkgkALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEH-----LYFYAQLKGLSRQKCPEEVKQMLHI---IGLEDKWNSRSRFLSGGMRRKLSIGI 677
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLENvlsgrLGRRSTWRSLFGLFPKEEKQRALAAlerVGLLDKAYQRADQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
540-741 |
1.21e-33 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 128.82 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 540 RVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGL--FPPTSGRAYISGyeISQDMVQIRKSLGLCPQHDIL 617
Cdd:cd03213 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLING--RPLDKRSFRKIIGYVPQDDIL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 FDNLTVAEHLYFYAQLKGLSrqkcpeevkqmlhiigledkwnsrsrflsGGMRRKLSIGIALIAGSKVLILDEPTSGMDA 697
Cdd:cd03213 94 HPTLTVRETLMFAAKLRGLS-----------------------------GGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 698 ISRRAIWDLLQRQKSD-RTIVLTTH---------FmdeadllgDRIAIMAKGEL 741
Cdd:cd03213 145 SSALQVMSLLRRLADTgRTIICSIHqpsseifelF--------DKLLLLSQGRV 190
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1379-1600 |
2.82e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 129.82 E-value: 2.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHrissDVGKVRQR 1457
Cdd:COG1121 4 MPAIeLENLTVSYGGRP---VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGK----PPRRARRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDH--MTGREMLVM--YARLR--GIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIG 1531
Cdd:COG1121 77 IGYVPQRAEVDWDfpITVRDVVLMgrYGRRGlfRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFkCLGSPQH 1600
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLV-AHGPPEE 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
538-741 |
6.31e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 127.71 E-value: 6.31e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 538 VFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDI 616
Cdd:cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQDVT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 LF-----DNLTVA------EHLYFYAQLKGLSrqkcpEEVKQmlHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKV 685
Cdd:cd03245 89 LFygtlrDNITLGapladdERILRAAELAGVT-----DFVNK--HPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLgDRIAIMAKGEL 741
Cdd:cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV-DRIIVMDSGRI 216
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1383-1601 |
8.72e-33 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 128.19 E-value: 8.72e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYC 1461
Cdd:cd03295 3 FENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPH--ANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1540 EPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRlQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
530-742 |
9.76e-33 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 127.48 E-value: 9.76e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG2884 2 IRFENVSKRYP---GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQhDI-LFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG2884 79 RRIGVVFQ-DFrLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHfmDEA--DLLGDRIAIMAKGELQ 742
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEiNRRGTTVLIATH--DLElvDRMPKRVLELEDGRLV 216
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
529-746 |
1.32e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 128.71 E-value: 1.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 529 GIKIKHLSKVFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-----QDMV 602
Cdd:PRK13649 2 GINLQNVSYTYQAGTPfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKDIK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 603 QIRKSLGLCPQ--HDILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIAL 679
Cdd:PRK13649 82 QIRKKVGLVFQfpESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFeLSGGQMRRVAIAGIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1396-1600 |
1.52e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 127.17 E-value: 1.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1396 LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsdvGK-----VRQRIGYCPQFDALLDH 1470
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT---GLppheiARLGIGRTFQIPRLFPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MTGRE--MLVMYARLRGIP--------ERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03219 90 LTVLEnvMVAAQARTGSGLllararreEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQH 1600
Cdd:cd03219 170 PAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1381-1601 |
2.25e-32 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 126.68 E-value: 2.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQR--I 1458
Cdd:COG1137 4 LEAENLVKSYGKRT---VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARlgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:COG1137 81 GYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1539 DEPSTGMDPVA----RRLlwdtVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:COG1137 161 DEPFAGVDPIAvadiQKI----IRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
530-741 |
6.53e-32 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 128.77 E-value: 6.53e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAlsekELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHdilFdNL----TVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIA 681
Cdd:PRK11153 82 RQIGMIFQH---F-NLlssrTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 682 GSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDinRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
530-741 |
1.08e-31 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 124.18 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMVQIRK 606
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFyAQLK--GLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:cd03262 77 KVGMVFQQFNLFPHLTVLENITL-APIKvkGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
549-741 |
1.20e-31 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 124.76 E-value: 1.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqDMVQIRKSLGLCPQHDILFDNLTVAEHLY 628
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 629 FYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ 708
Cdd:cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
170 180 190
....*....|....*....|....*....|....*
gi 116734710 709 --RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03299 174 kiRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL 208
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
531-739 |
1.33e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 123.80 E-value: 1.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSkvFRVGNkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqiRKSLGL 610
Cdd:cd03235 1 EVEDLT--VSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKRIGY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 611 CPQH-DILFD-NLTVAE--HLYFYAQLKGLSRQKCP--EEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:cd03235 73 VPQRrSIDRDfPISVRDvvLMGLYGHKGLFRRLSKAdkAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREgMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
531-745 |
2.15e-31 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 121.77 E-value: 2.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSkvfrVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLG 609
Cdd:cd03214 1 EVENLS----VGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LcpqhdilfdnltvaehlyfyaqlkglsrqkcpeeVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03214 77 Y----------------------------------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 690 EPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:cd03214 123 EPTSHLDIAHQIELLELLRRlaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
529-739 |
2.19e-31 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 127.19 E-value: 2.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 529 GIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDM-VQIRKs 607
Cdd:COG1118 2 SIEVRNISKRF----GSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLpPRERR- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 LGLCPQHDILFDNLTVAEHLYFyaqlkGLSRQKCPEE-----VKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAG 682
Cdd:COG1118 77 VGFVFQHYALFPHMTVAENIAF-----GLRVRPPSKAeirarVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 683 SKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:COG1118 152 PEVLLLDEPFGALDAKVRKELRRWLRRlhDELGGTTVFVTHDQEEALELADRVVVMNQG 210
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1383-1602 |
2.43e-31 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 123.77 E-value: 2.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS----SDVGKVRQRI 1458
Cdd:cd03261 3 LRGLTKSFGGRTVL---KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGRE----MLVMYARLrgiPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:cd03261 80 GMLFQSGALFDSLTVFEnvafPLREHTRL---SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1602
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
532-741 |
4.84e-31 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 121.98 E-value: 4.84e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFRVGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVqiRKSLGLC 611
Cdd:cd03226 2 IENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER--RKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 PQH--DILFDNlTVAEHLYFYAQLKGLSRQKCpEEVKQMLHIIGLEDkWNSRSrfLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03226 77 MQDvdYQLFTD-SVREELLLGLKELDAGNEQA-ETVLKDLDLYALKE-RHPLS--LSGGQKQRLAIAAALLSGKDLLIFD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 690 EPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03226 152 EPTSGLDYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
548-740 |
5.62e-31 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 122.78 E-value: 5.62e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVqiRKSLGLCPQHDILFDNLTV 623
Cdd:COG0410 18 VLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGlpphRIA--RLGIGYVPEGRRIFPSLTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLY--FYAQLKGLSRQKCPEEVKQMLHIigLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:COG0410 96 EENLLlgAYARRDRAEVRADLERVYELFPR--LKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 702 AIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:COG0410 174 EIFEIIRRlNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1396-1599 |
6.24e-31 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 123.23 E-value: 6.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1396 LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsdvGK-----VRQRIGYCPQFDALLDH 1470
Cdd:COG0411 17 LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT---GLpphriARLGIARTFQNPRLFPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MTGRE--MLVMYARLRGIP-------------ERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAV 1535
Cdd:COG0411 94 LTVLEnvLVAAHARLGRGLlaallrlprarreEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1536 IFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:COG0411 174 LLLDEPAAGLNPEETEELAELIRRLRdERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPA 238
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1381-1596 |
1.00e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 121.21 E-value: 1.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIsSDVGKVRQRIGY 1460
Cdd:cd03301 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV-TDLPPKDRDIAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1541 PSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLG 1596
Cdd:cd03301 157 PLSNLDAKLRVQMRAELKRlQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1398-1590 |
1.32e-30 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 121.67 E-value: 1.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYC-PQFDALLDHMTGREM 1476
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVfGQKTQLWWDLPVIDS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556
Cdd:cd03267 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195
|
170 180 190
....*....|....*....|....*....|....*
gi 116734710 1557 VARA-RESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:cd03267 196 LKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
530-747 |
1.74e-30 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 121.61 E-value: 1.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:TIGR04406 2 LVAENLIKSY----KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 L--CPQHDILFDNLTVAEHLYFYAQL-KGLSRQKCPEEVKQML---HIIGLEDkwnSRSRFLSGGMRRKLSIGIALIAGS 683
Cdd:TIGR04406 78 IgyLPQEASIFRKLTVEENIMAVLEIrKDLDRAEREERLEALLeefQISHLRD---NKAMSLSGGERRRVEIARALATNP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 684 KVLILDEPTSGMDAIS----RRAIWDLLQRQKSdrtIVLTTHFMDEADLLGDRIAIMAKGELQCCGSS 747
Cdd:TIGR04406 155 KFILLDEPFAGVDPIAvgdiKKIIKHLKERGIG---VLITDHNVRETLDICDRAYIISDGKVLAEGTP 219
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1398-1688 |
3.30e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 123.27 E-value: 3.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsdvgkvRQRIGYCPQFDA-------LLDH 1470
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPF------KRRKEFARRIGVvfgqrsqLWWD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MTGREMLVMYARLRGIPE----RHIGACVEntlrgLL-LEPHANKLVrtysggnkRKLSTG--------IALIGEPAVIF 1537
Cdd:COG4586 111 LPAIDSFRLLKAIYRIPDaeykKRLDELVE-----LLdLGELLDTPV--------RQLSLGqrmrcelaAALLHRPKILF 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKvq 1616
Cdd:COG4586 178 LDEPTIGLDVVSKEAIREFLKEyNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKERFGPYKTIVLE-- 255
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1617 segqqeaLEEFKAFVDLTFPGSVLEDEhQGMVHYHLPGRDlswaKVFGILEKAKEKYGVDDYSVSQISLEQV 1688
Cdd:COG4586 256 -------LAEPVPPLELPRGGEVIERE-GNRVRLEVDPRE----SLAEVLARLLARYPVRDLTIEEPPIEEV 315
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1381-1591 |
4.28e-30 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 119.52 E-value: 4.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVY-EQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKV--- 1454
Cdd:cd03255 1 IELKNLSKTYgGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISklSEKELAafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 RQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEEcEALCTRLAIMVQGQ 1591
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRElNKEAGTTIVVVTHDPEL-AEYADRIIELRDGK 217
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1399-1543 |
6.51e-30 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 116.59 E-value: 6.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK-VRQRIGYCPQFDALLDHMTGREML 1477
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKsLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGIPERHIGACVENTLRGLLLEPHANKLVR----TYSGGNKRKLSTGIALIGEPAVIFLDEPST 1543
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
530-725 |
1.20e-29 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 119.42 E-value: 1.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkVFRvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSG-RAYISGYEISQ-DMVQIRKS 607
Cdd:COG1119 4 LELRNVT-VRR---GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGeDVWELRKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 LGLC-P--QHDILfDNLTVAEHLY--FYAQLkGLSRQKCPEE---VKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL 679
Cdd:COG1119 80 IGLVsPalQLRFP-RDETVLDVVLsgFFDSI-GLYREPTDEQrerARELLELLGLAHLADRPFGTLSQGEQRRVLIARAL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDE 725
Cdd:COG1119 158 VKDPELLILDEPTAGLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1381-1601 |
1.29e-29 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 118.92 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQR--I 1458
Cdd:TIGR04406 2 LVAENLIKSYKKR---KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARlgI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGREMLVMYARLRG-IPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:TIGR04406 79 GYLPQEASIFRKLTVEENIMAVLEIRKdLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:TIGR04406 159 LDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1381-1591 |
1.42e-29 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 116.52 E-value: 1.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI---SSDVGKVRQR 1457
Cdd:cd03229 1 LELKNVSKRYGQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDHMTGRemlvmyarlrgiperhigacvENTLRGLllephanklvrtySGGNKRKLSTGIALIGEPAVIF 1537
Cdd:cd03229 78 IGMVFQDFALFPHLTVL---------------------ENIALGL-------------SGGQQQRVALARALAMDPDVLL 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARE-SGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03229 124 LDEPTSALDPITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
530-746 |
1.70e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 125.64 E-value: 1.70e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRvGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG4988 337 IELEDVS--FS-YPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFdNLTVAEHLYFYAqlkglsRQKCPEEVKQMLH-------IIGLEDKWNS----RSRFLSGGMRRKLSIGI 677
Cdd:COG4988 414 AWVPQNPYLF-AGTIRENLRLGR------PDASDEELEAALEaagldefVAALPDGLDTplgeGGRGLSGGQAQRLALAR 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHfmDEADL-LGDRIAIMAKGELQCCGS 746
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITH--RLALLaQADRILVLDDGRIVEQGT 554
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1383-1599 |
1.92e-29 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 118.11 E-value: 1.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIsSDVGKVRQRIGYCP 1462
Cdd:cd03300 3 LENVSKFYGGFV---ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 QFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPS 1542
Cdd:cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1543 TGMDPVARR-LLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:cd03300 159 GALDLKLRKdMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
530-740 |
4.56e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 118.26 E-value: 4.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKD-RAAVRDLNLNLYEGQ-ITVLlGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--------- 598
Cdd:COG1101 2 LELKNLSKTFNPGTVNeKRALDGLNLTIEEGDfVTVI-GSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTklpeykrak 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 599 ------QDMvqirkSLGLCPqhdilfdNLTVAEHLYFyAQLKGLSR-------QKCPEEVKQMLHII--GLEDKWNSRSR 663
Cdd:COG1101 81 yigrvfQDP-----MMGTAP-------SMTIEENLAL-AYRRGKRRglrrgltKKRRELFRELLATLglGLENRLDTKVG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 664 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:COG1101 148 LLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKivEENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
529-746 |
4.76e-29 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 117.44 E-value: 4.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 529 GIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKsL 608
Cdd:cd03296 2 SIEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN-V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVK-------QMLHIIGLEDKWNSRsrfLSGGMRRKLSIGIALIA 681
Cdd:cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRakvhellKLVQLDWLADRYPAQ---LSGGQRQRVALARALAV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 682 GSKVLILDEPTSGMDAISRRAIWDLLqRQKSDR---TIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWL-RRLHDElhvTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
530-736 |
6.49e-29 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 119.39 E-value: 6.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP---TSGRAYISGYEISQ----DMV 602
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlsekELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 603 QIR-KSLGLCPQhdilfD-----N--LTVAEHLY-FYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF---LSGGMR 670
Cdd:COG0444 82 KIRgREIQMIFQ-----DpmtslNpvMTVGDQIAePLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYpheLSGGMR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 671 RKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHfmdeaDL-----LGDRIAIM 736
Cdd:COG0444 157 QRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELglAILFITH-----DLgvvaeIADRVAVM 224
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
530-741 |
7.20e-29 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 117.81 E-value: 7.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIRKSL 608
Cdd:PRK13635 6 IRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVwDVRRQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:PRK13635 84 GMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEAdLLGDRIAIMAKGEL 741
Cdd:PRK13635 164 LDEATSMLDPRGRREVLETVRQlkEQKGITVLSITHDLDEA-AQADRVIVMNKGEI 218
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1381-1599 |
8.03e-29 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 117.07 E-value: 8.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIG 1459
Cdd:COG1120 2 LEAENLSVGYGGRP---VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREmLVMYARLrgiPerHIG----------ACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIAL 1529
Cdd:COG1120 79 YVPQEPPAPFGLTVRE-LVALGRY---P--HLGlfgrpsaedrEAVEEALERTGLEHLADRPVDELSGGERQRVLIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:COG1120 153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
543-741 |
1.48e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 117.10 E-value: 1.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 543 NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQD---MVQIRKSLGLCPQH--DIL 617
Cdd:PRK13639 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDkksLLEVRKTVGIVFQNpdDQL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 FDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA 697
Cdd:PRK13639 92 FAP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 698 ISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK13639 171 MGASQIMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1383-1591 |
2.21e-28 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 114.91 E-value: 2.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVY-EQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV----RQR 1457
Cdd:cd03257 4 VKNLSVSFpTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLrkirRKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQ--FDALLDHMTGREML--VMYARLRGIPERHIGACVENTLRGLLLEP-HANKLVRTYSGGNKRKLSTGIALIGE 1532
Cdd:cd03257 84 IQMVFQdpMSSLNPRMTIGEQIaePLRIHGKLSKKEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARALALN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03257 164 PKLLIADEPTSALDVSVQAQILDLLKKLQeELGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1379-1602 |
4.88e-28 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 114.31 E-value: 4.88e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK---- 1453
Cdd:COG1127 3 EPMIeVRNLTKSFGDRVVL---DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelye 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1454 VRQRIGYCPQFDALLDHMTGRE--MLVMYaRLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLstGIA--L 1529
Cdd:COG1127 80 LRRRIGMLFQGGALFDSLTVFEnvAFPLR-EHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRV--ALAraL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1602
Cdd:COG1127 157 ALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1384-1572 |
6.84e-28 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 113.52 E-value: 6.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG---EESLTSGDAFVGGHRISSDvgKVRQRIGY 1460
Cdd:cd03234 8 DVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNGQPRKPD--QFQKCVAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMLVMYARLRG---IPERHIGACVENT-LRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVI 1536
Cdd:cd03234 86 VRQDDILLPGLTVRETLTYTAILRLprkSSDAIRKKRVEDVlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 1537 FLDEPSTGMDPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1381-1587 |
8.20e-28 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 112.95 E-value: 8.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQ-RVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSdvgkVRQRIG 1459
Cdd:cd03293 1 LEVRNVSKTYGGgGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 1540 EPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1359-1601 |
1.41e-27 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 119.24 E-value: 1.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1359 QDVADERTRILAPSPDSLLHTPLI-IKELSKVYEQRVP--LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESL 1435
Cdd:COG1123 238 AAVPRLGAARGRAAPAAAAAEPLLeVRNLSKRYPVRGKggVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRP 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1436 TSGDAFVGGHRIS----SDVGKVRQRIGYCPQ--FDALLDHMTGREMLVMYARLRGI-PERHIGACVENTLR--GLLLEp 1506
Cdd:COG1123 318 TSGSILFDGKDLTklsrRSLRELRRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLErvGLPPD- 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1507 HANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVAR----RLLWDtvaRARESGKAIIITSHSMEECEALCT 1582
Cdd:COG1123 397 LADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQaqilNLLRD---LQRELGLTYLFISHDLAVVRYIAD 473
|
250
....*....|....*....
gi 116734710 1583 RLAIMVQGQFKCLGSPQHL 1601
Cdd:COG1123 474 RVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
547-741 |
1.66e-27 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 112.12 E-value: 1.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 547 AAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS----QDMVQIRKSLGLCPQHDILFDNLT 622
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLRRKIGVVFQDFRLLPDRN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRA 702
Cdd:cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 703 IWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03292 175 IMNLLKKiNKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
549-739 |
1.66e-27 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 112.56 E-value: 1.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqirkslglCPQHDILFDN------LT 622
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP----------GPDRMVVFQNysllpwLT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYFY--AQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Cdd:TIGR01184 71 VRENIALAvdRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 701 RAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:TIGR01184 151 GNLQEELMQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
530-745 |
5.36e-27 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 110.70 E-value: 5.36e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNK------------------DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAY 591
Cdd:cd03220 1 IELENVSKSYPTYKGgssslkklgilgrkgevgEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 592 ISGyeisqdmvQIRKSLGLcpqhDILFD-NLTVAEHLYFYAQLKGLSRqkcpEEVKQMLHII----GLEDKWNSRSRFLS 666
Cdd:cd03220 81 VRG--------RVSSLLGL----GGGFNpELTGRENIYLNGRLLGLSR----KEIDEKIDEIiefsELGDFIDLPVKTYS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 667 GGMRRKLSIGIALIAGSKVLILDEPTSGMDA-ISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:cd03220 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAaFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
548-767 |
5.61e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 112.90 E-value: 5.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ-----IRKSLGLCPQ--HDILFDN 620
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQkeikpVRKKVGVVFQfpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 lTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAIS 699
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFeLSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 700 RRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCG--SSLFLKQKYGAGYHMTLVKEPH 767
Cdd:PRK13643 180 RIEMMQLFESiHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGtpSDVFQEVDFLKAHELGVPKATH 250
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
548-746 |
6.07e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 111.36 E-value: 6.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIsqdmvqirksLGLcPQHDI----------- 616
Cdd:COG4674 25 ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDL----------TGL-DEHEIarlgigrkfqk 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 --LFDNLTVAEHLY--------FYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:COG4674 94 ptVFEELTVFENLElalkgdrgVFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG4674 174 LLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
551-742 |
6.08e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 110.46 E-value: 6.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNL---YEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGY-----EISQDMVQIRKSLGLCPQHDILFDNLT 622
Cdd:cd03297 12 DFTLKIdfdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsRKKINLPPQQRKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYFyaQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRA 702
Cdd:cd03297 92 VRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 703 IWDLLQRQKSDRTI--VLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:cd03297 170 LLPELKQIKKNLNIpvIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1381-1601 |
6.33e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 114.40 E-value: 6.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsDVgKVRQR-IG 1459
Cdd:COG3839 4 LELENVSKSYGGVE---ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVT-DL-PPKDRnIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:COG3839 79 MVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1540 EPSTGMDPVARrllwdTVARA------RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:COG3839 159 EPLSNLDAKLR-----VEMRAeikrlhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1381-1601 |
7.71e-27 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 114.04 E-value: 7.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIsSDVgKVRQR-IG 1459
Cdd:COG3842 6 LELENVSKRYGDVT---ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDV-TGL-PPEKRnVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMlVMYA-RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNK------RklstgiALIGE 1532
Cdd:COG3842 81 MVFQDYALFPHLTVAEN-VAFGlRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQqrvalaR------ALAPE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:COG3842 154 PRVLLLDEPLSALDAKLREEMREELRRLqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
530-741 |
8.33e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 108.28 E-value: 8.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGnkdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqdmvqirkslG 609
Cdd:cd03216 1 LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS----------F 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHdilfdnltvaehlyfyAQLKGLSRqkcpeeVKQmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03216 67 ASPRD----------------ARRAGIAM------VYQ-----------------LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03216 108 EPTAALTPAEVERLFKVIRRLRAQgVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
530-746 |
8.96e-27 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 110.94 E-value: 8.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRA------------------AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAY 591
Cdd:COG1134 5 IEVENVSKSYRLYHEPSRslkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 592 ISGyEISqdmvqirkSL-----GLCPQhdilfdnLTVAEHLYFYAQLKGLSRqkcpEEVKQML-HII---GLEDKWNSRS 662
Cdd:COG1134 85 VNG-RVS--------ALlelgaGFHPE-------LTGRENIYLNGRLLGLSR----KEIDEKFdEIVefaELGDFIDQPV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 663 RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAI-SRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG1134 145 KTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAfQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
....*
gi 116734710 742 QCCGS 746
Cdd:COG1134 225 VMDGD 229
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
1402-1592 |
1.06e-26 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 109.52 E-value: 1.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALLDHMTGREMLVMY 1480
Cdd:COG4619 19 VSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAYVPQ-EPALWGGTVRDNLPFP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1481 ARLRGIPERhigacvENTLRGLL----LEPHA-NKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWD 1555
Cdd:COG4619 98 FQLRERKFD------RERALELLerlgLPPDIlDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEE 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 116734710 1556 TVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:COG4619 172 LLREyLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
530-741 |
1.13e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 111.84 E-value: 1.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI-----SQDMVQ 603
Cdd:PRK13641 3 IKFENVDYIYSPGTPmEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetgNKNLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 IRKSLGLCPQ--HDILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIALI 680
Cdd:PRK13641 83 LRKKVSLVFQfpEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFeLSGGQMRRVAIAGVMA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDL-LQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLfKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1379-1613 |
1.19e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 116.54 E-value: 1.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG---EESLTSGDAFVGGHRISSDVGKV 1454
Cdd:COG1123 2 TPLLeVRDLSVRYPGG-DVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 R-QRIGYCPQ-FDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGE 1532
Cdd:COG1123 81 RgRRIGMVFQdPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLkskFGSGYSL 1611
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRElQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI---LAAPQAL 237
|
..
gi 116734710 1612 RA 1613
Cdd:COG1123 238 AA 239
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
530-746 |
1.57e-26 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 113.50 E-value: 1.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQI---RK 606
Cdd:PRK09452 15 VELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG----QDITHVpaeNR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFyaqlkGLSRQKCPEE-----VKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIA 681
Cdd:PRK09452 87 HVNTVFQSYALFPHMTVFENVAF-----GLRMQKTPAAeitprVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 682 GSKVLILDEPTSGMDAISRRAIW-DL--LQRQKSdRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK09452 162 KPKVLLLDESLSALDYKLRKQMQnELkaLQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
530-746 |
2.38e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 110.66 E-value: 2.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTS---GRAYISGYEISQDMV-QIR 605
Cdd:PRK13640 6 VEFKHVS--FTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVwDIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK13640 84 EKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEADlLGDRIAIMAKGELQCCGS 746
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNnlTVISITHDIDEAN-MADQVLVLDDGKLLAQGS 226
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
530-762 |
4.28e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 110.25 E-value: 4.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMV--Q 603
Cdd:PRK13646 3 IRFDNVSYTYQKGTPyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIthkTKDKYirP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 IRKSLGLCPQ--HDILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIALI 680
Cdd:PRK13646 83 VRKRIGMVFQfpESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFqMSGGQMRKIAIVSILA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL--QCCGSSLFLKQKYGA 756
Cdd:PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSlqTDENKTIILVSHDMNEVARYADEVIVMKEGSIvsQTSPKELFKDKKKLA 241
|
....*.
gi 116734710 757 GYHMTL 762
Cdd:PRK13646 242 DWHIGL 247
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1402-1603 |
4.37e-26 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 108.29 E-value: 4.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRIGYCPQFDALLDHMTGREMLVM 1479
Cdd:cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITglPPHERARAGIGYVPEGRRIFPELTVEENLLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1480 YARLRGIPERHIgacvenTLRGLL-----LEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLW 1554
Cdd:cd03224 99 GAYARRRAKRKA------RLERVYelfprLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 1555 DTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1603
Cdd:cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1383-1587 |
6.03e-26 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 107.62 E-value: 6.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrisSDVGKVRQRIGYCP 1462
Cdd:cd03235 2 VEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG----KPLEKERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 QFdALLDH---MTGREMLVMYARLRGIPERHIG----ACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAV 1535
Cdd:cd03235 75 QR-RSIDRdfpISVRDVVLMGLYGHKGLFRRLSkadkAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1536 IFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1387-1575 |
8.00e-26 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 107.45 E-value: 8.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1387 SKVYEQRVPllAVDRLSLAVQKGE-CFgLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS----SDVGKVRQRIGYC 1461
Cdd:COG2884 8 SKRYPGGRE--ALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSrlkrREIPYLRRRIGVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQfDA-LLDHMTGRE--MLVMyaRLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKlsTGI--ALIGEPAVI 1536
Cdd:COG2884 85 FQ-DFrLLPDRTVYEnvALPL--RVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQR--VAIarALVNRPELL 159
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 1537 FLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSME 1575
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLE 198
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1383-1601 |
8.02e-26 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 107.67 E-value: 8.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLL-AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS----SDVGKVRQR 1457
Cdd:cd03258 4 LKNVSKVFGDTGGKVtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDHMTGREMlVMYA-RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVI 1536
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFEN-VALPlEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1537 FLDEPSTGMDPVARR----LLWDTvarARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:cd03258 163 LCDEATSALDPETTQsilaLLRDI---NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
530-736 |
9.23e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 113.57 E-value: 9.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:COG1129 5 LEMRGISKSFG-GVK---ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 --LCPQHDILFDNLTVAEHLYFYAQLKG---LSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG1129 81 iaIIHQELNLVPNLSVAENIFLGREPRRgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDAR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 685 VLILDEPTSgmdAISRRAI---WDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIM 736
Cdd:COG1129 161 VLILDEPTA---SLTEREVerlFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVL 213
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
548-746 |
1.22e-25 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 111.66 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR-KSLGLCPQHDILFDNLT 622
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKisdaELREVRrKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRA 702
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 703 IWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK10070 203 MQDELVKlqAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1381-1601 |
1.27e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 107.29 E-value: 1.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRI 1458
Cdd:PRK10895 4 LTAKNLAKAYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGRE--MLVMYARLRGIPERHIGACVEntlrgLLLEPHA----NKLVRTYSGGNKRKLSTGIALIGE 1532
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDnlMAVLQIRDDLSAEQREDRANE-----LMEEFHIehlrDSMGQSLSGGERRRVEIARALAAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
530-742 |
1.46e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 108.28 E-value: 1.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVG-NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIRKS 607
Cdd:PRK13650 5 IEVKNLT--FKYKeDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVwDIRHK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 LGLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK13650 83 IGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 687 ILDEPTSGMDAISRRaiwDLLQ-----RQKSDRTIVLTTHFMDEAdLLGDRIAIMAKGELQ 742
Cdd:PRK13650 163 ILDEATSMLDPEGRL---ELIKtikgiRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE 219
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
530-740 |
1.73e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 110.70 E-value: 1.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQdMVQIRKSLG 609
Cdd:PRK11607 20 LEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH-VPPYQRPIN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 690 EPTSGMDAISRR----AIWDLLQRQKSdrTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK11607 175 EPMGALDKKLRDrmqlEVVDILERVGV--TCVMVTHDQEEAMTMAGRIAIMNRGK 227
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1379-1591 |
1.99e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 107.09 E-value: 1.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSG-DAFVGGHRI-SSDVGKVR 1455
Cdd:COG1119 1 DPLLeLRNVTVRRGGKTIL---DDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 QRIGYC-PQF-DALLDHMTGREMLV--MYARLrGIPeRHIGACVENTLRGLL----LEPHANKLVRTYSGGNKRKLSTGI 1527
Cdd:COG1119 78 KRIGLVsPALqLRFPRDETVLDVVLsgFFDSI-GLY-REPTDEQRERARELLellgLAHLADRPFGTLSQGEQRRVLIAR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1528 ALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG1119 156 ALVKDPELLILDEPTAGLDLGARELLLALLDKlAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1399-1591 |
2.26e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 105.33 E-value: 2.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG--EESLTSGDAFVGGHRISSDvgKVRQRIGYCPQFDALLDHMTGREM 1476
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLDKR--SFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLRGIperhigacventlrglllephanklvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556
Cdd:cd03213 103 LMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 1557 VARARESGKAIIITSHS-MEECEALCTRLAIMVQGQ 1591
Cdd:cd03213 154 LRRLADTGRTIICSIHQpSSEIFELFDKLLLLSQGR 189
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
530-739 |
3.09e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 107.13 E-value: 3.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ-IRKSL 608
Cdd:PRK13647 5 IEVEDLHFRYKDGTK---ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQ--HDILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK13647 82 GLVFQdpDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK13647 161 VLDEPMAYLDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1381-1610 |
3.72e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 106.43 E-value: 3.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQ---RVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV-RQ 1456
Cdd:COG1124 2 LEVRNLSVSYGQggrRVP--VLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAfRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQ--FDALLDHMTGREMLVMYARLRGIPERhiGACVENTLRGLLLEPH-ANKLVRTYSGGNKRKLSTGIALIGEP 1533
Cdd:COG1124 80 RVQMVFQdpYASLHPRHTVDRILAEPLRIHGLPDR--EERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALILEP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYS 1610
Cdd:COG1124 158 ELLLLDEPTSALDVSVQAEILNLLKDLReERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPYT 235
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
527-746 |
6.17e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 105.36 E-value: 6.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 527 VAGIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--QDMVQI 604
Cdd:PRK10895 1 MATLTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 605 RKSLGLCPQHDILFDNLTVAEHLYFYAQL-KGLS---RQKCPEEVKQMLHIIGLEDkwnSRSRFLSGGMRRKLSIGIALI 680
Cdd:PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIrDDLSaeqREDRANELMEEFHIEHLRD---SMGQSLSGGERRRVEIARALA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1381-1587 |
6.32e-25 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 105.94 E-value: 6.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRV-PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsdvgKVRQRIG 1459
Cdd:COG1116 8 LELRGVSKRFPTGGgGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT----GPGPDRG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGRE--MLVMyaRLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKlsTGIA--LIGEPAV 1535
Cdd:COG1116 84 VVFQEPALLPWLTVLDnvALGL--ELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQR--VAIAraLANDPEV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1536 IFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:COG1116 160 LLMDEPFGALDALTRERLQDELLRlWQETGKTVLFVTHDVDEAVFLADRVVVL 212
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
545-736 |
6.88e-25 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 103.85 E-value: 6.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisqdmvqiRKSLGLCPQHDILFDNL--T 622
Cdd:NF040873 4 GRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----------GARVAYVPQRSEVPDSLplT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAE--------HLYFYAQLKGLSRQkcpeEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSG 694
Cdd:NF040873 74 VRDlvamgrwaRRGLWRRLTRDDRA----AVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116734710 695 MDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEAdLLGDRIAIM 736
Cdd:NF040873 150 LDAESRERIIALLAEEHARgATVVVVTHDLELV-RRADPCVLL 191
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
543-741 |
7.15e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 106.33 E-value: 7.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 543 NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--QDMVQIRKSLGLCPQHDilfDN 620
Cdd:PRK13633 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENLWDIRNKAGMVFQNP---DN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 LTVA----EHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PRK13633 97 QIVAtiveEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 116734710 697 AISRRAIWDLLQR--QKSDRTIVLTTHFMDEAdLLGDRIAIMAKGEL 741
Cdd:PRK13633 177 PSGRREVVNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSGKV 222
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
551-746 |
7.28e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 108.26 E-value: 7.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyEISQDMVQI------RKSLGLCPQHDILFDNLTVA 624
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG-EVLQDSARGiflpphRRRIGYVFQEARLFPHLSVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYF-YAQLKGLSRQKCPEEVKQMLhiiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAI 703
Cdd:COG4148 96 GNLLYgRKRAPRAERRISFDEVVELL---GIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEI 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 704 WDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG4148 173 LPYLERlrDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGP 217
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
539-746 |
1.14e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 104.49 E-value: 1.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 539 FRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDIL 617
Cdd:cd03252 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQENVL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 F-----DNLTVA------EHLYFYAQLKGLSR--QKCPEEVKQMLhiigledkwNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:cd03252 88 FnrsirDNIALAdpgmsmERVIEAAKLAGAHDfiSELPEGYDTIV---------GEQGAGLSGGQRQRIAIARALIHNPR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMdEADLLGDRIAIMAKGELQCCGS 746
Cdd:cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGS 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
530-767 |
3.08e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 104.54 E-value: 3.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMVQIRK 606
Cdd:PRK13636 6 LKVEELNYNYSDGTH---ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLC---PQHDiLFdNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGS 683
Cdd:PRK13636 83 SVGMVfqdPDNQ-LF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 684 KVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGE--LQCCGSSLFLKQKYGAGYH 759
Cdd:PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEmqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRviLQGNPKEVFAEKEMLRKVN 240
|
....*...
gi 116734710 760 MTLVKEPH 767
Cdd:PRK13636 241 LRLPRIGH 248
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
538-741 |
4.75e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 100.75 E-value: 4.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 538 VFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDI 616
Cdd:cd03246 7 SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 LFDNlTVAEHLyfyaqlkglsrqkcpeevkqmlhiigledkwnsrsrfLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:cd03246 87 LFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 697 AISRRAIWDLLQR-QKSDRTIVLTTHFMdEADLLGDRIAIMAKGEL 741
Cdd:cd03246 129 VEGERALNQAIAAlKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1383-1599 |
5.39e-24 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 102.80 E-value: 5.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDvgKVRQR-IGYC 1461
Cdd:cd03296 5 VRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV--PVQERnVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDHMTGREM----LVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:cd03296 80 FQHYALFRHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:cd03296 160 LDEPFGALDAKVRKELRRWLRRLHdELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
530-740 |
6.18e-24 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 102.31 E-value: 6.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:cd03251 1 VEFKNVT--FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNlTVAEHLYFYAqlkglsRQKCPEEVKQMLH-------IIGLEDKWNS----RSRFLSGGMRRKLSIGI 677
Cdd:cd03251 79 GLVSQDVFLFND-TVAENIAYGR------PGATREEVEEAARaanahefIMELPEGYDTvigeRGVKLSGGQRQRIAIAR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH----FMDeadllGDRIAIMAKGE 740
Cdd:cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHrlstIEN-----ADRIVVLEDGK 213
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
551-746 |
1.07e-23 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 104.81 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyEISQDMVQI------RKSLGLCPQHDILFDNLTVA 624
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGiflppeKRRIGYVFQEARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHL-YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKwnsRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAI 703
Cdd:TIGR02142 94 GNLrYGMKRARPSERRISFERVIELLGIGHLLGR---LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 704 WDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:TIGR02142 171 LPYLERlhAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
546-739 |
1.36e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 102.09 E-value: 1.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQirksLGLCPQHDILFDNLTVAE 625
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD 705
Cdd:PRK11248 90 NVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 706 LLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11248 170 LLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
543-721 |
1.39e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 101.15 E-value: 1.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 543 NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFdNL 621
Cdd:cd03254 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFLF-SG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEHLYfyaqlkgLSRQKCPEEV-------KQMLHII-----GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03254 92 TIMENIR-------LGRPNATDEEvieaakeAGAHDFImklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164
|
170 180 190
....*....|....*....|....*....|..
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:cd03254 165 EATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
546-741 |
1.81e-23 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 99.43 E-value: 1.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ--IRKSLGLCP---QHDILFDN 620
Cdd:cd03215 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRdaIRAGIAYVPedrKREGLVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 LTVAEHLyfyaqlkglsrqkcpeevkqmlhIIgledkwnsrSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Cdd:cd03215 93 LSVAENI-----------------------AL---------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 701 RAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:cd03215 141 AEIYRLIRELADAgKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1379-1648 |
1.96e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 104.53 E-value: 1.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIsSDVGKVRQR 1457
Cdd:PRK11607 17 TPLLeIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1538 LDEPSTGMDPVAR-RLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSlrakvq 1616
Cdd:PRK11607 173 LDEPMGALDKKLRdRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS------ 246
|
250 260 270
....*....|....*....|....*....|..
gi 116734710 1617 segqqealEEFKAFVDLtFPGSVLEDEHQGMV 1648
Cdd:PRK11607 247 --------AEFIGSVNV-FEGVLKERQEDGLV 269
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1379-1591 |
2.11e-23 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 100.50 E-value: 2.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVY---EQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----D 1450
Cdd:COG1136 2 SPLLeLRNLTKSYgtgEGEVT--ALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSlserE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1451 VGKVR-QRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIAL 1529
Cdd:COG1136 80 LARLRrRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1530 IGEPAVIFLDEPsTG-MDPVARRLLWDTVAR-ARESGKAIIITSHSmEECEALCTRLAIMVQGQ 1591
Cdd:COG1136 160 VNRPKLILADEP-TGnLDSKTGEEVLELLRElNRELGTTIVMVTHD-PELAARADRVIRLRDGR 221
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1380-1599 |
2.13e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.43 E-value: 2.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1380 PLI-IKELSKVY--EQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVgghRISSD------ 1450
Cdd:TIGR03269 278 PIIkVRNVSKRYisVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV---RVGDEwvdmtk 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1451 -----VGKVRQRIGYCPQFDALLDHMT---------GREMLVMYARLRGIPERHIGACVENTLRGLLlephaNKLVRTYS 1516
Cdd:TIGR03269 355 pgpdgRGRAKRYIGILHQEYDLYPHRTvldnlteaiGLELPDELARMKAVITLKMVGFDEEKAEEIL-----DKYPDELS 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1517 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQFKCL 1595
Cdd:TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509
|
....
gi 116734710 1596 GSPQ 1599
Cdd:TIGR03269 510 GDPE 513
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
545-747 |
3.16e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 100.89 E-value: 3.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFP------PTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDIL 617
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 FDNLTVAEHLYFYAQLKGLS-RQKCPEEVKQMLHIIGL----EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPT 692
Cdd:PRK14246 102 FPHLSIYDNIAYPLKSHGIKeKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 693 SGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSS 747
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
530-741 |
3.16e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 101.37 E-value: 3.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-QDMVQIRKSL 608
Cdd:PRK13648 8 IVFKNVS--FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITdDNFEKLRKHI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:PRK13648 86 GIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEAdLLGDRIAIMAKGEL 741
Cdd:PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTV 220
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
504-741 |
3.27e-23 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 106.40 E-value: 3.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 504 EEEDSDPEKALrneyfeaEPEDLVAGIKIKHLSkvFRvGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLF 583
Cdd:COG1132 321 PPEIPDPPGAV-------PLPPVRGEIEFENVS--FS-YPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFY 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 584 PPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFdNLTVAEHLyfyaqlkGLSRQKCP-EEVKQMLH-------IIGL 654
Cdd:COG1132 391 DPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLF-SGTIRENI-------RYGRPDATdEEVEEAAKaaqahefIEAL 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 655 EDKWNS----RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH------FMd 724
Cdd:COG1132 463 PDGYDTvvgeRGVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHrlstirNA- 541
|
250
....*....|....*..
gi 116734710 725 eadllgDRIAIMAKGEL 741
Cdd:COG1132 542 ------DRILVLDDGRI 552
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1383-1596 |
4.66e-23 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 97.89 E-value: 4.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR-QRIGYC 1461
Cdd:cd03214 2 VENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELaRKIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDhmtgremlvmyarlrgiperhigacventlrgllLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP 1541
Cdd:cd03214 79 PQALELLG----------------------------------LAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1542 STGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLG 1596
Cdd:cd03214 125 TSHLDIAHQIELLELLRRlARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
530-741 |
5.33e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 105.11 E-value: 5.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvGNKdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEisqdmVQIRKS-- 607
Cdd:COG3845 6 LELRGITKRF--GGV--VANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKP-----VRIRSPrd 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 -----LGLCPQHDILFDNLTVAEHLYFYA---QLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL 679
Cdd:COG3845 77 aialgIGMVHQHFMLVPNLTVAENIVLGLeptKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG3845 157 YRGARILILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
530-741 |
8.37e-23 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 105.18 E-value: 8.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ-IRKSL 608
Cdd:TIGR02203 331 VEFRNVT--FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAsLRRQV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNlTVAEHLYfYAQLKGLSRQKCpEEVKQMLHII--------GLEDKWNSRSRFLSGGMRRKLSIGIALI 680
Cdd:TIGR02203 409 ALVSQDVVLFND-TIANNIA-YGRTEQADRAEI-ERALAAAYAQdfvdklplGLDTPIGENGVLLSGGQRQRLAIARALL 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADlLGDRIAIMAKGEL 741
Cdd:TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRI 545
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1402-1591 |
8.61e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 98.90 E-value: 8.61e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----DVgkVRQRIGYCPQFDALLDHMTGREML 1477
Cdd:COG0410 22 VSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGlpphRI--ARLGIGYVPEGRRIFPSLTVEENL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGiPERHIGACVENTL----RgllLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLL 1553
Cdd:COG0410 100 LLGAYARR-DRAEVRADLERVYelfpR---LKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEI 175
|
170 180 190
....*....|....*....|....*....|....*...
gi 116734710 1554 WDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG0410 176 FEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
546-721 |
9.31e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 104.68 E-value: 9.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFDNlTVA 624
Cdd:TIGR02857 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRDQIAWVPQHPFLFAG-TIA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFY------AQLKGLSRQKCPEEVKQMLHIiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAI 698
Cdd:TIGR02857 414 ENIRLArpdasdAEIREALERAGLDEFVAALPQ-GLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
|
170 180
....*....|....*....|...
gi 116734710 699 SRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:TIGR02857 493 TEAEVLEALRALAQGRTVLLVTH 515
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
520-721 |
1.16e-22 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 104.36 E-value: 1.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 520 EAEPEDLVaGIKIKHLSkvFRVGNkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ 599
Cdd:TIGR02868 326 GAVGLGKP-TLELRDLS--AGYPG-APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSS 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 600 -DMVQIRKSLGLCPQHDILFDNlTVAEHLYfyaqlkgLSRQKCP-EEVKQMLHIIGLED-----------KWNSRSRFLS 666
Cdd:TIGR02868 402 lDQDEVRRRVSVCAQDAHLFDT-TVRENLR-------LARPDATdEELWAALERVGLADwlralpdgldtVLGEGGARLS 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 667 GGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:TIGR02868 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
545-721 |
1.24e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 97.64 E-value: 1.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayISGYEISQDMVQIRKSLGLCPQHDILFDNLTVA 624
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAQLKGlSRQKCPEEVkqmLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIW 704
Cdd:PRK13539 92 ENLEFWAAFLG-GEELDIAAA---LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
|
170
....*....|....*...
gi 116734710 705 DLLQ-RQKSDRTIVLTTH 721
Cdd:PRK13539 168 ELIRaHLAQGGIVIAATH 185
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
532-750 |
1.58e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 101.33 E-value: 1.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFrvGNKdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKslgLC 611
Cdd:PRK11432 9 LKNITKRF--GSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD---IC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 P--QHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHII---GLEDKWNSRsrfLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK11432 82 MvfQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVdlaGFEDRYVDQ---ISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS---------SLFL 750
Cdd:PRK11432 159 LFDEPLSNLDANLRRSMREKIRelQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSpqelyrqpaSRFM 233
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
530-746 |
1.60e-22 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 98.93 E-value: 1.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvfrVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:PRK11231 3 LRTENLT----VGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlSSRQLARRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAE--------HLYFYAQLKGLSRQKcpeeVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALI 680
Cdd:PRK11231 79 ALLPQHHLTPEGITVRElvaygrspWLSLWGRLSAEDNAR----VNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 681 AGSKVLILDEPTSGMDaISRRA-IWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK11231 155 QDTPVVLLDEPTTYLD-INHQVeLMRLMRElNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1383-1601 |
1.78e-22 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 100.17 E-value: 1.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYC 1461
Cdd:COG1125 4 FENVTKRYPDGTV--AVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDlDPVELRRRIGYV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDHMTGRE--MLVmyARLRGIPERHIGACVENTLR--GLLLEPHANKLVRTYSGGNK-RklsTGI--ALIGEPA 1534
Cdd:COG1125 82 IQQIGLFPHMTVAEniATV--PRLLGWDKERIRARVDELLElvGLDPEEYRDRYPHELSGGQQqR---VGVarALAADPP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQG---QFkclGSPQHL 1601
Cdd:COG1125 157 ILLMDEPFGALDPITREQLQDELLRlQRELGKTIVFVTHDIDEALKLGDRIAVMREGrivQY---DTPEEI 224
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
530-746 |
1.83e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 100.93 E-value: 1.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnkDRAAV-RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKsL 608
Cdd:PRK10851 3 IEIANIKKSF-----GRTQVlNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAEHLYFyaQLKGLSRQKCP------EEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAG 682
Cdd:PRK10851 77 GFVFQHYALFRHMTVFDNIAF--GLTVLPRRERPnaaaikAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 683 SKVLILDEPTSGMDAISRRAIWDLLqRQKSDR---TIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK10851 155 PQILLLDEPFGALDAQVRKELRRWL-RQLHEElkfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1389-1601 |
4.27e-22 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 98.10 E-value: 4.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1389 VYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----DVGKVR-QRIGYCPQ 1463
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAmsrkELRELRrKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1464 FDALLDHMTGREMLVMYARLRGIP--ERHIGAcvENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP 1541
Cdd:cd03294 110 SFALLPHRTVLENVAFGLEVQGVPraEREERA--AEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1542 STGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:cd03294 188 FSALDPLIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
559-739 |
4.70e-22 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 95.39 E-value: 4.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSML-----TGLfppTSGRAYISGYEISQDmvqIRKSLGLCPQHDILFDNLTVAEHLYFYAQL 633
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLagrktAGV---ITGEILINGRPLDKN---FQRSTGYVEQQDVHSPNLTVREALRFSALL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 634 KGLSrqkcpeevkqmlhiigLEDkwnsrsrflsggmRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR-QKS 712
Cdd:cd03232 107 RGLS----------------VEQ-------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKlADS 157
|
170 180
....*....|....*....|....*....
gi 116734710 713 DRTIVLTTHfMDEADLLG--DRIAIMAKG 739
Cdd:cd03232 158 GQAILCTIH-QPSASIFEkfDRLLLLKRG 185
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
530-741 |
4.75e-22 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 97.41 E-value: 4.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDraAVRDLNLNLYEGQITVLLGHNGAGKTT---TLSMLTGLFPP--TSGRAYISGYEI---SQDM 601
Cdd:COG1117 12 IEVRNLN--VYYGDKQ--ALKDINLDIPENKVTALIGPSGCGKSTllrCLNRMNDLIPGarVEGEILLDGEDIydpDVDV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQ------HDIlFDNltVAehlyFYAQLKGL-SRQKCPEEVKQMLHIIGL----EDKWNSRSRFLSGGMR 670
Cdd:COG1117 88 VELRRRVGMVFQkpnpfpKSI-YDN--VA----YGLRLHGIkSKSELDEIVEESLRKAALwdevKDRLKKSALGLSGGQQ 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 671 RKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
530-741 |
5.52e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 95.07 E-value: 5.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:cd03247 1 LSINNVS--FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNlTVAEHLyfyaqlkglsrqkcpeevkqmlhiigledkwnsrSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03247 79 VLNQRPYLFDT-TLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHfmdeaDLLG----DRIAIMAKGEL 741
Cdd:cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITH-----HLTGiehmDKILFLENGKI 174
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1398-1598 |
6.72e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 96.69 E-value: 6.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhRISS--DVGkvrqrIGYCPQfdalldhMTGRE 1475
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG-RVSAllELG-----AGFHPE-------LTGRE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1476 MLVMYARLRGIPERHIGACV-------EntlrgllLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP-STGmDP 1547
Cdd:COG1134 108 NIYLNGRLLGLSRKEIDEKFdeivefaE-------LGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVlAVG-DA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1548 VARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:COG1134 180 AFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
495-741 |
6.85e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 101.80 E-value: 6.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 495 GKPRAVAGK-EEEDSDPEKAlrnEYFEAEpEDLvagIKIKHLSKvfRVGNKDRA---AVRDLNLNLYEGQITVLLGHNGA 570
Cdd:TIGR03269 251 GTPDEVVAVfMEGVSEVEKE---CEVEVG-EPI---IKVRNVSK--RYISVDRGvvkAVDNVSLEVKEGEIFGIVGTSGA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 571 GKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIR--------KSLGLCPQ------HDILFDNLTVAEHLYFyaqlkgl 636
Cdd:TIGR03269 322 GKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGpdgrgrakRYIGILHQeydlypHRTVLDNLTEAIGLEL------- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 637 srqkcPEEVKQM-----LHIIGLEDKW-----NSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD- 705
Cdd:TIGR03269 395 -----PDELARMkavitLKMVGFDEEKaeeilDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHs 469
|
250 260 270
....*....|....*....|....*....|....*..
gi 116734710 706 -LLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:TIGR03269 470 iLKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
530-746 |
7.46e-22 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 96.02 E-value: 7.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:cd03244 3 IEFKNVS--LRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNlTVAEHLYFYAQ------LKGLSRQKCPEEVKQMLhiIGLEDKWNSRSRFLSGGMRRKLSIGIALIAG 682
Cdd:cd03244 81 SIIPQDPVLFSG-TIRSNLDPFGEysdeelWQALERVGLKEFVESLP--GGLDTVVEEGGENLSVGQRQLLCLARALLRK 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 683 SKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH----FMDEadllgDRIAIMAKGELQCCGS 746
Cdd:cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHrldtIIDS-----DRILVLDKGRVVEFDS 220
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1398-1703 |
9.16e-22 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 99.04 E-value: 9.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTtfkmltgeesltsgdAFVGGHRISSDVGK--------------VRQRIG-YCP 1462
Cdd:NF000106 28 AVDGVDLDVREGTVLGVLGP*GAA**R---------------GALPAHV*GPDAGRrpwrf*twcanrraLRRTIG*HRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 QFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPS 1542
Cdd:NF000106 93 VR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1543 TGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGsGYSLRAKVQSEGQQE 1622
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG-GRTLQIRPAHAAELD 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1623 ALEEFKAFVDLTFPGSVLEDEHQGMVHYHLPGrDLSWAKVFGILekAKEKYGVDDYSVSQISLEQVFLSFAHLQPPTAEE 1702
Cdd:NF000106 252 RMVGAIAQAGLDGIAGATADHEDGVVNVPIVS-DEQLSAVVGML--GERGFTISGHQHPSAQL*EVFLAITGQKTSEAAD 328
|
.
gi 116734710 1703 G 1703
Cdd:NF000106 329 G 329
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
550-759 |
1.48e-21 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 98.56 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 550 RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYIsGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYF 629
Cdd:PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 630 YAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR---RA-IWD 705
Cdd:PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRvqmRIeISR 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 706 LLQRQKsdRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLkqkygagYH 759
Cdd:PRK11000 179 LHKRLG--RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL-------YH 223
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1398-1591 |
1.71e-21 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 94.91 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhRISSDVGkvrqrIGYcpqfdALLDHMTGREML 1477
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSSLLG-----LGG-----GFNPELTGRENI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP-STG----MDPVARRL 1552
Cdd:cd03220 106 YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVlAVGdaafQEKCQRRL 185
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 1553 lwdtvARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03220 186 -----RELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1395-1592 |
2.30e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 93.27 E-value: 2.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLAVDRL---------SLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVGK-VRQRIGYCPQ 1463
Cdd:cd03215 3 PVLEVRGLsvkgavrdvSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrRSPRDaIRAGIAYVPE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1464 fdalldhmtgremlvmyarlrgipERHIGACV------ENTLRGLLLephanklvrtySGGNKRKLSTGIALIGEPAVIF 1537
Cdd:cd03215 83 ------------------------DRKREGLVldlsvaENIALSSLL-----------SGGNQQKVVLARWLARDPRVLI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
545-762 |
2.46e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 96.03 E-value: 2.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIRKSLGLCPQH--DILFDNl 621
Cdd:PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIrEVRKFVGLVFQNpdDQIFSP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:PRK13652 95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 702 AIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS--SLFLKQKYGAGYHMTL 762
Cdd:PRK13652 175 ELIDFLNDlpETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTveEIFLQPDLLARVHLDL 239
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
530-753 |
3.37e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 94.84 E-value: 3.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgNKdRAAVRDLNLNLYEGQITVLLGHNGAGKTT---TLSMLTGLFP--PTSGRAYISGYEI---SQDM 601
Cdd:PRK14239 6 LQVSDLSVYY---NK-KKALNSVSLDFYPNEITALIGPSGSGKSTllrSINRMNDLNPevTITGSIVYNGHNIyspRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQHDILFDnLTVAEHLYFYAQLKGL-SRQKCPEEVKQMLhiIG------LEDKWNSRSRFLSGGMRRKLS 674
Cdd:PRK14239 82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIkDKQVLDEAVEKSL--KGasiwdeVKDRLHDSALGLSGGQQQRVC 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 675 IGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS--SLFLKQ 752
Cdd:PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDtkQMFMNP 238
|
.
gi 116734710 753 K 753
Cdd:PRK14239 239 K 239
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1383-1591 |
3.60e-21 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 92.11 E-value: 3.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEqrvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsdvgkvrqrigycp 1462
Cdd:cd03216 3 LRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 qFDALLDhmtgremlvmyARLRGIperhigACVentlrglllephanklvrtY--SGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03216 66 -FASPRD-----------ARRAGI------AMV-------------------YqlSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1383-1591 |
3.63e-21 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 94.17 E-value: 3.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESL-----TSGDAFVGGHRISS---DVGKV 1454
Cdd:cd03260 3 LRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDldvDVLEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 RQRIGYCPQFDALLdHMTGREMLVMYARLRGI-PERHIGACVENTLRGLLL------EPHANKLvrtySGGNKRKLSTGI 1527
Cdd:cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIkLKEELDERVEEALRKAALwdevkdRLHALGL----SGGQQQRLCLAR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1528 ALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESgKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGR 217
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
550-760 |
3.79e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 94.14 E-value: 3.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 550 RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ-IRKSLGLCPQHDILFDNlTVAEHLY 628
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRwLRSQIGLVSQEPVLFDG-TIAENIR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 629 FyaqlkGLSRQKCPEEV----KQMLH--IIGLEDKWNS----RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAI 698
Cdd:cd03249 99 Y-----GKPDATDEEVEeaakKANIHdfIMSLPDGYDTlvgeRGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 699 SRRAIWDLLQRQKSDRTIVLTTHfmdeaDLL----GDRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Cdd:cd03249 174 SEKLVQEALDRAMKGRTTIVIAH-----RLStirnADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1397-1593 |
5.00e-21 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 93.09 E-value: 5.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSdvgKVRQR-IGYCPQ--FDALLDHMTG 1473
Cdd:cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKsIGYVMQdvDYQLFTDSVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVmyaRLRGIPERhiGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLL 1553
Cdd:cd03226 91 EELLL---GLKELDAG--NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 1554 WDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFK 1593
Cdd:cd03226 166 GELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
548-746 |
7.85e-21 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 93.20 E-value: 7.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP----TSGRAYISGYEISQDMVQIRKsLGLCPQHDILFDN--L 621
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSIRGRH-IATIMQNPRTAFNplF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAI 698
Cdd:TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYpfqLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 699 SRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:TIGR02770 160 NQARVLKLLRelRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
539-741 |
9.89e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 93.44 E-value: 9.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 539 FRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLF-----PPTSGRAYISGYEI-SQDMVQIRKSLGLCP 612
Cdd:PRK14247 9 LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIfKMDVIELRRRVQMVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 613 QHDILFDNLTVAEHLYFYAQLKGL--SRQKCPEEVKQMLHIIGL----EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK14247 89 QIPNPIPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK14247 169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
523-741 |
1.59e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 92.15 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDLVAGIKIKHLSKVFRVgNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DM 601
Cdd:cd03248 5 PDHLKGIVKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQHDILFDNlTVAEHLYFyaqlkGLsrQKCP-EEVK---QMLH----IIGLEDKWNS----RSRFLSGGM 669
Cdd:cd03248 84 KYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GL--QSCSfECVKeaaQKAHahsfISELASGYDTevgeKGSQLSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 670 RRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADlLGDRIAIMAKGEL 741
Cdd:cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1383-1591 |
1.72e-20 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 92.63 E-value: 1.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK----VRQRI 1458
Cdd:cd03256 3 VENLSKTYPNGKK--ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKalrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGREMlVMYARL----------RGIPERHIGACVENtLRGLLLEPHANKLVRTYSGGNKRKLSTGIA 1528
Cdd:cd03256 81 GMIFQQFNLIERLSVLEN-VLSGRLgrrstwrslfGLFPKEEKQRALAA-LERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1529 LIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRiNREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
556-739 |
1.87e-20 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 97.81 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 556 LYEGQITVLLGHNGAGKTTTLSMLTGLFPP---TSGRAYISGYEISQDmvQIRKSLGLCPQHDILFDNLTVAEHLYFYAQ 632
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPIDAK--EMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 633 LK---GLSRQKCPEEVKQMLHIIGLEDKWNS------RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAI 703
Cdd:TIGR00955 126 LRmprRVTKKEKRERVDEVLQALGLRKCANTrigvpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 704 WDLLQR-QKSDRTIVLTTHfMDEADL--LGDRIAIMAKG 739
Cdd:TIGR00955 206 VQVLKGlAQKGKTIICTIH-QPSSELfeLFDKIILMAEG 243
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
548-746 |
1.95e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 93.53 E-value: 1.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQI------RKSLGLC---PQHDILF 618
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkevkrlRKEIGLVfqfPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 619 DnlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA 697
Cdd:PRK13645 106 E--TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFeLSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 698 ISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13645 184 KGEEDFINLFERlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
530-742 |
1.95e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.06 E-value: 1.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayisgYEISQDmVQIrkslG 609
Cdd:COG0488 316 LELEGLSKSY----GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-----VKLGET-VKI----G 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQH-DILFDNLTVAEHlyfyaqLKGLSRQKCPEEVKQMLHIIGL-EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:COG0488 382 YFDQHqEELDPDKTVLDE------LRDGAPGGTEQEVRGYLGRFLFsGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLL 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQRQKSdrTIVLTTH---FMDEadlLGDRIAIMAKGELQ 742
Cdd:COG0488 456 LDEPTNHLDIETLEALEEALDDFPG--TVLLVSHdryFLDR---VATRILEFEDGGVR 508
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1381-1591 |
2.14e-20 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 90.13 E-value: 2.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIG 1459
Cdd:cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQfDALLDHMTgremlvmyarLRgiperhigacvENTLrglllephanklvrtySGGNKRKLStgIA--LIGEPAVIF 1537
Cdd:cd03228 80 YVPQ-DPFLFSGT----------IR-----------ENIL----------------SGGQRQRIA--IAraLLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARAREsGKAIIITSHSMEECEaLCTRLAIMVQGQ 1591
Cdd:cd03228 120 LDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
543-760 |
2.35e-20 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 91.91 E-value: 2.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 543 NKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFDNl 621
Cdd:cd03253 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVLFND- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEHLYfYAQLKGlsrqkCPEEV-----KQMLH--IIGLEDKWNS----RSRFLSGGMRRKLSIGIALIAGSKVLILDE 690
Cdd:cd03253 90 TIGYNIR-YGRPDA-----TDEEVieaakAAQIHdkIMRFPDGYDTivgeRGLKLSGGEKQRVAIARAILKNPPILLLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 691 PTSGMDAISRRAIWDLLQRQKSDRTIVLTTH----FMDeadllGDRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Cdd:cd03253 164 ATSALDTHTEREIQAALRDVSKGRTTIVIAHrlstIVN-----ADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
530-746 |
4.31e-20 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 91.72 E-value: 4.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG4559 2 LEAENLS--VRLGG--RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwspwELARRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 kslGLCPQHDIL-FDnLTVAE--------HlyfyaqlkGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIG 676
Cdd:COG4559 78 ---AVLPQHSSLaFP-FTVEEvvalgrapH--------GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 677 IALI-------AGSKVLILDEPTSGMD-----AISRRAiwdllqRQKSDRTI----VLttHFMDEADLLGDRIAIMAKGE 740
Cdd:COG4559 146 RVLAqlwepvdGGPRWLFLDEPTSALDlahqhAVLRLA------RQLARRGGgvvaVL--HDLNLAAQYADRILLLHQGR 217
|
....*.
gi 116734710 741 LQCCGS 746
Cdd:COG4559 218 LVAQGT 223
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1357-1584 |
6.27e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 95.52 E-value: 6.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1357 EDQDVADERTRILAPSPDSLLHTPLIIKELSKVYEQRvPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLT 1436
Cdd:COG0488 292 EEPPRRDKTVEIRFPPPERLGKKVLELEGLSKSYGDK-TLL--DDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPD 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1437 SGDaFVGGHRIssdvgkvrqRIGYCPQ-FDALLDHMTGREMLVMYArlRGIPERHigacVENTLRGLLLEP-HANKLVRT 1514
Cdd:COG0488 369 SGT-VKLGETV---------KIGYFDQhQEELDPDKTVLDELRDGA--PGGTEQE----VRGYLGRFLFSGdDAFKPVGV 432
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1515 YSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDtvARARESGkAIIITSHSMEECEALCTRL 1584
Cdd:COG0488 433 LSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEE--ALDDFPG-TVLLVSHDRYFLDRVATRI 499
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
530-745 |
6.36e-20 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 95.62 E-value: 6.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNkdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLG 609
Cdd:PRK09700 6 ISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 --LCPQHDILFDNLTVAEHLYFYaqlKGLSRQKC----------PEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGI 677
Cdd:PRK09700 82 igIIYQELSVIDELTVLENLYIG---RHLTKKVCgvniidwremRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1399-1604 |
6.40e-20 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 90.86 E-value: 6.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISsDVGKVRQRIGYCPQFDALLDHMTGREMLV 1478
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1479 MYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVA 1558
Cdd:cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 116734710 1559 RAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSK 1604
Cdd:cd03299 174 KIRkEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1379-1599 |
7.00e-20 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 93.86 E-value: 7.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS------DV 1451
Cdd:PRK09452 12 SPLVeLRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHvpaenrHV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1452 GKVRQriGYcpqfdALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIG 1531
Cdd:PRK09452 89 NTVFQ--SY-----ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKAlQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
530-746 |
7.71e-20 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 90.91 E-value: 7.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKvfRVGNKdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:COG4604 2 IEIKNVSK--RYGGK--VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATtPSRELAKRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILFDNLTVAEHLYF--YAQLKGLSRQKCPEEVKQMLHIIGLEDkwnSRSRF---LSGGMRRKlsigiALIA-- 681
Cdd:COG4604 78 AILRQENHINSRLTVRELVAFgrFPYSKGRLTAEDREIIDEAIAYLDLED---LADRYldeLSGGQRQR-----AFIAmv 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 682 ---GSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:COG4604 150 laqDTDYVLLDEPLNNLDMKHSVQMMKLLRRlaDELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGT 219
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
530-739 |
8.75e-20 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 90.19 E-value: 8.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFR---VGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGR-AYISGYEI-------S 598
Cdd:COG4778 5 LEVENLSKTFTlhlQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSiLVRHDGGWvdlaqasP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 599 QDMVQIRKS-LGLCPQH----------DIlfdnltVAEHLYfyaqLKGLSRQKCPEEVKQMLHIIGL-EDKWNSRSRFLS 666
Cdd:COG4778 85 REILALRRRtIGYVSQFlrviprvsalDV------VAEPLL----ERGVDREEARARARELLARLNLpERLWDLPPATFS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 667 GGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTThFMDEA--DLLGDRIAIMAKG 739
Cdd:COG4778 155 GGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGI-FHDEEvrEAVADRVVDVTPF 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
498-741 |
8.86e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 95.09 E-value: 8.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 498 RAVAGKEEEDSDPEKalrneyfEAEPEDLVagIKIKHLSkvfrvgnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLS 577
Cdd:COG1129 234 RLMVGRELEDLFPKR-------AAAPGEVV--LEVEGLS--------VGGVVRDVSFSVRAGEILGIAGLVGAGRTELAR 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 578 MLTGLFPPTSGRAYISGYEIS----QDMVQ--I------RKSLGLCPQHDILfDNLTVAeHLYFYAQLKGLSRQKCPEEV 645
Cdd:COG1129 297 ALFGADPADSGEIRLDGKPVRirspRDAIRagIayvpedRKGEGLVLDLSIR-ENITLA-SLDRLSRGGLLDRRRERALA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 646 KQM---LHIigledKWNSRS---RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVL 718
Cdd:COG1129 375 EEYikrLRI-----KTPSPEqpvGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEgKAVIV 449
|
250 260
....*....|....*....|....*
gi 116734710 719 TTHFMDEadLLG--DRIAIMAKGEL 741
Cdd:COG1129 450 ISSELPE--LLGlsDRILVMREGRI 472
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
545-757 |
1.04e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 96.35 E-value: 1.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQIRKSLGLCPQhdI-------- 616
Cdd:NF033858 13 KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLG----GDMADARHRRAVCPR--Iaympqglg 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 --LFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLedkwnsrSRF-------LSGGMRRKLSIGIALIAGSKVLI 687
Cdd:NF033858 87 knLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGL-------APFadrpagkLSGGMKQKLGLCCALIHDPDLLI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQRQKSDR---TIVLTTHFMDEADLLgDRIAIMAKGELQCCGSSLFLKQKYGAG 757
Cdd:NF033858 160 LDEPTTGVDPLSRRQFWELIDRIRAERpgmSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLARTGAD 231
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
539-741 |
1.05e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 90.67 E-value: 1.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 539 FRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLF-----PPTSGRAYISG---YEISQDMVQIRKSLGL 610
Cdd:PRK14267 10 LRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGrniYSPDVDPIEVRREVGM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 611 CPQHDILFDNLTVAEHLYFYAQLKGL--SRQKCPEEVKQMLHIIGL----EDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK14267 90 VFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPK 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1381-1591 |
1.14e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.04 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLLaVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIG 1459
Cdd:cd03246 1 LEVENVSFRYPGAEPPV-LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDhmtgremlvmyarlrgiperhiGACVENTLrglllephanklvrtySGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:cd03246 80 YLPQDDELFS----------------------GSIAENIL----------------SGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1540 EPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEAlCTRLAIMVQGQ 1591
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1408-1591 |
1.19e-19 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 89.28 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1408 KGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGH-----RISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYAR 1482
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1483 LRGIPERHIgaCVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARE 1562
Cdd:cd03297 102 RKRNREDRI--SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
|
170 180 190
....*....|....*....|....*....|
gi 116734710 1563 S-GKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03297 180 NlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
546-721 |
1.31e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 88.57 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAE 625
Cdd:TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGLSRQKCPEEVKQMlhiiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD 705
Cdd:TIGR01189 93 NLHFWAAIHGGAQRTIEDALAAV----GLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAG 168
|
170 180
....*....|....*....|
gi 116734710 706 L----LQRQKSdrtIVLTTH 721
Cdd:TIGR01189 169 LlrahLARGGI---VLLTTH 185
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
548-758 |
1.87e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 89.55 E-value: 1.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--QDMVQIRKSLGLCPQHDILFDNLTVAE 625
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITdwQTAKIMREAVAIVPEGRRVFSRMTVEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLY---FYAqlkglSRQKCPEEVKQMLHIIG-LEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:PRK11614 100 NLAmggFFA-----ERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 702 AIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGE--LQCCGSSLFLKQKYGAGY 758
Cdd:PRK11614 175 QIFDTIEQLREQgMTIFLVEQNANQALKLADRGYVLENGHvvLEDTGDALLANEAVRSAY 234
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
529-739 |
2.69e-19 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 88.92 E-value: 2.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 529 GIKIKHLSKVFrvGNKDraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-------QDM 601
Cdd:COG4161 2 SIQLKNINCFY--GSHQ--ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqkpseKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQHDILFDNLTVAEHLyFYAQLK--GLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL 679
Cdd:COG4161 78 RLLRQKVGMVFQQYNLWPHLTVMENL-IEAPCKvlGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 680 IAGSKVLILDEPTSGMD-AISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:COG4161 157 MMEPQVLLFDEPTAALDpEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKG 217
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
530-739 |
2.81e-19 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 89.00 E-value: 2.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI---SQDMVQIRK 606
Cdd:PRK09493 2 IEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLGLCPQHDILFDNLTVAEHLYFYA-QLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKV 685
Cdd:PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPlRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 686 LILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEgMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
535-742 |
3.61e-19 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 88.33 E-value: 3.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 535 LSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIR-----KSLG 609
Cdd:PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKaelrnQKLG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 690 EPTSGMDAISRRAIWDLL----QRQKSDRTIVltTHFMDEADLLgDRIAIMAKGELQ 742
Cdd:PRK11629 171 EPTGNLDARNADSIFQLLgelnRLQGTAFLVV--THDLQLAKRM-SRQLEMRDGRLT 224
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
545-749 |
3.75e-19 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 88.99 E-value: 3.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP----TSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDN 620
Cdd:PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 L-TVAEHlyfyAQLKGLSRQKcPEEVKQMLHII---GLEDKWNSRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:PRK10418 95 LhTMHTH----ARETCLALGK-PADDATLTAALeavGLENAARVLKLYpfeMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 694 GMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS--SLF 749
Cdd:PRK10418 170 DLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDveTLF 229
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
551-739 |
4.17e-19 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 87.55 E-value: 4.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQI---RKSLGLCPQHDILFDNLTVAEHL 627
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING----VDVTAAppaDRPVSMLFQENNLFAHLTVEQNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 628 YFyaqlkGLS-RQKCPEEVKQMLHII----GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRA 702
Cdd:cd03298 92 GL-----GLSpGLKLTAEDRQAIEVAlarvGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 703 IWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:cd03298 167 MLDLVLdlHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1377-1620 |
4.28e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.92 E-value: 4.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1377 LHTPLIIKELSKVYEQRVPLLAVDrlsLAVQKGECFGLLGFNGAGKTTTFKMLTGeesLTSGDAFVGGH----------- 1445
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSG---LITGDKSAGSHiellgrtvqre 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1446 -RISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYArLRGIPERHigACV--------ENTLRGLL---LEPHANKLVR 1513
Cdd:PRK09984 75 gRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWR--TCFswftreqkQRALQALTrvgMVHFAHQRVS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1514 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
250 260
....*....|....*....|....*....
gi 116734710 1593 KCLGSPQHLKS-KFGSGYSLRAKVQSEGQ 1620
Cdd:PRK09984 232 FYDGSSQQFDNeRFDHLYRSINRVEENAK 260
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
530-760 |
4.32e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 93.35 E-value: 4.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:PRK11160 339 LTLNNVS--FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQAI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDILF-----DNLTVAEHlyfyaqlkglsrQKCPEEVKQMLHIIGLE---------DKW-NSRSRFLSGGMRRKL 673
Cdd:PRK11160 417 SVVSQRVHLFsatlrDNLLLAAP------------NASDEALIEVLQQVGLEklleddkglNAWlGEGGRQLSGGEQRRL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 674 SIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHfmdeaDLLG----DRIAIMAKGELQCCGSSLF 749
Cdd:PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH-----RLTGleqfDRICVMDNGQIIEQGTHQE 559
|
250
....*....|.
gi 116734710 750 LKQKYGAGYHM 760
Cdd:PRK11160 560 LLAQQGRYYQL 570
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
523-767 |
5.13e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.91 E-value: 5.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDLVAGI--KIKHLSKVF-RVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ 599
Cdd:PRK13631 13 PNPLSDDIilRVKNLYCVFdEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 600 DMV-----------------QIRKSLGLC---PQHDILFDnlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWN 659
Cdd:PRK13631 93 KKNnhelitnpyskkiknfkELRRRVSMVfqfPEYQLFKD--TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 660 SRSRF-LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDL-LQRQKSDRTIVLTTHFMDEADLLGDRIAIMA 737
Cdd:PRK13631 171 ERSPFgLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLiLDAKANNKTVFVITHTMEHVLEVADEVIVMD 250
|
250 260 270
....*....|....*....|....*....|..
gi 116734710 738 KGELQCCGS--SLFLKQKYgagYHMTLVKEPH 767
Cdd:PRK13631 251 KGKILKTGTpyEIFTDQHI---INSTSIQVPR 279
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
530-739 |
6.07e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 88.27 E-value: 6.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI--------SQDM 601
Cdd:PRK11264 4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdtarslsqQKGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 V-QIRKSLGLCPQHDILFDNLTVAEHLY-FYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL 679
Cdd:PRK11264 80 IrQLRQHVGFVFQNFNLFPHRTVLENIIeGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 680 IAGSKVLILDEPTSGMDA-ISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPeLVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1384-1591 |
6.40e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 92.39 E-value: 6.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRV-----PLLAVDRL---------SLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS- 1448
Cdd:COG1129 239 RELEDLFPKRAaapgeVVLEVEGLsvggvvrdvSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRi 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1449 SDVGK-VRQRIGYCP---QFDALLDHMTGRE-----MLVMYARLRGIPERHIGACVENTLRGLLLE-PHANKLVRTYSGG 1518
Cdd:COG1129 319 RSPRDaIRAGIAYVPedrKGEGLVLDLSIREnitlaSLDRLSRGGLLDRRRERALAEEYIKRLRIKtPSPEQPVGNLSGG 398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1519 NKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG1129 399 NQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGR 471
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1383-1541 |
6.67e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.44 E-value: 6.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRvPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFvgghrISSDVgkvrqRIGYCP 1462
Cdd:COG0488 1 LENLSKSFGGR-PLL--DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVS-----IPKGL-----RIGYLP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 QFDALLDHMTGREMLVM----------------------------YARLRGIPERHIG----ACVENTLRGL-LLEPHAN 1509
Cdd:COG0488 68 QEPPLDDDLTVLDTVLDgdaelraleaeleeleaklaepdedlerLAELQEEFEALGGweaeARAEEILSGLgFPEEDLD 147
|
170 180 190
....*....|....*....|....*....|..
gi 116734710 1510 KLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP 1541
Cdd:COG0488 148 RPVSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1381-1599 |
7.03e-19 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 90.21 E-value: 7.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVgKVRQR-IG 1459
Cdd:COG1118 3 IEVRNISKRFGSFT---LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNL-PPRERrVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMlVMYA-RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNK------RklstgiALIGE 1532
Cdd:COG1118 79 FVFQHYALFPHMTVAEN-IAFGlRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRqrvalaR------ALAVE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:COG1118 152 PEVLLLDEPFGALDAKVRKELRRWLRRLhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPD 219
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
523-760 |
9.98e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 92.86 E-value: 9.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDLVAGIKIKHLSkvFRVGNK-DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-D 600
Cdd:TIGR00958 472 PLNLEGLIEFQDVS--FSYPNRpDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyD 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIRKSLGLCPQHDILFdNLTVAEHLYFyaqlkGLsrQKCPEE----VKQMLH----IIGLEDKWNS----RSRFLSGG 668
Cdd:TIGR00958 550 HHYLHRQVALVGQEPVLF-SGSVRENIAY-----GL--TDTPDEeimaAAKAANahdfIMEFPNGYDTevgeKGSQLSGG 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 669 MRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLlqRQKSDRTIVLTTHFMDEADlLGDRIAIMAKGELQCCGSSL 748
Cdd:TIGR00958 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHK 698
|
250
....*....|..
gi 116734710 749 FLKQKYGAGYHM 760
Cdd:TIGR00958 699 QLMEDQGCYKHL 710
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1383-1591 |
1.01e-18 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 89.37 E-value: 1.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRV-PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----DVGKVRQR 1457
Cdd:COG1135 4 LENLSKTFPTKGgPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTAlserELRAARRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDHMTGREMlVMYA-RLRGIPERHIGACVENtlrgLL----LEPHANKLVRTYSGGNKRKLstGIA--LI 1530
Cdd:COG1135 84 IGMIFQHFNLLSSRTVAEN-VALPlEIAGVPKAEIRKRVAE----LLelvgLSDKADAYPSQLSGGQKQRV--GIAraLA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1531 GEPAVIFLDEPSTGMDP------------VARRLlwdtvararesGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG1135 157 NNPKVLLCDEATSALDPettrsildllkdINREL-----------GLTIVLITHEMDVVRRICDRVAVLENGR 218
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
923-1261 |
1.08e-18 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 89.76 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 923 WKMVAAQVLVPLTCVTLALLAINYSSELFDDpmlrltlgeygrTVVPFSVPGTSQLGQQLSEHLKDALQAEGQEPREVLG 1002
Cdd:pfam12698 1 KSFLIITLLLPILLILLLGLIFSNAVNDPEE------------LPVAVVDEDNSSLSRQLVRALEASPTVNLVQYVDSEE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1003 DLEEfLIFRASVEGG-----GFNERCLVaasfrdvGERTVVNALFNNQAYHSPATALAVVDNLLFKLL---CGPHASIVV 1074
Cdd:pfam12698 69 EAKE-ALKNGKIDGLlvipkGFSKDLLK-------GESATVTVYINSSNLLVSKLILNALQSLLQQLNasaLVLLLEALS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1075 SNFPQPRSALQAAKDQfnegrKGFDIALNLLFAMAFLASTFSILA---VSERAVQAKHVQFVSGVHVASFWLSALLWDLI 1151
Cdd:pfam12698 141 TSAPIPVESTPLFNPQ-----SGYAYYLVGLILMIIILIGAAIIAvsiVEEKESRIKERLLVSGVSPLQYWLGKILGDFL 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1152 SFLIPSLLLLVVFKAFDVraftRDGHMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIATFLMVTIm 1231
Cdd:pfam12698 216 VGLLQLLIILLLLFGIGI----PFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGLFPL- 290
|
330 340 350
....*....|....*....|....*....|
gi 116734710 1232 ripavklEELSKTLDHVFLVLPNHCLGMAV 1261
Cdd:pfam12698 291 -------EDPPSFLQWIFSIIPFFSPIDGL 313
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
522-741 |
1.52e-18 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 92.11 E-value: 1.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 522 EPEDLVAGIKIKHLSKVFRVGNKdraAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-D 600
Cdd:TIGR01193 466 ELNNLNGDIVINDVSYSYGYGSN---ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiD 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIRKSLGLCPQHDILFDNlTVAEHLyfyaqLKGLSRQKCPEEVKQMLHI-----------IGLEDKWNSRSRFLSGGM 669
Cdd:TIGR01193 543 RHTLRQFINYLPQEPYIFSG-SILENL-----LLGAKENVSQDEIWAACEIaeikddienmpLGYQTELSEEGSSISGGQ 616
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 670 RRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKsDRTIVLTTHFMDEADLLgDRIAIMAKGEL 741
Cdd:TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ-DKTIIFVAHRLSVAKQS-DKIIVLDHGKI 686
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
530-741 |
1.97e-18 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 86.08 E-value: 1.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGnkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:PRK10908 2 IRFEHVSKAYLGG---RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPFLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQ-HDILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK10908 79 RQIGMIFQdHHLLMDR-TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEfNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1380-1598 |
1.99e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 87.80 E-value: 1.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1380 PLIIKELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK---V 1454
Cdd:PRK13637 2 SIKIENLTHIYMEGTPFekKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 RQRIGYCPQF-DALLDHMTGREMLVMYARLRGIPERHIGACVENTLR--GLLLEPHANKLVRTYSGGNKRKLSTGIALIG 1531
Cdd:PRK13637 82 RKKVGLVFQYpEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNivGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVARARESGK-AIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1395-1591 |
2.01e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 85.72 E-value: 2.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALLDHMTG 1473
Cdd:cd03245 16 EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQ-DVTLFYGTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARLrgIPERHIGACVEntLRGL--LLEPHANKLV-------RTYSGGNKRKLSTGIALIGEPAVIFLDEPSTG 1544
Cdd:cd03245 95 RDNITLGAPL--ADDERILRAAE--LAGVtdFVNKHPNGLDlqigergRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1545 MDPVARRLLwdtVARARE--SGKAIIITSH--SMEEceaLCTRLAIMVQGQ 1591
Cdd:cd03245 171 MDMNSEERL---KERLRQllGDKTLIIITHrpSLLD---LVDRIIVMDSGR 215
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
549-740 |
4.96e-18 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 84.24 E-value: 4.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPT---SGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAE 625
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGlsrqkcpeevkqmlhiigledkwNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISrrAIwD 705
Cdd:cd03233 103 TLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--AL-E 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 706 LLQRQKSDRTIVLTTHFM------DEADLLGDRIAIMAKGE 740
Cdd:cd03233 157 ILKCIRTMADVLKTTTFVslyqasDEIYDLFDKVLVLYEGR 197
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
553-740 |
5.19e-18 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 85.19 E-value: 5.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 553 NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMvqirksLGLCP---------QHDILFDNLTV 623
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNG----QDL------TALPPaerpvsmlfQENNLFPHLTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYFyaqlkGLS-------RQKcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:COG3840 89 AQNIGL-----GLRpglkltaEQR--AQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALD 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 697 AISRRAIWDLLQRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:COG3840 162 PALRQEMLDLVDELCRERglTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1303-1613 |
5.74e-18 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 90.28 E-value: 5.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1303 VGRFVASMAASGcaYLI--LLFLIetNLLQRLRGILCALRRrrtLTElytrmpVLPEDQDVADERTRILAPSpdslLHTP 1380
Cdd:COG2274 411 LGQLIAFNILSG--RFLapVAQLI--GLLQRFQDAKIALER---LDD------ILDLPPEREEGRSKLSLPR----LKGD 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLlAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIG 1459
Cdd:COG2274 474 IELENVSFRYPGDSPP-VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQIG 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQfDALLDHMTGREMLVMYArlRGIPERHI-----GACVENTLRGL------LLEPHANKLvrtySGGNKRKLstGIA 1528
Cdd:COG2274 553 VVLQ-DVFLFSGTIRENITLGD--PDATDEEIieaarLAGLHDFIEALpmgydtVVGEGGSNL----SGGQRQRL--AIA 623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1529 --LIGEPAVIFLDEPSTGMDPVARRLLWDTVARAREsGKAIIITSHSMeECEALCTRLAIMVQGQFKCLGSPQHLKSKFG 1606
Cdd:COG2274 624 raLLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLARKG 701
|
....*..
gi 116734710 1607 SGYSLRA 1613
Cdd:COG2274 702 LYAELVQ 708
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1381-1587 |
8.81e-18 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 85.30 E-value: 8.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRV-PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI---SSDVGKVRQ 1456
Cdd:COG4525 4 LTVRHVSVRYPGGGqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVtgpGADRGVVFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RigycpqfDALLDHMTGREMLVMYARLRGIP--ERHigACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:COG4525 84 K-------DALLPWLNVLDNVAFGLRLRGVPkaERR--ARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:COG4525 155 FLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
548-739 |
1.68e-17 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 84.27 E-value: 1.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI----SQdmvQI-RKSLGLCPQHDILFDNLT 622
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeglpGH---QIaRMGVVRTFQHVRLFREMT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLyFYAQ--------LKGL--------SRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK11300 97 VIENL-LVAQhqqlktglFSGLlktpafrrAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11300 176 MLDEPAAGLNPKETKELDELIAelRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
548-741 |
2.23e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 84.27 E-value: 2.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--QDMVQIRKSLGLCPQH-DILFDNLTVA 624
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVGIVFQNpETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEdKWNSRS-RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAI 703
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSpKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 704 WDLLQR-QKSDRTIVLTTHFMDEADlLGDRIAIMAKGEL 741
Cdd:PRK13644 176 LERIKKlHEKGKTIVYITHNLEELH-DADRIIVMDRGKI 213
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1388-1572 |
2.34e-17 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 81.91 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1388 KVYEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG--EESLTSGDAFVGGHRISSDVgkvRQRIGYCPQFD 1465
Cdd:cd03232 14 PVKGGKRQLL--NNISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLDKNF---QRSTGYVEQQD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 ALLDHMTGREMLVMYARLRGIperhigaCVENtlrglllephanklvrtysggnKRKLSTGIALIGEPAVIFLDEPSTGM 1545
Cdd:cd03232 89 VHSPNLTVREALRFSALLRGL-------SVEQ----------------------RKRLTIGVELAAKPSILFLDEPTSGL 139
|
170 180
....*....|....*....|....*..
gi 116734710 1546 DPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:cd03232 140 DSQAAYNIVRFLKKLADSGQAILCTIH 166
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
530-746 |
2.53e-17 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 83.67 E-value: 2.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSL 608
Cdd:PRK13548 3 LEARNLS--VRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwSPAELARRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDIL-FDnLTVAE--------HlyfyaqlkGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL 679
Cdd:PRK13548 79 AVLPQHSSLsFP-FTVEEvvamgrapH--------GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 680 I------AGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDR----TIVLttHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13548 150 AqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERglavIVVL--HDLNLAARYADRIVLLHQGRLVADGT 224
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1407-1605 |
2.67e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 87.80 E-value: 2.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1407 QKGECFGLLGFNGAGKTT-----TFKMLTGeeSLTSGDAFVGGHRISSDvgKVRQRIGYCPQFDALLDHMTGREMLVMYA 1481
Cdd:TIGR00955 49 KPGELLAVMGSSGAGKTTlmnalAFRSPKG--VKGSGSVLLNGMPIDAK--EMRAISAYVQQDDLFIPTLTVREHLMFQA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1482 RLRgIPERHIG----ACVENTLRGLLLEPHANKL------VRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARR 1551
Cdd:TIGR00955 125 HLR-MPRRVTKkekrERVDEVLQALGLRKCANTRigvpgrVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1552 LLWDTVARARESGKAIIITSH--SMEECEaLCTRLAIMVQGQFKCLGSPQHLKSKF 1605
Cdd:TIGR00955 204 SVVQVLKGLAQKGKTIICTIHqpSSELFE-LFDKIILMAEGRVAYLGSPDQAVPFF 258
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
535-749 |
3.18e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 83.99 E-value: 3.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 535 LSKVFRVGN-----KDRAAVRDLN---LNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMV-QIR 605
Cdd:PRK13642 1 MNKILEVENlvfkyEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwNLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQH-DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK13642 81 RKIGMVFQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEAdLLGDRIAIMAKGEL--QCCGSSLF 749
Cdd:PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHeiKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIikEAAPSELF 228
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
530-741 |
3.51e-17 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 83.32 E-value: 3.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFR----VGNKDRAAV-RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----D 600
Cdd:TIGR02769 3 LEVRDVTHTYRtgglFGAKQRAPVlTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQldrkQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIRKSLGLCPQHDILFDN------LTVAEHLYFYAQLKGLSRQkcpEEVKQMLHIIGLEDK-WNSRSRFLSGGMRRKL 673
Cdd:TIGR02769 83 RRAFRRDVQLVFQDSPSAVNprmtvrQIIGEPLRHLTSLDESEQK---ARIAELLDMVGLRSEdADKLPRQLSGGQLQRI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 674 SIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRklQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
548-739 |
3.52e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 82.75 E-value: 3.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI-------SQDMVQIRKSLGLCPQHDILFDN 620
Cdd:PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsktpsDKAIRELRRNVGMVFQQYNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 LTVAEHLyFYAQLK--GLSRQKCPEEVKQMLHIIGLEDKwnsRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:PRK11124 97 LTVQQNL-IEAPCRvlGLSKDQALARAEKLLERLRLKPY---ADRFplhLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 696 DA-ISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11124 173 DPeITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1384-1575 |
3.65e-17 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 82.07 E-value: 3.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS----SDVGKVRQRIG 1459
Cdd:cd03292 4 INVTKTYPNGTA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLRRKIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 1540 EPSTGMDPVARRLLWDTVARARESGKAIIITSHSME 1575
Cdd:cd03292 162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
530-747 |
3.96e-17 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 83.14 E-value: 3.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgNKDRAaVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFppTSGRAYISGYEISQDMVQ------ 603
Cdd:PRK09984 5 IRVEKLAKTF---NQHQA-LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI--TGDKSAGSHIELLGRTVQregrla 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 --IRKS---LGLCPQHDILFDNLTVAEHL---------YFYAQLKGLSRQKcPEEVKQMLHIIGLEDKWNSRSRFLSGGM 669
Cdd:PRK09984 79 rdIRKSranTGYIFQQFNLVNRLSVLENVligalgstpFWRTCFSWFTREQ-KQRALQALTRVGMVHFAHQRVSTLSGGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 670 RRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSS 747
Cdd:PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRdiNQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1398-1603 |
4.09e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 83.59 E-value: 4.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD---VGKVRQRIGYCPQF-DALLDHMTG 1473
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDkksLLEVRKTVGIVFQNpDDQLFAPTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVA---- 1549
Cdd:PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGasqi 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1550 RRLLWDTvaraRESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1603
Cdd:PRK13639 177 MKLLYDL----NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
507-721 |
4.29e-17 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 87.00 E-value: 4.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 507 DSDPEKalRNEYFEAEPedlVAG-IKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP 585
Cdd:PRK11176 323 DLEQEK--DEGKRVIER---AKGdIEFRNVT--FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 586 TSGRAYISGYEIsQD--MVQIRKSLGLCPQHDILFdNLTVAEHLYfYAQLKGLSRQKCpEEVKQMLH----IIGLEDKWN 659
Cdd:PRK11176 396 DEGEILLDGHDL-RDytLASLRNQVALVSQNVHLF-NDTIANNIA-YARTEQYSREQI-EEAARMAYamdfINKMDNGLD 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 660 S----RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:PRK11176 472 TvigeNGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1398-1591 |
4.43e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 82.62 E-value: 4.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS--DVGKVRQRIGYCPQFDALLDHMTGRE 1475
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwqTAKIMREAVAIVPEGRRVFSRMTVEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1476 MLVM---YARLRGIPERhigacVENTLrGLLLEPHANKLVR--TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVAR 1550
Cdd:PRK11614 100 NLAMggfFAERDQFQER-----IKWVY-ELFPRLHERRIQRagTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 1551 RLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK11614 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
530-741 |
4.49e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 86.66 E-value: 4.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKT-TTLSMLtGLFPP----TSGRAYISGYEISQ----D 600
Cdd:COG4172 7 LSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDpaahPSGSILFDGQDLLGlserE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIR-KSLG---------LCPQHdilfdnlTVAEhlyfyaQL-------KGLSRQKCPEEVKQMLHIIGLEDKWNSRSR 663
Cdd:COG4172 86 LRRIRgNRIAmifqepmtsLNPLH-------TIGK------QIaevlrlhRGLSGAAARARALELLERVGIPDPERRLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 664 F---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTHfmdeaDL-----LGDRI 733
Cdd:COG4172 153 YphqLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELgmALLLITH-----DLgvvrrFADRV 227
|
....*...
gi 116734710 734 AIMAKGEL 741
Cdd:COG4172 228 AVMRQGEI 235
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
1413-1654 |
4.78e-17 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 84.78 E-value: 4.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1413 GLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV-----RQRIGYCPQFDALLDHMTGREMLVM-YARLRGi 1486
Cdd:TIGR02142 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIflppeKRRIGYVFQEARLFPHLSVRGNLRYgMKRARP- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1487 PERHIGAcvENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARESGK 1565
Cdd:TIGR02142 106 SERRISF--ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERlHAEFGI 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1566 AIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSkfgsgySLRAKVQSEGQQEALeefkafvdltFPGSVLE-DEH 1644
Cdd:TIGR02142 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA------SPDLPWLAREDQGSL----------IEGVVAEhDQH 247
|
250
....*....|
gi 116734710 1645 QGMVHYHLPG 1654
Cdd:TIGR02142 248 YGLTALRLGG 257
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1382-1609 |
4.81e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.47 E-value: 4.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1382 IIKELSK--VYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrisSDVGKV----- 1454
Cdd:PRK10070 25 IEQGLSKeqILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDG----VDIAKIsdael 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 ----RQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALI 1530
Cdd:PRK10070 101 revrRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1531 GEPAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGY 1609
Cdd:PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1398-1592 |
5.62e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 86.23 E-value: 5.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVGKVRQR-IGYCPQFDALLDHMT--- 1472
Cdd:COG1129 19 ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfRSPRDAQAAgIAIIHQELNLVPNLSvae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1473 ----GREM----LV----MYARLRGIPERHigacventlrGLLLEPHAnkLVRTYSGGNK------RklstgiALIGEPA 1534
Cdd:COG1129 99 niflGREPrrggLIdwraMRRRARELLARL----------GLDIDPDT--PVGDLSVAQQqlveiaR------ALSRDAR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:COG1129 161 VLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
530-725 |
6.04e-17 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 79.41 E-value: 6.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGrayisgyEISQDmvqirkslg 609
Cdd:cd03221 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-------IVTWG--------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 lcpqhdilfDNLTVAehlyFYAQLkglsrqkcpeevkqmlhiigledkwnsrsrflSGGMRRKLSIGIALIAGSKVLILD 689
Cdd:cd03221 61 ---------STVKIG----YFEQL--------------------------------SGGEKMRLALAKLLLENPNLLLLD 95
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 690 EPTSGMDAISRRAIWDLLQRQKsdRTIVLTTH---FMDE 725
Cdd:cd03221 96 EPTNHLDLESIEALEEALKEYP--GTVILVSHdryFLDQ 132
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
532-756 |
7.04e-17 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 84.40 E-value: 7.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVfrvgnkdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTlSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLC 611
Cdd:NF000106 20 VKHFGEV--------KAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*H 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 -PQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDE 690
Cdd:NF000106 91 rPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 691 PTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGA 756
Cdd:NF000106 171 PTTGLDPRTRNEVWDEVRSMVRDgATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGG 237
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1383-1591 |
8.37e-17 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 81.04 E-value: 8.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS---DVGKVRQRIG 1459
Cdd:cd03262 3 IKNLHKSFGDFHVL---KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDdkkNINELRQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREMlVMYA--RLRGIPErhigACVENTLRGLL----LEPHANKLVRTYSGGNKRKLSTGIALIGEP 1533
Cdd:cd03262 80 MVFQQFNLFPHLTVLEN-ITLApiKVKGMSK----AEAEERALELLekvgLADKADAYPAQLSGGQQQRVAIARALAMNP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1399-1601 |
9.74e-17 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 83.62 E-value: 9.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHrissDVGK--VRQR-IGYCPQFDALLDHMTGRE 1475
Cdd:PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE----DVTHrsIQQRdICMVFQSYALFPHMSLGE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1476 MLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWD 1555
Cdd:PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 1556 TVaraRESGKAIIITS----HSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK11432 178 KI---RELQQQFNITSlyvtHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
523-741 |
1.15e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 81.65 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDLVAGIK--IKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGrAYISG----YE 596
Cdd:PRK11247 4 TARLNQGTPllLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGtaplAE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 597 ISQD---MVQIRKslgLCPQHDILfDNLTVAehlyfyaqLKGLSRqkcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKL 673
Cdd:PRK11247 79 AREDtrlMFQDAR---LLPWKKVI-DNVGLG--------LKGQWR----DAALQALAAVGLADRANEWPAALSGGQKQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 674 SIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESlwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
526-721 |
1.32e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 85.55 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 526 LVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DM 601
Cdd:PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKS-LGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALI 680
Cdd:PRK10535 81 AQLRREhFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLL-QRQKSDRTIVLTTH 721
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILhQLRDRGHTVIIVTH 202
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
532-725 |
1.33e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 85.12 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFrvGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisqdmvqiRKSLGLC 611
Cdd:COG0488 1 LENLSKSF--G--GRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----------GLRIGYL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 PQHDILFDNLTVAEHLY-----FYAQLKGLSR--QKCPEEVKQMLHIIGLEDK------WNSRSRF-------------- 664
Cdd:COG0488 67 PQEPPLDDDLTVLDTVLdgdaeLRALEAELEEleAKLAEPDEDLERLAELQEEfealggWEAEARAeeilsglgfpeedl 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 665 ------LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRaiW--DLLQRQKSdrTIVLTTH---FMDE 725
Cdd:COG0488 147 drpvseLSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYPG--TVLVVSHdryFLDR 214
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1379-1587 |
2.04e-16 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 80.17 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLIIKELSK---VYEQ---RVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFV--GGHRI--- 1447
Cdd:COG4778 3 TLLEVENLSKtftLHLQggkRLP--VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhDGGWVdla 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1448 ---SSDVGKVRQR-IGYCPQF--------------DALLD--------HMTGREMLvmyARLrGIPERhigacventlrg 1501
Cdd:COG4778 81 qasPREILALRRRtIGYVSQFlrviprvsaldvvaEPLLErgvdreeaRARARELL---ARL-NLPER------------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1502 lL--LEPHanklvrTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEA 1579
Cdd:COG4778 145 -LwdLPPA------TFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREA 217
|
....*...
gi 116734710 1580 LCTRLAIM 1587
Cdd:COG4778 218 VADRVVDV 225
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
530-739 |
2.44e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 84.33 E-value: 2.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnkdrAAVRDL---NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRK 606
Cdd:PRK15439 12 LCARSISKQY-------SGVEVLkgiDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 607 SLG--LCPQHDILFDNLTVAEHLYFyaqlkGLSR-QKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGS 683
Cdd:PRK15439 85 QLGiyLVPQEPLLFPNLSVKENILF-----GLPKrQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 684 KVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK15439 160 RILILDEPTASLTPAETERLFSRIRElLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1396-1603 |
2.59e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 80.80 E-value: 2.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1396 LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFD--ALLDHMTG 1473
Cdd:PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQhvRLFREMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLvMYARlrgipERHIGAcveNTLRGLL------------------------LEPHANKLVRTYSGGNKRKLSTGIAL 1529
Cdd:PRK11300 98 IENL-LVAQ-----HQQLKT---GLFSGLLktpafrraesealdraatwlervgLLEHANRQAGNLAYGQQRRLEIARCM 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1603
Cdd:PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRnEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
546-721 |
2.75e-16 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.07 E-value: 2.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAE 625
Cdd:cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKglSRQKCPEEVKQMlHIIGLEDKwnsRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD 705
Cdd:cd03231 93 NLRFWHADH--SDEQVEEALARV-GLNGFEDR---PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE 166
|
170
....*....|....*...
gi 116734710 706 LLqRQKSDR--TIVLTTH 721
Cdd:cd03231 167 AM-AGHCARggMVVLTTH 183
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1398-1604 |
3.18e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 81.05 E-value: 3.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVG--KVRQRIGYCPQF-DALLDHMTG 1473
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDySRKGlmKLRESVGMVFQDpDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVA-RRL 1552
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGvSEI 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1553 LWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSK 1604
Cdd:PRK13636 181 MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
548-739 |
3.60e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 83.81 E-value: 3.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYE---------ISQDMVQIRKSLGLCPqhdilf 618
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEmrfasttaaLAAGVAIIYQELHLVP------ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 619 dNLTVAEHLYFyAQLKG----LSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSG 694
Cdd:PRK11288 93 -EMTVAENLYL-GQLPHkggiVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 695 MDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11288 171 LSAREIEQLFRVIRELRAEgRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
550-741 |
3.65e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 83.56 E-value: 3.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 550 RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLC------PQHDILFD---- 619
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpedrQSSGLYLDapla 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 620 ----NLTVAEHLYFyaqlkgLSRQKCPEEVKQMLHIIG--LEDKwNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:PRK15439 360 wnvcALTHNRRGFW------IKPARENAVLERYRRALNikFNHA-EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 694 GMDAISRRAIWDLLQRQKSDRT-IVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK15439 433 GVDVSARNDIYQLIRSIAAQNVaVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1383-1604 |
7.07e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 79.78 E-value: 7.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD-VGKVRQRIGYC 1461
Cdd:PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEnVWDIRHKIGMV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQF-DALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:PRK13650 87 FQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1541 PSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECeALCTRLAIMVQGQFKCLGSPQHLKSK 1604
Cdd:PRK13650 167 ATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
521-741 |
8.02e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 83.09 E-value: 8.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 521 AEPEDLVAGIKIKHLSkvFRVGNKdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQD 600
Cdd:PRK13657 326 IDLGRVKGAVEFDDVS--FSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQ-IRKSLGLCPQHDILFdNLTVAEHLyfyaqlkglsRQKCP----EEVKQMLH-------IIGLEDKWNS----RSRF 664
Cdd:PRK13657 403 TRAsLRRNIAVVFQDAGLF-NRSIEDNI----------RVGRPdatdEEMRAAAEraqahdfIERKPDGYDTvvgeRGRQ 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 665 LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMD---EAdllgDRIAIMAKGEL 741
Cdd:PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLStvrNA----DRILVFDNGRV 547
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1388-1592 |
9.80e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 82.41 E-value: 9.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1388 KVYEQRVPLLAVDRL--------SLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIG 1459
Cdd:PRK15439 260 RQQAAGAPVLTVEDLtgegfrniSLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 --YCPQ--------FDA--------LLDHMTGreMLVMYARLRGIPERHIGACventlrGLLLEpHANKLVRTYSGGNKR 1521
Cdd:PRK15439 340 lvYLPEdrqssglyLDAplawnvcaLTHNRRG--FWIKPARENAVLERYRRAL------NIKFN-HAEQAARTLSGGNQQ 410
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1522 KLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
530-726 |
1.07e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 79.74 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgNKDRA----AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSG-------------RAYI 592
Cdd:PRK13651 3 IKVKNIVKIF---NKKLPtelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiewifkdeknkkKTKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 593 SGYEISQDMVQ------------IRKSLGLCPQHD--ILFDNlTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKW 658
Cdd:PRK13651 80 KEKVLEKLVIQktrfkkikkikeIRRRVGVVFQFAeyQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 659 NSRSRF-LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEA 726
Cdd:PRK13651 159 LQRSPFeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNV 228
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1384-1601 |
1.41e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 78.21 E-value: 1.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI---SSDVGKVRQRIGY 1460
Cdd:PRK09493 5 KNVSKHFGPTQVL---HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFDALLDHMTGREMlVMYA--RLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:PRK09493 82 VFQQFYLFPHLTALEN-VMFGplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1539 DEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
552-741 |
1.59e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 81.81 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 552 LNLNLYEGQITVLLGHNGAGKTTTLSMLTGlFPPTSGRAYISGYEISQ-DMVQIRKSL---GLCPQ--HDILFDNLTVAE 625
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRElDPESWRKHLswvGQNPQlpHGTLRDNVLLGN 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGLSRQKCPEE-VKQMLHiiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIW 704
Cdd:PRK11174 448 PDASDEQLQQALENAWVSEfLPLLPQ--GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
|
170 180 190
....*....|....*....|....*....|....*...
gi 116734710 705 DLLQRQKSDRTIVLTTHFMDeaDLLG-DRIAIMAKGEL 741
Cdd:PRK11174 526 QALNAASRRQTTLMVTHQLE--DLAQwDQIWVMQDGQI 561
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
532-739 |
2.78e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 79.00 E-value: 2.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP---TSGRAYISGYEIsqdmvqirksL 608
Cdd:PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREI----------L 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLcPQHD-----------ILFDNLT-------VAEHLYFYAQL-KGLSRQKCPEEVKQMLHIIGLEDkwnSRSRF----- 664
Cdd:PRK09473 85 NL-PEKElnklraeqismIFQDPMTslnpymrVGEQLMEVLMLhKGMSKAEAFEESVRMLDAVKMPE---ARKRMkmyph 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 665 -LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD--RTIVLTTHfmdeaDL-----LGDRIAIM 736
Cdd:PRK09473 161 eFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITH-----DLgvvagICDKVLVM 235
|
...
gi 116734710 737 AKG 739
Cdd:PRK09473 236 YAG 238
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
530-741 |
3.69e-15 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 76.70 E-value: 3.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:COG4181 9 IELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAldedARARLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 -KSLGLCPQHDILFDNLTVAEHLYFYAQLKGlsRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:COG4181 89 aRHVGFVFQSFQLLPTLTALENVMLPLELAG--RRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLL--QRQKSDRTIVLTTHfmDEADLL-GDRIAIMAKGEL 741
Cdd:COG4181 167 ILFADEPTGNLDAATGEQIIDLLfeLNRERGTTLVLVTH--DPALAArCDRVLRLRAGRL 224
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1379-1591 |
4.43e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 80.07 E-value: 4.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEqrvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGH--RISS--D--- 1450
Cdd:COG3845 3 PPALeLRGITKRFG---GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSprDaia 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1451 --VGKVRQrigycpQFdALLDHMTGREMLVMY---------------ARLRGIPERHigacventlrGLLLEPHAnkLVR 1513
Cdd:COG3845 80 lgIGMVHQ------HF-MLVPNLTVAENIVLGleptkggrldrkaarARIRELSERY----------GLDVDPDA--KVE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1514 TysggnkrkLSTGI--------ALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLA 1585
Cdd:COG3845 141 D--------LSVGEqqrveilkALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVT 212
|
....*.
gi 116734710 1586 IMVQGQ 1591
Cdd:COG3845 213 VLRRGK 218
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1381-1587 |
4.68e-15 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 78.17 E-value: 4.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLL-AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG---EESLTSGDAFVGGHRISS----DVG 1452
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLKlsekELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1453 KVR-QRIGYCPQfDAL--LD-HMT-GREMLVMYARLRGIPERHIGACVENTLR--GLllePHANKLVRTY----SGGNKR 1521
Cdd:COG0444 82 KIRgREIQMIFQ-DPMtsLNpVMTvGDQIAEPLRIHGGLSKAEARERAIELLErvGL---PDPERRLDRYphelSGGMRQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1522 KLSTGIALIGEPAVIFLDEPSTGMDPVARR----LLWDtvaRARESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:COG0444 158 RVMIARALALEPKLLIADEPTTALDVTIQAqilnLLKD---LQRELGLAILFITHDLGVVAEIADRVAVM 224
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
545-721 |
4.81e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 75.61 E-value: 4.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVA 624
Cdd:PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAQLKGLSRQkcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKlsigIAL----IAGSKVLILDEP-TsgmdAIS 699
Cdd:PRK13538 93 ENLRFYQRLHGPGDD---EALWEALAQVGLAGFEDVPVRQLSAGQQRR----VALarlwLTRAPLWILDEPfT----AID 161
|
170 180
....*....|....*....|....*.
gi 116734710 700 RRAIWDLLQR--QKSDR--TIVLTTH 721
Cdd:PRK13538 162 KQGVARLEALlaQHAEQggMVILTTH 187
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
538-741 |
4.95e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.21 E-value: 4.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 538 VFRVGN---KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--QDMVQIRKSLGLCP 612
Cdd:PRK09700 265 VFEVRNvtsRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 613 QH---DILFDNLTVAEHLYFYAQLK--------GL----SRQKCPEEVKQMLHIigledKWNSRSRF---LSGGMRRKLS 674
Cdd:PRK09700 345 ESrrdNGFFPNFSIAQNMAISRSLKdggykgamGLfhevDEQRTAENQRELLAL-----KCHSVNQNiteLSGGNQQKVL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 675 IGIALIAGSKVLILDEPTSGMDAISRRAIWDLLqRQKSD--RTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM-RQLADdgKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1391-1604 |
5.35e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 77.44 E-value: 5.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1391 EQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRIGYC---P--Q 1463
Cdd:PRK13633 18 EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENLWDIRNKAGMVfqnPdnQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1464 FDALL---DHMTGREMLvmyarlrGIPERHIGACVENTLRGLLL---EPHANKLVrtySGGNKRKLSTGIALIGEPAVIF 1537
Cdd:PRK13633 98 IVATIveeDVAFGPENL-------GIPPEEIRERVDESLKKVGMyeyRRHAPHLL---SGGQKQRVAIAGILAMRPECII 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECeALCTRLAIMVQGQFKCLGSPQHLKSK 1604
Cdd:PRK13633 168 FDEPTAMLDPSGRREVVNTIKElNKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
548-734 |
5.63e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 76.74 E-value: 5.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTL---SMLTGLFPP--TSGRAYISGYEISQ---DMVQIRKSLGLCPQHDILFD 619
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLIPGfrVEGKVTFHGKNLYApdvDPVEVRRRIGMVFQKPNPFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 620 NlTVAEHLYFYAQLKGLsRQKCPEEVKQMLHIIGL----EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:PRK14243 105 K-SIYDNIAYGARINGY-KGDMDELVERSLRQAALwdevKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 696 DAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIA 734
Cdd:PRK14243 183 DPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
559-739 |
6.62e-15 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 80.92 E-value: 6.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSML-----TGLFppTSGRAYISGYEISQdmvQIRKSLGLCPQHDILFDNLTVAEHLYFYAQL 633
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDS---SFQRSIGYVQQQDLHLPTSTVRESLRFSAYL 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 634 ---KGLSRQKCPEEVKQMLHIIGLEDKWNS----RSRFLSGGMRRKLSIGIALIAGSKVLI-LDEPTSGMDAISRRAIWD 705
Cdd:TIGR00956 864 rqpKSVSKSEKMEYVEEVIKLLEMESYADAvvgvPGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICK 943
|
170 180 190
....*....|....*....|....*....|....*...
gi 116734710 706 LLqRQKSD--RTIVLTTHfMDEADLLG--DRIAIMAKG 739
Cdd:TIGR00956 944 LM-RKLADhgQAILCTIH-QPSAILFEefDRLLLLQKG 979
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
524-741 |
6.67e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 79.66 E-value: 6.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 524 EDLVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS----Q 599
Cdd:PRK10762 243 EDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVtrspQ 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 600 D-----MVQI---RKSLGLcpqhdILfdNLTVAEHLYFYAqLKGLSRQ----KCPEEVKQMLHIIGLED-KWNSRSR--- 663
Cdd:PRK10762 323 DglangIVYIsedRKRDGL-----VL--GMSVKENMSLTA-LRYFSRAggslKHADEQQAVSDFIRLFNiKTPSMEQaig 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 664 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEadLLG--DRIAIMAKGE 740
Cdd:PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEgLSIILVSSEMPE--VLGmsDRILVMHEGR 472
|
.
gi 116734710 741 L 741
Cdd:PRK10762 473 I 473
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1397-1633 |
7.08e-15 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 80.55 E-value: 7.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFV-GG------HRISsdvgkVRQRIGYCPQfdalld 1469
Cdd:NF033858 15 VALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVlGGdmadarHRRA-----VCPRIAYMPQ------ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1470 hmtG-----------REMLVMYARLRGIP----ERHIGACVENTlrGLL--LEPHANKLvrtySGGNKRKLSTGIALIGE 1532
Cdd:NF033858 84 ---GlgknlyptlsvFENLDFFGRLFGQDaaerRRRIDELLRAT--GLApfADRPAGKL----SGGMKQKLGLCCALIHD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVA--RARESGKAIIITSHSMEECEAlCTRLAIMVQGQFKCLGSPQHLKSKFGSgys 1610
Cdd:NF033858 155 PDLLILDEPTTGVDPLSRRQFWELIDriRAERPGMSVLVATAYMEEAER-FDWLVAMDAGRVLATGTPAELLARTGA--- 230
|
250 260
....*....|....*....|...
gi 116734710 1611 lrakvqsegqqEALEEfkAFVDL 1633
Cdd:NF033858 231 -----------DTLEA--AFIAL 240
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
546-739 |
7.89e-15 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 75.38 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTG--LFPPTSGRAYISGYEISQDmvqirkslglcpqhdilfdnLTV 623
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVAGCVDVPDNQFGRE--------------------ASL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYfyaqlkglsRQKCPEEVKQMLHIIGLEDKWNSRSRF--LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA---- 697
Cdd:COG2401 103 IDAIG---------RKGDFKDAVELLNAVGLSDAVLWLRRFkeLSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRqtak 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116734710 698 ISRRAIWDLLQRQKsdRTIVLTTHFMD-EADLLGDRIAIMAKG 739
Cdd:COG2401 174 RVARNLQKLARRAG--ITLVVATHHYDvIDDLQPDLLIFVGYG 214
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
539-752 |
9.03e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 76.36 E-value: 9.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 539 FRVgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDIL 617
Cdd:PRK10575 19 FRV--PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwSSKAFARKVAYLPQQLPA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 FDNLTVAEHL----YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:PRK10575 97 AEGMTVRELVaigrYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 694 GMDAISRRAIWDLLQRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQ 752
Cdd:PRK10575 177 ALDIAHQVDVLALVHRLSQERglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1402-1599 |
9.84e-15 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 77.82 E-value: 9.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHrissDVGKVRQR---IGYCPQFDALLDHMT------ 1472
Cdd:PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT----DVSRLHARdrkVGFVFQHYALFRHMTvfdnia 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1473 -GREMLVMYARlrgiPERH-IGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVAR 1550
Cdd:PRK10851 97 fGLTVLPRRER----PNAAaIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1551 RLLWDTVARARESGK--AIIITsHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK10851 173 KELRRWLRQLHEELKftSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1383-1638 |
1.16e-14 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 77.53 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRV-PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----DVGKVRQR 1457
Cdd:PRK11153 4 LKNISKVFPQGGrTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAlsekELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGS-------PQH-LKSKFGS- 1607
Cdd:PRK11153 164 CDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshPKHpLTREFIQs 243
|
250 260 270
....*....|....*....|....*....|...
gi 116734710 1608 --GYSLRAKVQSEGQQEALEEFKAFVDLTFPGS 1638
Cdd:PRK11153 244 tlHLDLPEDYLARLQAEPTTGSGPLLRLEFTGE 276
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
530-758 |
1.84e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 73.72 E-value: 1.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGlFP---PTSGRAYISGYEISQDMVQIR- 605
Cdd:cd03217 1 LEIKDLH--VSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDITDLPPEERa 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 -KSLGLCPQHDILFDNLTVAEHLyfyaqlkglsrqkcpeevkqmlhiigledkwnsrsRFL----SGGMRRKLSIGIALI 680
Cdd:cd03217 76 rLGIFLAFQYPPEIPGVKNADFL-----------------------------------RYVnegfSGGEKKRNEILQLLL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 681 AGSKVLILDEPTSGMDAISRRAIWDLLQRQKS-DRTIVLTTHFMDEADLL-GDRIAIMAKGELQCCGSSLFLKQKYGAGY 758
Cdd:cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREeGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1381-1591 |
2.10e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 75.12 E-value: 2.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGG--------HRISSD 1450
Cdd:COG1101 2 LELKNLSKTFNPGTVNekRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGkdvtklpeYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1451 VGKVRQ--RIGYCPqfdalldHMTGREMLVMyARLRGIPeRHIGACVENTLR----------GLLLEPHANKLVRTYSGG 1518
Cdd:COG1101 82 IGRVFQdpMMGTAP-------SMTIEENLAL-AYRRGKR-RGLRRGLTKKRRelfrellatlGLGLENRLDTKVGLLSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1519 NKRKLSTGIALIGEPAVIFLDEPSTGMDP-VARRLLWDTVARARESG-KAIIITsHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG1101 153 QRQALSLLMATLTKPKLLLLDEHTAALDPkTAALVLELTEKIVEENNlTTLMVT-HNMEQALDYGNRLIMMHEGR 226
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1381-1604 |
2.39e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 75.44 E-value: 2.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-----DVGK 1453
Cdd:PRK13634 3 ITFQKVEHRYQYKTPFerRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAgkknkKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1454 VRQRIGYCPQF--------------------------DALLdhmTGREMLvmyaRLRGIPERhigacventlrglLLEPH 1507
Cdd:PRK13634 83 LRKKVGIVFQFpehqlfeetvekdicfgpmnfgvseeDAKQ---KAREMI----ELVGLPEE-------------LLARS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1508 ANKLvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAI 1586
Cdd:PRK13634 143 PFEL----SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVV 218
|
250
....*....|....*...
gi 116734710 1587 MVQGQFKCLGSPQHLKSK 1604
Cdd:PRK13634 219 MHKGTVFLQGTPREIFAD 236
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
559-721 |
2.90e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 78.00 E-value: 2.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSMLTGLFPPTS--GRAYISGYEISQdmvQIRKSLGLCPQHDILFDNLTVAEHLYFYAQL--- 633
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVTQDDILYPHLTVRETLVFCSLLrlp 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 634 KGLSRQ---KCPEEVKQMLHIIGLEDK--WNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR-RAIWDLL 707
Cdd:PLN03211 171 KSLTKQekiLVAESVISELGLTKCENTiiGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAyRLVLTLG 250
|
170
....*....|....
gi 116734710 708 QRQKSDRTIVLTTH 721
Cdd:PLN03211 251 SLAQKGKTIVTSMH 264
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1375-1591 |
3.18e-14 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 74.84 E-value: 3.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1375 SLLHtpliIKELSKVYE--------QRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHR 1446
Cdd:TIGR02769 1 SLLE----VRDVTHTYRtgglfgakQRAPVL--TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1447 ISSDVGKVRQRIGYCPQ------FDALLDHMTGREMLvmyarlrGIPERHIG--------ACVENTLRGLLLEP-HANKL 1511
Cdd:TIGR02769 75 LYQLDRKQRRAFRRDVQlvfqdsPSAVNPRMTVRQII-------GEPLRHLTsldeseqkARIAELLDMVGLRSeDADKL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1512 VRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPV----ARRLLwdtVARARESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:TIGR02769 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVlqavILELL---RKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224
|
....
gi 116734710 1588 VQGQ 1591
Cdd:TIGR02769 225 DKGQ 228
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
544-721 |
4.54e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 72.68 E-value: 4.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 544 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTV 623
Cdd:PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYFyaqlkGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAI 703
Cdd:PRK13540 92 RENCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
|
170
....*....|....*....
gi 116734710 704 WDLLQ-RQKSDRTIVLTTH 721
Cdd:PRK13540 167 ITKIQeHRAKGGAVLLTSH 185
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1381-1572 |
5.25e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 70.94 E-value: 5.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrissdvgkvRQRIGY 1460
Cdd:cd03221 1 IELENLSKTYGGK-LLL--KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----------TVKIGY 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CPQFdalldhmtgremlvmyarlrgiperhigacventlrglllephanklvrtySGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:cd03221 68 FEQL---------------------------------------------------SGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190
....*....|....*....|....*....|..
gi 116734710 1541 PSTGMDPVARRLLWDTVaraRESGKAIIITSH 1572
Cdd:cd03221 97 PTNHLDLESIEALEEAL---KEYPGTVILVSH 125
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1397-1613 |
5.27e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 74.28 E-value: 5.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD-VGKVRQRIGYCPQF-DALLDHMTGR 1474
Cdd:PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEEtVWDVRRQVGMVFQNpDNQFVGATVQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLW 1554
Cdd:PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1555 DTVARARESGKAIIIT-SHSMEECeALCTRLAIMVQGQFKCLGSPQHLkskFGSGYSLRA 1613
Cdd:PRK13635 181 ETVRQLKEQKGITVLSiTHDLDEA-AQADRVIVMNKGEILEEGTPEEI---FKSGHMLQE 236
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1399-1599 |
5.44e-14 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 76.03 E-value: 5.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDALLDHMTGREML 1477
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAlSARAASRRVASVPQDTSLSFEFDVRQVV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VM-----YARLRGIPERHIGAcVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD-PVARR 1551
Cdd:PRK09536 99 EMgrtphRSRFDTWTETDRAA-VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDiNHQVR 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 116734710 1552 LLwDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK09536 178 TL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1391-1572 |
5.70e-14 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 77.84 E-value: 5.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1391 EQRVPLLAVDRLslaVQKGECFGLLGFNGAGKTTTFKMLTGEES---LTSGDAFVGGHRISSdvgKVRQRIGYCPQFDAL 1467
Cdd:TIGR00956 774 EKRVILNNVDGW---VKPGTLTALMGASGAGKTTLLNVLAERVTtgvITGGDRLVNGRPLDS---SFQRSIGYVQQQDLH 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1468 LDHMTGREMLVMYARLR---GIPERHIGACVENTLRGLLLEPHANKLVRTYSGG----NKRKLSTGIALIGEPA-VIFLD 1539
Cdd:TIGR00956 848 LPTSTVRESLRFSAYLRqpkSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGlnveQRKRLTIGVELVAKPKlLLFLD 927
|
170 180 190
....*....|....*....|....*....|...
gi 116734710 1540 EPSTGMDPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:TIGR00956 928 EPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1384-1612 |
6.76e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 74.05 E-value: 6.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD-----VGKVRQ 1456
Cdd:PRK13646 6 DNVSYTYQKGTPYehQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkdkyIRPVRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQF--DALLDHMTGREMLVMYARLRGIPERhigacVENTLRGLLLEPHANKLVRT-----YSGGNKRKLSTGIAL 1529
Cdd:PRK13646 86 RIGMVFQFpeSQLFEDTVEREIIFGPKNFKMNLDE-----VKNYAHRLLMDLGFSRDVMSqspfqMSGGQMRKIAIVSIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLkskFGSG 1608
Cdd:PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL---FKDK 237
|
....
gi 116734710 1609 YSLR 1612
Cdd:PRK13646 238 KKLA 241
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
526-740 |
7.58e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 73.53 E-value: 7.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 526 LVAGIKIKHLSKVFRVgnkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTS-----GRAYISG---YEI 597
Cdd:PRK14258 4 LIPAIKVNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNqniYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 598 SQDMVQIRKSLGLCPQHDILFDnLTVAEHLYFYAQLKG--------------LSRQKCPEEVKQMLHIIGLEdkwnsrsr 663
Cdd:PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwrpkleiddivesaLKDADLWDEIKHKIHKSALD-------- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 664 fLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK14258 151 -LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQslRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1403-1591 |
7.69e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 76.10 E-value: 7.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1403 SLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRIGYCPQ---FDALLDHMTGREML 1477
Cdd:PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDirSPRDAIRAGIMLCPEdrkAEGIIPVHSVADNI 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGIP--------------ERHIGACVENTlrglllePHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPST 1543
Cdd:PRK11288 353 NISARRHHLRagclinnrweaenaDRFIRSLNIKT-------PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 116734710 1544 GMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK11288 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
549-742 |
8.49e-14 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 73.46 E-value: 8.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS--------------QDMVQIRKSLGLCPQH 614
Cdd:PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadkNQLRLLRTRLTMVFQH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 615 DILFDNLTVAEH-LYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKwnSRSRF---LSGGMRRKLSIGIALIAGSKVLILDE 690
Cdd:PRK10619 101 FNLWSHMTVLENvMEAPIQVLGLSKQEARERAVKYLAKVGIDER--AQGKYpvhLSGGQQQRVSIARALAMEPEVLLFDE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 691 PTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:PRK10619 179 PTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
520-746 |
1.12e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 76.05 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 520 EAEPEDLVAgikIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSG----------- 588
Cdd:PRK10261 6 ELDARDVLA---VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGlvqcdkmllrr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 589 --RAYISGYEISQ-DMVQIRKS-LGLCPQHDILFDN--LTVAEHLYFYAQL-KGLSRQKCPEEVKQMLHIIGLEDKWNSR 661
Cdd:PRK10261 83 rsRQVIELSEQSAaQMRHVRGAdMAMIFQEPMTSLNpvFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTIL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 662 SRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIM 736
Cdd:PRK10261 163 SRYphqLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKvlQKEMSMGVIFITHDMGVVAEIADRVLVM 242
|
250
....*....|
gi 116734710 737 AKGELQCCGS 746
Cdd:PRK10261 243 YQGEAVETGS 252
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1379-1596 |
1.30e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 75.59 E-value: 1.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEqrvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGG-------HRISSD 1450
Cdd:PRK09700 3 TPYIsMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinynkldHKLAAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1451 VGkvrqrIGYCPQFDALLDHMTGREMLVM----YARLRGIP-----ERHIGACVENTLRGLLLEPhaNKLVRTYSGGNKR 1521
Cdd:PRK09700 80 LG-----IGIIYQELSVIDELTVLENLYIgrhlTKKVCGVNiidwrEMRVRAAMMLLRVGLKVDL--DEKVANLSISHKQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1522 KLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLG 1596
Cdd:PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1399-1599 |
1.35e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 72.50 E-value: 1.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDALLDHMTGREML 1477
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwSPAELARRRAVLPQHSSLSFPFTVEEVV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNK------RKLSTGIALIGEPAVIFLDEPSTGMDP---- 1547
Cdd:PRK13548 98 AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQqrvqlaRVLAQLWEPDGPPRWLLLDEPTSALDLahqh 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1548 ----VARRLlwdtvarARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK13548 178 hvlrLARQL-------AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1397-1572 |
1.38e-13 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 70.80 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDhmtgrem 1476
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 lvmyarlrgiperhigacveNTLRglllephaNKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556
Cdd:cd03247 89 --------------------TTLR--------NNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
|
170
....*....|....*.
gi 116734710 1557 VARAREsGKAIIITSH 1572
Cdd:cd03247 141 IFEVLK-DKTLIWITH 155
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1352-1604 |
1.44e-13 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 75.56 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1352 MPVLPEDQDVADERTRILAPSPDSllhtPLIIKELSKVYEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG 1431
Cdd:COG4988 312 FALLDAPEPAAPAGTAPLPAAGPP----SIELEDVSFSYPGGRPAL--DGLSLTIPPGERVALVGPSGAGKSTLLNLLLG 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1432 EESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALLDHMTGREMLVMYArlRGIPERHIGACVENTlrglllepHANK 1510
Cdd:COG4988 386 FLPPYSGSILINGVDLSDlDPASWRRQIAWVPQ-NPYLFAGTIRENLRLGR--PDASDEELEAALEAA--------GLDE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1511 LVRTY---------------SGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAREsGKAIIITSHSME 1575
Cdd:COG4988 455 FVAALpdgldtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILITHRLA 533
|
250 260
....*....|....*....|....*....
gi 116734710 1576 ECeALCTRLAIMVQGQFKCLGSPQHLKSK 1604
Cdd:COG4988 534 LL-AQADRILVLDDGRIVEQGTHEELLAK 561
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
546-741 |
1.59e-13 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 72.56 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRA-YISGYEISQDMVQI---------RKSLGLCPQHD 615
Cdd:TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAtYIMRSGAELELYQLseaerrrlmRTEWGFVHQNP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 616 IlfDNL--------TVAEHLY-----FYAQLKGlSRQKCPEEVKQMLhiigleDKWNSRSRFLSGGMRRKLSIGIALIAG 682
Cdd:TIGR02323 96 R--DGLrmrvsagaNIGERLMaigarHYGNIRA-TAQDWLEEVEIDP------TRIDDLPRAFSGGMQQRLQIARNLVTR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 683 SKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTI--VLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLavIIVTHDLGVARLLAQRLLVMQQGRV 227
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1402-1601 |
2.20e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 72.13 E-value: 2.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQR-IGYCPQFDALLDHMTGREMLVM- 1479
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARkVAYLPQQLPAAEGMTVRELVAIg 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1480 -------YARLrGIPERhigACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRL 1552
Cdd:PRK10575 110 rypwhgaLGRF-GAADR---EKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 1553 LWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK10575 186 VLALVHRlSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
541-708 |
2.47e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 71.94 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 541 VGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFD 619
Cdd:PRK10253 15 LGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHyASKEVARRIGLLAQNATTPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 620 NLTVAEHL----YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:PRK10253 95 DITVQELVargrYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
|
170
....*....|...
gi 116734710 696 DaISRRAiwDLLQ 708
Cdd:PRK10253 175 D-ISHQI--DLLE 184
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1383-1603 |
2.79e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 71.94 E-value: 2.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRIGY 1460
Cdd:PRK13644 4 LENVSYSYPDGTP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1461 CpqFDALLDHMTGR---EMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:PRK13644 82 V--FQNPETQFVGRtveEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEAlCTRLAIMVQGQFKCLGSPQHLKS 1603
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLS 224
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
530-721 |
3.16e-13 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.96 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----DMVQIR 605
Cdd:PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdeeARAKLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 -KSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK10584 87 aKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 685 VLILDEPTSGMDAISRRAIWDLLQRQKSDR--TIVLTTH 721
Cdd:PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHgtTLILVTH 205
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1398-1592 |
3.50e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 74.18 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHR---------ISSDVGKVRQRIGYCPQF---- 1464
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEmrfasttaaLAAGVAIIYQELHLVPEMtvae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1465 DALLDHMTGREMLVMYARLRgipeRHIGACVENTlrGLLLEPHANklVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTG 1544
Cdd:PRK11288 99 NLYLGQLPHKGGIVNRRLLN----YEAREQLEHL--GVDIDPDTP--LKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 116734710 1545 MDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:PRK11288 171 LSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
553-739 |
4.84e-13 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 70.38 E-value: 4.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 553 NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQI---RKSLGLCPQHDILFDNLTVAEH--L 627
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG----QDHTTTppsRRPVSMLFQENNLFSHLTVAQNigL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 628 YFYAQLKGLSRQKcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL 707
Cdd:PRK10771 95 GLNPGLKLNAAQR--EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV 172
|
170 180 190
....*....|....*....|....*....|....
gi 116734710 708 QRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK10771 173 SQVCQERqlTLLMVSHSLEDAARIAPRSLVVADG 206
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
530-760 |
5.17e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.98 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQI-RKSL 608
Cdd:PRK10790 341 IDIDNVSFAYR---DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVlRQGV 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQH-----DILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHiiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGS 683
Cdd:PRK10790 418 AMVQQDpvvlaDTFLANVTLGRDISEEQVWQALETVQLAELARSLPD--GLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 684 KVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMD---EAdllgDRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Cdd:PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLStivEA----DTILVLHRGQAVEQGTHQQLLAAQGRYWQM 571
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
530-736 |
6.19e-13 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 72.07 E-value: 6.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVG----NKDRAAVR---DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS---- 598
Cdd:COG4608 8 LEVRDLKKHFPVRgglfGRTVGVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITglsg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 599 QDMVQIRKSLglcpQhdILFDN--------LTVAEHLYFYAQLKGL-SRQKCPEEVKQMLHIIGLEDkwNSRSRF---LS 666
Cdd:COG4608 88 RELRPLRRRM----Q--MVFQDpyaslnprMTVGDIIAEPLRIHGLaSKAERRERVAELLELVGLRP--EHADRYpheFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 667 GGMRRKlsIGIA--LIAGSKVLILDEPTSGMDaISRRA-IWDLLQ--RQKSDRTIVLTTHfmdeaDL-----LGDRIAIM 736
Cdd:COG4608 160 GGQRQR--IGIAraLALNPKLIVCDEPVSALD-VSIQAqVLNLLEdlQDELGLTYLFISH-----DLsvvrhISDRVAVM 231
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1381-1579 |
6.34e-13 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 69.43 E-value: 6.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSkVYEQRVPLLAvdRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESL---TSGDAFVGGHRISSdvGKVRQR 1457
Cdd:COG4136 2 LSLENLT-ITLGGRPLLA--PLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTA--LPAEQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 -IGYCPQFDALLDHMTGREMLvMYARLRGIP--ERHigACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:COG4136 77 rIGILFQDDLLFPHLSVGENL-AFALPPTIGraQRR--ARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPR 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTV-ARARESGKAIIITSHSMEECEA 1579
Cdd:COG4136 154 ALLLDEPFSKLDAALRAQFREFVfEQIRQRGIPALLVTHDEEDAPA 199
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1392-1572 |
6.37e-13 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 69.31 E-value: 6.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1392 QRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHM 1471
Cdd:TIGR01189 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1472 TGREMLVMYARLRGIPERHIgacvENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARR 1551
Cdd:TIGR01189 89 SALENLHFWAAIHGGAQRTI----EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVA 164
|
170 180
....*....|....*....|.
gi 116734710 1552 LLWDTVARARESGKAIIITSH 1572
Cdd:TIGR01189 165 LLAGLLRAHLARGGIVLLTTH 185
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1316-1573 |
6.51e-13 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 73.55 E-value: 6.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1316 AYLILLFLIETNLLQRLRGILCALRRRRT----LTELyTRMPVLPEDQDVAdertrilAPSPDSLLHTPLIIKELSKVYE 1391
Cdd:TIGR02868 274 AVLVLLPLAAFEAFAALPAAAQQLTRVRAaaerIVEV-LDAAGPVAEGSAP-------AAGAVGLGKPTLELRDLSAGYP 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1392 QRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALLDH 1470
Cdd:TIGR02868 346 GAPPVL--DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVCAQ-DAHLFD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MTGREMLvMYARLRGIPERhigacVENTLRGLLLEPHANKLV-----------RTYSGGNKRKLSTGIALIGEPAVIFLD 1539
Cdd:TIGR02868 423 TTVRENL-RLARPDATDEE-----LWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLALARALLADAPILLLD 496
|
250 260 270
....*....|....*....|....*....|....*
gi 116734710 1540 EPSTGMDP-VARRLLWDTvaRARESGKAIIITSHS 1573
Cdd:TIGR02868 497 EPTEHLDAeTADELLEDL--LAALSGRTVVLITHH 529
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1399-1590 |
6.61e-13 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 70.19 E-value: 6.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDvGKVRQRIGycpQFDALLDHMTGRE--M 1476
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-GPDRMVVF---QNYSLLPWLTVREniA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556
Cdd:TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170 180 190
....*....|....*....|....*....|....*
gi 116734710 1557 VAR-ARESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:TIGR01184 157 LMQiWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
534-725 |
7.05e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 69.74 E-value: 7.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 534 HLSKV-FRVGnkDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLC 611
Cdd:PRK10247 9 QLQNVgYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 PQHDILFDNlTVAEHLYFYAQLkglsRQKCPEEVKQM--LHIIGL-EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLIL 688
Cdd:PRK10247 87 AQTPTLFGD-TVYDNLIFPWQI----RNQQPDPAIFLddLERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 689 DEPTSGMDAISRRAIWDLLQRQKSDRTI-VL-TTHFMDE 725
Cdd:PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIaVLwVTHDKDE 200
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
532-739 |
7.85e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 73.20 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKT-TTLSMLTGLfpPTSGRAYISGyEI-----------SQ 599
Cdd:PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLL--PSPPVVYPSG-DIrfhgesllhasEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 600 DMVQIRKS----------LGLCPQHdilfdnlTVAEHLYFYAQL-KGLSRQKCPEEVKQMLHIIGLEDKWNSRSRF---L 665
Cdd:PRK15134 85 TLRGVRGNkiamifqepmVSLNPLH-------TLEKQLYEVLSLhRGMRREAARGEILNCLDRVGIRQAAKRLTDYphqL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 666 SGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRelQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1413-1601 |
8.55e-13 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 71.67 E-value: 8.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1413 GLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV-----RQRIGYCPQFDALLDHMTGREMLvMYARLR-GI 1486
Cdd:COG4148 29 ALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIflpphRRRIGYVFQEARLFPHLSVRGNL-LYGRKRaPR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1487 PERHIG--ACVEntlrgLL-LEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARE 1562
Cdd:COG4148 108 AERRISfdEVVE-----LLgIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERlRDE 182
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 1563 SGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:COG4148 183 LDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1398-1597 |
8.65e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 70.15 E-value: 8.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGG--------HRIssdvgkVRQRIGYCPQFDALLD 1469
Cdd:COG4674 25 ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGtdltgldeHEI------ARLGIGRKFQKPTVFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1470 HMTGREML------------VMYARLRGIPERHIgacvENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:COG4674 99 ELTVFENLelalkgdrgvfaSLFARLTAEERDRI----EEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1538 LDEPSTGMDPVARRL---LWDTVARAResgkAIIITSHSMEECEALCTRLAIMVQGQFKCLGS 1597
Cdd:COG4674 175 LDEPVAGMTDAETERtaeLLKSLAGKH----SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1398-1601 |
8.69e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 70.60 E-value: 8.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVGKVRQRIGYCPQFDALLDHMTGREM 1476
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITkENIREVRKFVGLVFQNPDDQIFSPTVEQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLR-GIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWD 1555
Cdd:PRK13652 99 DIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 116734710 1556 TVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK13652 179 FLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
559-721 |
8.98e-13 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 73.73 E-value: 8.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSML----TGLFppTSGRAYISGYEISQDMVQiRKSlGLCPQHDILFDNLTVAEHLYFYAQLK 634
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLagrkTGGY--IEGDIRISGFPKKQETFA-RIS-GYCEQNDIHSPQVTVRESLIYSAFLR 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 635 gLSRQKCPEE----VKQMLHIIGLEDKWNSRSRF-----LSGGMRRKLSIGIALIAGSKVLILDEPTSGMD----AISRR 701
Cdd:PLN03140 982 -LPKEVSKEEkmmfVDEVMELVELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDaraaAIVMR 1060
|
170 180
....*....|....*....|..
gi 116734710 702 AIwdllqRQKSD--RTIVLTTH 721
Cdd:PLN03140 1061 TV-----RNTVDtgRTVVCTIH 1077
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1385-1591 |
1.07e-12 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 69.06 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1385 ELSKV--YEQRVPLlavdRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrisSDVGKV---RQRIG 1459
Cdd:cd03298 2 RLDKIrfSYGEQPM----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING----VDVTAAppaDRPVS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQFDALLDHMTGREM--LVMYARLRGIPERHigACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:cd03298 74 MLFQENNLFAHLTVEQNvgLGLSPGLKLTAEDR--QAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:cd03298 152 LDEPFAALDPALRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1381-1598 |
1.12e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 70.42 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV---- 1454
Cdd:PRK13645 7 IILDNVSYTYAKKTPFefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkevk 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 --RQRIGYCPQFDALLDHMTGREMLVMYARLrgiperHIGACVENTLRGL--------LLEPHANKLVRTYSGGNKRKLS 1524
Cdd:PRK13645 87 rlRKEIGLVFQFPEYQLFQETIEKDIAFGPV------NLGENKQEAYKKVpellklvqLPEDYVKRSPFELSGGQKRRVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1525 TG--IALIGEPAVifLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13645 161 LAgiIAMDGNTLV--LDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
544-746 |
1.35e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 70.04 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 544 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS---QDMVQIRKSLGLC---PQHDIL 617
Cdd:PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDyskRGLLALRQQVATVfqdPEQQIF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 618 FDNltVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA 697
Cdd:PRK13638 92 YTD--IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 698 ISRRAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13638 170 AGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
528-739 |
1.48e-12 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 71.03 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFRVGNkdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQdmvqirks 607
Cdd:PRK11650 2 AGLKLQAVRKSYDGKT---QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 lgLCP-QHDI--LFDN------LTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIA 678
Cdd:PRK11650 71 --LEPaDRDIamVFQNyalyphMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 679 LIAGSKVLILDEPTSGMDAISRRA----IWDLLQRQKSdrTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQmrleIQRLHRRLKT--TSLYVTHDQVEAMTLADRVVVMNGG 211
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1403-1590 |
1.61e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 69.91 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1403 SLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKvrQRIGYCPQ-------FDALLDH--MTG 1473
Cdd:PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK--NLVAYVPQseevdwsFPVLVEDvvMMG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARlrgIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLL 1553
Cdd:PRK15056 105 RYGHMGWLR---RAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
|
170 180 190
....*....|....*....|....*....|....*..
gi 116734710 1554 WDTVARARESGKAIIITSHSMEECEALCTrLAIMVQG 1590
Cdd:PRK15056 182 ISLLRELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKG 217
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
530-699 |
1.72e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 69.79 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSkvFRVGNkdRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI----SQDMVQIR 605
Cdd:PRK11831 8 VDMRGVS--FTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYF----YAQLkglsrqkcPEE-----VKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIG 676
Cdd:PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYplreHTQL--------PAPllhstVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155
|
170 180
....*....|....*....|...
gi 116734710 677 IALIAGSKVLILDEPTSGMDAIS 699
Cdd:PRK11831 156 RAIALEPDLIMFDEPFVGQDPIT 178
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
530-741 |
1.72e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 69.43 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFR--VGNKDR---AAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI------- 597
Cdd:PRK15112 5 LEVRNLSKTFRyrTGWFRRqtvEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLhfgdysy 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 598 -SQDMVQIRK--SLGLCPQHDIlfdNLTVAEHLYFYAQLKGLSRQKcpeEVKQMLHIIGL-EDKWNSRSRFLSGGMRRKL 673
Cdd:PRK15112 85 rSQRIRMIFQdpSTSLNPRQRI---SQILDFPLRLNTDLEPEQREK---QIIETLRQVGLlPDHASYYPHMLAPGQKQRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 674 SIGIALIAGSKVLILDEPTSGMDAISRRAIWDL---LQRQKSDRTIVLTTHF--MDEadlLGDRIAIMAKGEL 741
Cdd:PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLmleLQEKQGISYIYVTQHLgmMKH---ISDQVLVMHQGEV 228
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
550-740 |
2.40e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 67.88 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 550 RDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGrayisgyeisqdMVQIRKSLGLCPQHDILFdNLTVAEHLYF 629
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG------------SVSVPGSIAYVSQEPWIQ-NGTIRENILF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 630 YAQLKglsrqkcPEEVKQMLH-----------------IIGledkwnSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPT 692
Cdd:cd03250 89 GKPFD-------EERYEKVIKacalepdleilpdgdltEIG------EKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 116734710 693 SGMDAISRRAIWD--LLQRQKSDRTIVLTTH---FMDEAdllgDRIAIMAKGE 740
Cdd:cd03250 156 SAVDAHVGRHIFEncILGLLLNNKTRILVTHqlqLLPHA----DQIVVLDNGR 204
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1399-1591 |
2.43e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 71.35 E-value: 2.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS--SDVGKVRQRIGYC----------PQFDA 1466
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMAYItesrrdngffPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDHMTGREM-LVMYARLRGIPERHIGACVENTLRGLL-LEPHA-NKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPST 1543
Cdd:PRK09700 359 AQNMAISRSLkDGGYKGAMGLFHEVDEQRTAENQRELLaLKCHSvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 116734710 1544 GMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK09700 439 GIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1384-1598 |
2.86e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 69.38 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPLL--AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-----DVGKVRQ 1456
Cdd:PRK13643 5 EKVNYTYQPNSPFAsrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSStskqkEIKPVRK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQF-DALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGL-LLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:PRK13643 85 KVGVVFQFpESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVgLADEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1383-1604 |
3.45e-12 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 68.24 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLLAVDrlsLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD---------VGK 1453
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGID---LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTArslsqqkglIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1454 VRQRIGYCPQFDALLDHMTGREMLVM-YARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGE 1532
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEgPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRL------AIMVQGQFKCL-GSPQHLKSK 1604
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAifmdqgRIVEQGPAKALfADPQQPRTR 241
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
530-742 |
3.70e-12 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 68.69 E-value: 3.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRV--GNKDRA--------------AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYIS 593
Cdd:PRK13546 5 VNIKNVTKEYRIyrTNKERMkdalipkhknktffALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 594 GyeisqDMVQIRKSLGLCPQhdilfdnLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKL 673
Cdd:PRK13546 85 G-----EVSVIAISAGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 674 SIGIALIAGSKVLILDEPTS-GMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:PRK13546 153 GFSINITVNPDILVIDEALSvGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1409-1572 |
3.84e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 71.06 E-value: 3.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1409 GECFGLLGFNGAGKTTTFKMLTG--EESLTSGDAFVGGHRISSDVGKvrqRIGYCPQFDALLDHMTGREMLVMYARLR-- 1484
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGriQGNNFTGTILANNRKPTKQILK---RTGFVTQDDILYPHLTVRETLVFCSLLRlp 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1485 --------------GIPERHIGACvENTLRGlllephaNKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVAR 1550
Cdd:PLN03211 171 ksltkqekilvaesVISELGLTKC-ENTIIG-------NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
|
170 180
....*....|....*....|..
gi 116734710 1551 RLLWDTVARARESGKAIIITSH 1572
Cdd:PLN03211 243 YRLVLTLGSLAQKGKTIVTSMH 264
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1379-1599 |
4.02e-12 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 68.12 E-value: 4.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLIIKELSKVY-EQRVpllaVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV-RQ 1456
Cdd:PRK11231 1 MTLRTENLTVGYgTKRI----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQlAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQFDALLDHMTGREmLVMYAR-----LRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIG 1531
Cdd:PRK11231 77 RLALLPQHHLTPEGITVRE-LVAYGRspwlsLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1381-1590 |
5.37e-12 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 67.88 E-value: 5.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVpllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLT-----GEESLTSGDAFVGGHRISS---DVG 1452
Cdd:PRK14239 6 LQVSDLSVYYNKKK---ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmndlNPEVTITGSIVYNGHNIYSprtDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1453 KVRQRIGYCPQ----FDalldhMTGREMLVMYARLRGIPERHI-GACVENTLRGLLL------EPHANKLvrTYSGGNKR 1521
Cdd:PRK14239 83 DLRKEIGMVFQqpnpFP-----MSIYENVVYGLRLKGIKDKQVlDEAVEKSLKGASIwdevkdRLHDSAL--GLSGGQQQ 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1522 KLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITsHSMEECEALCTRLAIMVQG 1590
Cdd:PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDG 223
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1392-1599 |
5.50e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 70.55 E-value: 5.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1392 QRVPLLAvdRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQ----FD- 1465
Cdd:COG4618 343 SKRPILR--GVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGYLPQdvelFDg 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 ------ALLDHMTgREMLVMYARLRGI-------PER---HIGAcventlRGLLLephanklvrtySGGNKRKLSTGIAL 1529
Cdd:COG4618 421 tiaeniARFGDAD-PEKVVAAAKLAGVhemilrlPDGydtRIGE------GGARL-----------SGGQRQRIGLARAL 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMeecEAL--CTRLAIMVQGQFKCLGSPQ 1599
Cdd:COG4618 483 YGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP---SLLaaVDKLLVLRDGRVQAFGPRD 551
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
522-742 |
7.74e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 69.85 E-value: 7.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 522 EPEDLVAGI-KIKHLSkVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPT-SGRAYISGYE--- 596
Cdd:TIGR02633 249 EPHEIGDVIlEARNLT-CWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPvdi 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 597 ------ISQDMVQI---RKSLGLCPQ----HDIlfdNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIigledkwNSRSR 663
Cdd:TIGR02633 328 rnpaqaIRAGIAMVpedRKRHGIVPIlgvgKNI---TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-------KTASP 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 664 FL-----SGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL-QRQKSDRTIVLTTHFMDEADLLGDRIAIMA 737
Cdd:TIGR02633 398 FLpigrlSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLInQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
|
....*
gi 116734710 738 KGELQ 742
Cdd:TIGR02633 478 EGKLK 482
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
530-741 |
9.88e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 67.40 E-value: 9.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAA-----VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ----D 600
Cdd:PRK10419 4 LNVSGLSHHYAHGGLSGKHqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 MVQIRKSLGLC---------PQHDIlfdNLTVAEHLyfyAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSR-SRFLSGGMR 670
Cdd:PRK10419 84 RKAFRRDIQMVfqdsisavnPRKTV---REIIREPL---RHLLSLDKAERLARASEMLRAVDLDDSVLDKrPPQLSGGQL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 671 RKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKklQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1404-1609 |
9.91e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 68.52 E-value: 9.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1404 LAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIsSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARL 1483
Cdd:PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM-NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1484 RGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-ARE 1562
Cdd:PRK11000 103 AGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRlHKR 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1563 SGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL----KSKFGSGY 1609
Cdd:PRK11000 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGF 233
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1381-1541 |
1.01e-11 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 68.33 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS------DVGKV 1454
Cdd:PRK11650 4 LKLQAVRKSYDGKTQ--VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNElepadrDIAMV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1455 RQriGYcpqfdALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:PRK11650 82 FQ--NY-----ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154
|
....*..
gi 116734710 1535 VIFLDEP 1541
Cdd:PRK11650 155 VFLFDEP 161
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1395-1592 |
1.02e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 69.29 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVGKVRQR-IGYcpqfdalldhmt 1472
Cdd:COG3845 270 GVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITgLSPRERRRLgVAY------------ 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1473 gremlvmyarlrgIPE-RHIGACV------ENTL----------RGLLLEP-----HANKLVRTY--------------S 1516
Cdd:COG3845 338 -------------IPEdRLGRGLVpdmsvaENLIlgryrrppfsRGGFLDRkairaFAEELIEEFdvrtpgpdtparslS 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1517 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:COG3845 405 GGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
525-707 |
1.18e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 69.58 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 525 DLVagIKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISgyeisqDMVQi 604
Cdd:TIGR03719 320 DKV--IEAENLTKAF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIG------ETVK- 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 605 rksLGLCPQ-HDILFDNLTVAehlyfyaqlkglsrqkcpEEVKQMLHIIGLED-KWNSR---SRF-------------LS 666
Cdd:TIGR03719 387 ---LAYVDQsRDALDPNKTVW------------------EEISGGLDIIKLGKrEIPSRayvGRFnfkgsdqqkkvgqLS 445
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 667 GGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL 707
Cdd:TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1402-1573 |
1.20e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 65.67 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIssDVGKVRQRIGYCPQFDALLDHMTGREMLVMYA 1481
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEACHYLGHRNAMKPALTVAENLEFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1482 RLRGIPERHIGACVENTLRGLLLEPHANKLvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAR 1561
Cdd:PRK13539 99 AFLGGEELDIAAALEAVGLAPLAHLPFGYL----SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
|
170
....*....|..
gi 116734710 1562 ESGKAIIITSHS 1573
Cdd:PRK13539 175 AQGGIVIAATHI 186
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
546-721 |
1.48e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 69.94 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPpTSGRAYISGyeISQDMV---QIRKSLGLCPQHDILFDNlT 622
Cdd:TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG--VSWNSVtlqTWRKAFGVIPQKVFIFSG-T 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWN----SRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAI 698
Cdd:TIGR01271 1308 FRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDfvlvDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387
|
170 180
....*....|....*....|...
gi 116734710 699 SRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:TIGR01271 1388 TLQIIRKTLKQSFSNCTVILSEH 1410
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1406-1572 |
1.59e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 69.07 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1406 VQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDafvgghrISSDVgkvrqRIGYCPQFDALLDHMTGREMlvmyarLRG 1485
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-------VDPEL-----KISYKPQYIKPDYDGTVEDL------LRS 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1486 IPERhIGACVENT--LRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDpVARRLlwdTVAR---- 1559
Cdd:PRK13409 424 ITDD-LGSSYYKSeiIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD-VEQRL---AVAKairr 498
|
170
....*....|....
gi 116734710 1560 -ARESGKAIIITSH 1572
Cdd:PRK13409 499 iAEEREATALVVDH 512
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
548-742 |
1.66e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 68.85 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-QDMVQIRKslglcpqhdiLFDNLTVAEH 626
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTaEQPEDYRK----------LFSAVFTDFH 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 627 LyFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWN-SRSRF----LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:PRK10522 408 L-FDQLLGPEGKPANPALVEKWLERLKMAHKLElEDGRIsnlkLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 702 AIWDLL--QRQKSDRTIVLTTH---FMDEAdllgDRIAIMAKGELQ 742
Cdd:PRK10522 487 EFYQVLlpLLQEMGKTIFAISHddhYFIHA----DRLLEMRNGQLS 528
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
545-740 |
1.92e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 66.10 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRA-YISGYEISQDMVQI---------RKSLGLCPQH 614
Cdd:PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhYRMRDGQLRDLYALseaerrrllRTEWGFVHQH 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 615 --DILFDNLT----VAEHLY-----FYAQLKG-----LSRQKCPEevkqmlhiigleDKWNSRSRFLSGGMRRKLSIGIA 678
Cdd:PRK11701 98 prDGLRMQVSaggnIGERLMavgarHYGDIRAtagdwLERVEIDA------------ARIDDLPTTFSGGMQQRLQIARN 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 679 LIAGSKVLILDEPTSGMDaISRRA-IWDLLQRQKSDR--TIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK11701 166 LVTHPRLVFMDEPTGGLD-VSVQArLLDLLRGLVRELglAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1381-1572 |
2.08e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 64.86 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELS-KVYEQRVpllaVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEES--LTSGDAFVGGHRISSdvgkvrqr 1457
Cdd:cd03217 1 LEIKDLHvSVGGKEI----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKGEDITD-------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 igycpqfdalldhmtgremLVMYARLR-GI------PERHIGACVENTLRGLllephaNKlvrTYSGGNKRKLSTGIALI 1530
Cdd:cd03217 69 -------------------LPPEERARlGIflafqyPPEIPGVKNADFLRYV------NE---GFSGGEKKRNEILQLLL 120
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 1531 GEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
545-715 |
2.34e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 68.69 E-value: 2.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqDMVQ--IRKSLGLCPQHDILFdNLT 622
Cdd:COG5265 370 ERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIR-DVTQasLRAAIGIVPQDTVLF-NDT 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 623 VAEHLYfYAQLkGLSRqkcpEEVKQ-----MLH--IIGLEDKWNS----RSRFLSGGMRRKLSIGIALIAGSKVLILDEP 691
Cdd:COG5265 448 IAYNIA-YGRP-DASE----EEVEAaaraaQIHdfIESLPDGYDTrvgeRGLKLSGGEKQRVAIARTLLKNPPILIFDEA 521
|
170 180
....*....|....*....|....
gi 116734710 692 TSGMDAISRRAIWDLLQRQKSDRT 715
Cdd:COG5265 522 TSALDSRTERAIQAALREVARGRT 545
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
530-766 |
2.48e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 68.29 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGL--FPPTSGR-----------AYIS--- 593
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRiiyhvalcekcGYVErps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 594 ---------GYEISQDMV-----------QIRKSLGLCPQHDI-LFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHII 652
Cdd:TIGR03269 77 kvgepcpvcGGTLEPEEVdfwnlsdklrrRIRKRIAIMLQRTFaLYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 653 GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHFMDEADLLG 730
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDLS 236
|
250 260 270
....*....|....*....|....*....|....*.
gi 116734710 731 DRIAIMAKGELQCCGSSLFLKQKYgagyhMTLVKEP 766
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTPDEVVAVF-----MEGVSEV 267
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
530-740 |
2.76e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 67.93 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFP--PTSGRAYISGYEISQDMVQI--R 605
Cdd:TIGR02633 2 LEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKASNIRDteR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 606 KSLGLCPQHDILFDNLTVAEHLYFYAQ--LKGlSRQKCPEEV---KQMLHIIGLEDKWNSRSRF-LSGGMRRKLSIGIAL 679
Cdd:TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEitLPG-GRMAYNAMYlraKNLLRELQLDADNVTRPVGdYGGGQQQLVEIAKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDR-TIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGvACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1398-1575 |
3.28e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 65.91 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK-VRQRIGYCPQF-DALLDHMTGRE 1475
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKVGLVFQDpDDQVFSSTVWD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1476 MLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWD 1555
Cdd:PRK13647 100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179
|
170 180
....*....|....*....|
gi 116734710 1556 TVARARESGKAIIITSHSME 1575
Cdd:PRK13647 180 ILDRLHNQGKTVIVATHDVD 199
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
561-741 |
3.42e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 65.89 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 561 ITVLLGHNGAGKTTTLSMLTGLFPPTSGRAY-----ISGYEI--SQDMVQIRKSLGLCPQHDILF-----DNLTV---AE 625
Cdd:PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIfnYRDVLEFRRRVGMLFQRPNPFpmsimDNVLAgvrAH 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGLSRQKCPEevkqmlhiIGLEDKWNSR---SRF-LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:PRK14271 129 KLVPRKEFRGVAQARLTE--------VGLWDAVKDRlsdSPFrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 702 AIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK14271 201 KIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1381-1546 |
3.99e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 64.84 E-value: 3.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLLAVDR-LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR---- 1455
Cdd:PRK11629 6 LQCDNLCKRYQEGSVQTDVLHnVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKaelr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 -QRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPA 1534
Cdd:PRK11629 86 nQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170
....*....|..
gi 116734710 1535 VIFLDEPSTGMD 1546
Cdd:PRK11629 166 LVLADEPTGNLD 177
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
522-739 |
3.99e-11 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 66.27 E-value: 3.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 522 EPEDLVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-- 599
Cdd:PRK15079 10 EVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGmk 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 600 --DMVQIRKSLGLCPQHDI--LFDNLTV----AEHLY-FYAQlkgLSRQKCPEEVKQMLHIIGL-EDKWNSRSRFLSGGM 669
Cdd:PRK15079 90 ddEWRAVRSDIQMIFQDPLasLNPRMTIgeiiAEPLRtYHPK---LSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQ 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 670 RRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR-QKS-DRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK15079 167 CQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQlQREmGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
552-696 |
4.40e-11 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 64.48 E-value: 4.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 552 LNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQhdiLFDNLTVAEHLYFY 630
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRgDRSRFMAYLGHLPG---LKADLSTLENLHFL 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 631 AQLKGLSRQKCPEEVkqmLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PRK13543 107 CGLHGRRAKQMPGSA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
527-697 |
4.79e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 68.21 E-value: 4.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 527 VAGIKIKHLSKVFRVGNKDR-----AAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLT----GLFPPTSGRAYISGYEI 597
Cdd:TIGR00956 50 FPNALLKILTRGFRKLKKFRdtktfDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGITP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 598 SQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLK-------GLSRQkcpEEVKQMLHII----GLEDKWNSRS---- 662
Cdd:TIGR00956 130 EEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKtpqnrpdGVSRE---EYAKHIADVYmatyGLSHTRNTKVgndf 206
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 663 -RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA 697
Cdd:TIGR00956 207 vRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
504-747 |
4.86e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 68.27 E-value: 4.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 504 EEEDSDPEKALRNEYFEAEPEDLVagikikhlskvfrvgnkdraavRDLNLNLYEGQITVLLGHNGAGKTTTLSMLtglf 583
Cdd:PTZ00243 653 SERSAKTPKMKTDDFFELEPKVLL----------------------RDVSVSVPRGKLTVVLGATGSGKSTLLQSL---- 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 584 pptsgrayISGYEISQDMVQIRKSLGLCPQHDILFdNLTVAEHLYFY-----AQLKGLSRQkCPEEVKQMLHIIGLEDKW 658
Cdd:PTZ00243 707 --------LSQFEISEGRVWAERSIAYVPQQAWIM-NATVRGNILFFdeedaARLADAVRV-SQLEADLAQLGGGLETEI 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 659 NSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDA-ISRRAIWDLLQRQKSDRTIVLTTHfmdEADLL--GDRIAI 735
Cdd:PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAhVGERVVEECFLGALAGKTRVLATH---QVHVVprADYVVA 853
|
250
....*....|..
gi 116734710 736 MAKGELQCCGSS 747
Cdd:PTZ00243 854 LGDGRVEFSGSS 865
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
548-740 |
5.03e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 67.40 E-value: 5.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPpTSGRAYISGYEISQ----DMVQIRKSLglcpQhdILFDN--- 620
Cdd:COG4172 301 AVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGlsrrALRPLRRRM----Q--VVFQDpfg 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 -----LTV----AEHLYFYAqlKGLSRQKCPEEVKQMLHIIGLEDkwNSRSRF---LSGGMRRKLSIGIALIAGSKVLIL 688
Cdd:COG4172 374 slsprMTVgqiiAEGLRVHG--PGLSAAERRARVAEALEEVGLDP--AARHRYpheFSGGQRQRIAIARALILEPKLLVL 449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 689 DEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTHfmdeaDL-----LGDRIAIMAKGE 740
Cdd:COG4172 450 DEPTSALDVSVQAQILDLLRDlqREHGLAYLFISH-----DLavvraLAHRVMVMKDGK 503
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1406-1572 |
5.45e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 67.50 E-value: 5.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1406 VQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDafvgghrISSDVgkvrqRIGYCPQFDALLDHMTGREMLvmyarlrg 1485
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGE-------VDEDL-----KISYKPQYISPDYDGTVEEFL-------- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1486 ipERHIGACVENT------LRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDpVARRLlwdTVAR 1559
Cdd:COG1245 423 --RSANTDDFGSSyykteiIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD-VEQRL---AVAK 496
|
170
....*....|....*...
gi 116734710 1560 -----ARESGKAIIITSH 1572
Cdd:COG1245 497 airrfAENRGKTAMVVDH 514
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1398-1596 |
6.04e-11 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 64.84 E-value: 6.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrissDVGKVRQRIGycpqfdaLLDHMTGREML 1477
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAG-------LSGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1478 VMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP-STGMDPVARRLLwDT 1556
Cdd:PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVGDQTFAQKCL-DK 185
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 1557 VARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLG 1596
Cdd:PRK13546 186 IYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
548-740 |
7.21e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.57 E-value: 7.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI-------SQD--MVQIRKSLGLCPQhdilf 618
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVtfngpksSQEagIGIIHQELNLIPQ----- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 619 dnLTVAEHLY----FYAQLKGLSRQKCPEEVKQMLHIIGLedKWNSRSRF--LSGGMRRKLSIGIALIAGSKVLILDEPT 692
Cdd:PRK10762 94 --LTIAENIFlgreFVNRFGRIDWKKMYAEADKLLARLNL--RFSSDKLVgeLSIGEQQMVEIAKVLSFESKVIIMDEPT 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 693 SGMDAISRRAIWDLLQRQKS-DRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK10762 170 DALTDTETESLFRVIRELKSqGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1381-1601 |
7.74e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 64.73 E-value: 7.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD-VGKVRQRIG 1459
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEnVWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQF-DALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:PRK13642 85 MVFQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1539 DEPSTGMDPVARRLLWDTVARARESGKAIIIT-SHSMEECeALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSiTHDLDEA-ASSDRILVMKAGEIIKEAAPSEL 227
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
555-733 |
7.86e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 64.35 E-value: 7.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 555 NLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDmvqirkslglcPQHDILFDNLTVAEHLYFYAQLK 634
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQYIKADYEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 635 GLSRQKCPEEVKQMlhiiGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKS 712
Cdd:cd03237 90 YTHPYFKTEIAKPL----QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRfaENN 165
|
170 180
....*....|....*....|.
gi 116734710 713 DRTIVLTTHFMDEADLLGDRI 733
Cdd:cd03237 166 EKTAFVVEHDIIMIDYLADRL 186
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1378-1599 |
8.72e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 64.39 E-value: 8.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1378 HTPLI-IKELSKVYEQRVPLlAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVR 1455
Cdd:PRK13648 4 KNSIIvFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDdNFEKLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 QRIGYCPQ------------FD---ALLDHMtgremlvmyarlrgIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNK 1520
Cdd:PRK13648 83 KHIGIVFQnpdnqfvgsivkYDvafGLENHA--------------VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1521 RKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIIT-SHSMEECeALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISiTHDLSEA-MEADHVIVMNKGTVYKEGTPT 227
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1396-1604 |
1.13e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 64.24 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1396 LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSD-VGKVRQRIGYC---P--QFDALL- 1468
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKKIGIIfqnPdnQFIGATv 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 --DHMTGREMlvmyarlRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEpSTGM- 1545
Cdd:PRK13632 102 edDIAFGLEN-------KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE-STSMl 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 1546 DPVARRLLWDTVARARESG-KAIIITSHSMEECeALCTRLAIMVQGQFKCLGSPQH-LKSK 1604
Cdd:PRK13632 174 DPKGKREIKKIMVDLRKTRkKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEiLNNK 233
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
270-469 |
1.52e-10 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 64.72 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 270 SFTYTALTIARAVVQEKERRLKEYMRMMGLSSWLHWSAWFLLFFLFLLIAASFMtLLFCVKVKpnvavLSRSDPSLVLAF 349
Cdd:pfam12698 171 IILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLII-LLLLFGIG-----IPFGNLGLLLLL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 350 LLCFAISTISFSFMVSTFFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQLIgkfeakg 429
Cdd:pfam12698 245 FLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGLFPLEDPPSFLQWIFSIIPFFSPIDGLLRLI------- 317
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 430 MGIQWRDLLspvnvdddfcfgQVLGMLLLDSVLYGLVTWY 469
Cdd:pfam12698 318 YGDSLWEIA------------PSLIILLLFAVVLLLLALL 345
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1381-1591 |
1.54e-10 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 63.09 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS---SDVGKVRQR 1457
Cdd:COG1126 2 IEIENLHKSFGDLEVL---KGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskKDINKLRRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQ-FdALLDHMTGREMlVMYA--RLRGIPERHigacVENTLRGLL----LEPHANKLVRTYSGGNK-RklsTGIA- 1528
Cdd:COG1126 79 VGMVFQqF-NLFPHLTVLEN-VTLApiKVKKMSKAE----AEERAMELLervgLADKADAYPAQLSGGQQqR---VAIAr 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1529 -LIGEPAVIFLDEPSTGMDP--VARRLlwDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:COG1126 150 aLAMEPKVMLFDEPTSALDPelVGEVL--DVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGR 213
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1383-1599 |
1.56e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 64.00 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPL--LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-----DVGKVR 1455
Cdd:PRK13649 5 LQNVSYTYQAGTPFegRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkDIKQIR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 QRIGYCPQF-------DALLDHM----------------TGREMLvmyaRLRGIPERhigacventlrglLLEPHANKLv 1512
Cdd:PRK13649 85 KKVGLVFQFpesqlfeETVLKDVafgpqnfgvsqeeaeaLAREKL----ALVGISES-------------LFEKNPFEL- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1513 rtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:PRK13649 147 ---SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
....*..
gi 116734710 1593 KCLGSPQ 1599
Cdd:PRK13649 224 VLSGKPK 230
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1384-1599 |
1.71e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 64.08 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVYEQRVPLLA--VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVG-----KVRQ 1456
Cdd:PRK13641 6 ENVDYIYSPGTPMEKkgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGnknlkKLRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQF-DALLDHMTGREMlVMYARLR-GIPERHIGACVENTLRGL-LLEPHANKLVRTYSGGNKRKLSTGIALIGEP 1533
Cdd:PRK13641 86 KVSLVFQFpEAQLFENTVLKD-VEFGPKNfGFSEDEAKEKALKWLKKVgLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1599
Cdd:PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1381-1612 |
1.91e-10 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 63.45 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVPLLAVdrlSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS------------ 1448
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGV---SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkva 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1449 --SDVGKVRQRIGYCPQFDALLDHMT-------------------GREMLVMYARLRGIPERHIGacventlrgllleph 1507
Cdd:PRK10619 83 dkNQLRLLRTRLTMVFQHFNLWSHMTvlenvmeapiqvlglskqeARERAVKYLAKVGIDERAQG--------------- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1508 anKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIM 1587
Cdd:PRK10619 148 --KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 225
|
250 260
....*....|....*....|....*
gi 116734710 1588 VQGQFKCLGSPQHLkskFGSGYSLR 1612
Cdd:PRK10619 226 HQGKIEEEGAPEQL---FGNPQSPR 247
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
523-741 |
1.96e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 62.43 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDlvAGIKIKHLSkvFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DM 601
Cdd:cd03369 2 PEH--GEIEVENLS--VRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 602 VQIRKSLGLCPQHDILFDNlTVAEHLYFYAQLKGlsrqkcpEEVKQMLHIIGLEDKwnsrsrfLSGGMRRKLSIGIALIA 681
Cdd:cd03369 78 EDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSD-------EEIYGALRVSEGGLN-------LSQGQRQLLCLARALLK 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 682 GSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDE-ADLlgDRIAIMAKGEL 741
Cdd:cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTiIDY--DKILVMDAGEV 201
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
551-776 |
2.45e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.77 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAyisgyeisqdmVQIRKSLGLCPQHDILFdNLTVAEHLYFY 630
Cdd:PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS-----------VVIRGSVAYVPQVSWIF-NATVRENILFG 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 631 AQLKGlSRQKCPEEVKQMLHIIGL-----EDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD 705
Cdd:PLN03232 703 SDFES-ERYWRAIDVTALQHDLDLlpgrdLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 706 -LLQRQKSDRTIVLTT---HFMDeadlLGDRIAIMAKGELQCCG--------SSLFLKQKYGAGyHMTLVKEPHCNPEDI 773
Cdd:PLN03232 782 sCMKDELKGKTRVLVTnqlHFLP----LMDRIILVSEGMIKEEGtfaelsksGSLFKKLMENAG-KMDATQEVNTNDENI 856
|
...
gi 116734710 774 SQL 776
Cdd:PLN03232 857 LKL 859
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1359-1575 |
3.10e-10 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 64.62 E-value: 3.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1359 QDVADERTRILAPSPDSLL--HTPLIIKELSKVYEQRVPllAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLT 1436
Cdd:TIGR02857 298 FAVLDAAPRPLAGKAPVTAapASSLEFSGVSVAYPGRRP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1437 SGDAFVGGHRISS-DVGKVRQRIGYCPQFDALLDHmTGREMLVMY------ARLRGIPERhigACVENTLRGL------L 1503
Cdd:TIGR02857 376 EGSIAVNGVPLADaDADSWRDQIAWVPQHPFLFAG-TIAENIRLArpdasdAEIREALER---AGLDEFVAALpqgldtP 451
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1504 LEPHANKLvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAREsGKAIIITSHSME 1575
Cdd:TIGR02857 452 IGEGGAGL----SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLA 518
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
530-745 |
3.48e-10 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 64.09 E-value: 3.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI-SQDMVQIRKSL 608
Cdd:PRK09536 4 IDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 609 GLCPQHDIL---FDNLTVAE-----HLYFYAQLKGLSRQKcpeeVKQMLHIIGLeDKWNSRS-RFLSGGMRRKLSIGIAL 679
Cdd:PRK09536 80 ASVPQDTSLsfeFDVRQVVEmgrtpHRSRFDTWTETDRAA----VERAMERTGV-AQFADRPvTSLSGGERQRVLLARAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 680 IAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDRIAIMAKGELQCCG 745
Cdd:PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDgKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1402-1590 |
4.33e-10 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 61.95 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI-------SSDVGKVRQRIGYCPQFDALLDHMTGR 1474
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsktpsDKAIRELRRNVGMVFQQYNLWPHLTVQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EMLVMY-ARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLL 1553
Cdd:PRK11124 101 QNLIEApCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
|
170 180 190
....*....|....*....|....*....|....*..
gi 116734710 1554 WDTVARARESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:PRK11124 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1379-1574 |
4.41e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 62.05 E-value: 4.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLI-IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGeesltsgdafvgghRISSDVGKVRQ- 1456
Cdd:PRK09544 2 TSLVsLENVSVSFGQRRVL---SDVSLELKPGKILTLLGPNGAGKSTLVRVVLG--------------LVAPDEGVIKRn 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 ---RIGYCPQ---FDALLDHMTGREMlvmyaRLR-GIPERHIGACVENTLRGLLLEPHANKLvrtySGGNKRKLSTGIAL 1529
Cdd:PRK09544 65 gklRIGYVPQklyLDTTLPLTVNRFL-----RLRpGTKKEDILPALKRVQAGHLIDAPMQKL----SGGETQRVLLARAL 135
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 1530 IGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSM 1574
Cdd:PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRrELDCAVLMVSHDL 181
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1381-1598 |
4.50e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 62.95 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVP--LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVG----GHRISSDVG-- 1452
Cdd:PRK13631 22 LRVKNLYCVFDEKQEneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGdiyiGDKKNNHELit 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1453 -----------KVRQRIGYCPQFDALLDHMTGREMLVMYARLR-GIPERHIGACVENTLRGL-LLEPHANKLVRTYSGGN 1519
Cdd:PRK13631 102 npyskkiknfkELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAlGVKKSEAKKLAKFYLNKMgLDDSYLERSPFGLSGGQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1520 KRKLS-TGIALIgEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13631 182 KRRVAiAGILAI-QPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1402-1546 |
4.66e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 61.12 E-value: 4.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTG---EESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLV 1478
Cdd:cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANrteGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLD 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1479 MYARLRGiperhigacventlrglllephaNKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:cd03233 106 FALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
549-721 |
5.04e-10 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 64.06 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayisgyeisqdmvqirksLGLCPQHDILFdnltVAEHLY 628
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGR------------------IARPAGARVLF----LPQRPY 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 629 FyaQLKGLSRQKC---------PEEVKQMLHIIGL---------EDKWnsrSRFLSGGMRRKLSIGIALIAGSKVLILDE 690
Cdd:COG4178 437 L--PLGTLREALLypataeafsDAELREALEAVGLghlaerldeEADW---DQVLSLGEQQRLAFARLLLHKPDWLFLDE 511
|
170 180 190
....*....|....*....|....*....|.
gi 116734710 691 PTSGMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:COG4178 512 ATSALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1370-1591 |
5.43e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 62.00 E-value: 5.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1370 APSPDSLLH-TPLIIKELSKVYEQRVPLLAVDrlsLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGghriS 1448
Cdd:PRK11247 1 MMNTARLNQgTPLLLNAVSKRYGERTVLNQLD---LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG----T 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1449 SDVGKVRQRIgycpqfdalldhmtgrEMLVMYARLrgIPERHI---------GACVENTLRGLL---LEPHANKLVRTYS 1516
Cdd:PRK11247 74 APLAEAREDT----------------RLMFQDARL--LPWKKVidnvglglkGQWRDAALQALAavgLADRANEWPAALS 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1517 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
530-696 |
5.64e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 63.98 E-value: 5.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISgyeisqDMVQirksLG 609
Cdd:PRK11819 325 IEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG------ETVK----LA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQ-HDILFDNLTVAehlyfyaqlkglsrqkcpEEVKQMLHIIGLEDK-WNSR---SRF-------------LSGGMRR 671
Cdd:PRK11819 391 YVDQsRDALDPNKTVW------------------EEISGGLDIIKVGNReIPSRayvGRFnfkggdqqkkvgvLSGGERN 452
|
170 180
....*....|....*....|....*
gi 116734710 672 KLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
511-741 |
6.24e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 63.89 E-value: 6.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 511 EKALRNEYFEAEPEDLVagIKIKHLSkvfRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRA 590
Cdd:COG3845 241 EVLLRVEKAPAEPGEVV--LEVENLS---VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSI 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 591 YISGYEISQDMVQIRKSLGLC-----PQHDILFDNLTVAEHLYFYAQLKG-------LSRQKCPEEVKQMLhiigleDKW 658
Cdd:COG3845 316 RLDGEDITGLSPRERRRLGVAyipedRLGRGLVPDMSVAENLILGRYRRPpfsrggfLDRKAIRAFAEELI------EEF 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 659 -------NSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKsDR--TIVLTTHFMDEADLL 729
Cdd:COG3845 390 dvrtpgpDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELR-DAgaAVLLISEDLDEILAL 468
|
250
....*....|..
gi 116734710 730 GDRIAIMAKGEL 741
Cdd:COG3845 469 SDRIAVMYEGRI 480
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1401-1572 |
6.89e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.58 E-value: 6.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1401 RLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMY 1480
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1481 ARLrgiperHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARA 1560
Cdd:cd03231 98 HAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
170
....*....|..
gi 116734710 1561 RESGKAIIITSH 1572
Cdd:cd03231 172 CARGGMVVLTTH 183
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
551-718 |
8.43e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 60.27 E-value: 8.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISqdmvQIRKSLGLCPQHDI-LFDNLTVAEHLYF 629
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN----NIAKPYCTYIGHNLgLKLEMTVFENLKF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 630 YAQLKGLSrqkcpEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR 709
Cdd:PRK13541 94 WSEIYNSA-----ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168
|
....*....
gi 116734710 710 QKSDRTIVL 718
Cdd:PRK13541 169 KANSGGIVL 177
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
545-727 |
9.22e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 60.42 E-value: 9.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQI-----RKSLGLCPQHDILFd 619
Cdd:cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAtrsrnRYSVAYAAQKPWLL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 620 NLTVAEHLYFYA----QLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:cd03290 92 NATVEENITFGSpfnkQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 696 DA-----ISRRAIWDLLQRQKsdRTIVLTTH---FMDEAD 727
Cdd:cd03290 172 DIhlsdhLMQEGILKFLQDDK--RTLVLVTHklqYLPHAD 209
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1413-1598 |
1.02e-09 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 61.18 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1413 GLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-SDVG--KVRQRIGYCPQFDALLDHMTGREMLVMYA-RLRGIPE 1488
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDySKRGllALRQQVATVFQDPEQQIFYTDIDSDIAFSlRNLGVPE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1489 RHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAII 1568
Cdd:PRK13638 111 AEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVI 190
|
170 180 190
....*....|....*....|....*....|
gi 116734710 1569 ITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13638 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
544-721 |
1.05e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.89 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 544 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQD--MVQIRKSLGLCPQHDILFDNL 621
Cdd:PTZ00265 396 KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDinLKWWRSKIGVVSQDPLLFSNS 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 ---TVAEHLYFYAQLKGLS--------------------RQKCPEEVKQMLH---------------------------- 650
Cdd:PTZ00265 476 iknNIKYSLYSLKDLEALSnyynedgndsqenknkrnscRAKCAGDLNDMSNttdsneliemrknyqtikdsevvdvskk 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 651 ------IIGLEDKWN----SRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQK--SDRTIVL 718
Cdd:PTZ00265 556 vlihdfVSALPDKYEtlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgnENRITII 635
|
...
gi 116734710 719 TTH 721
Cdd:PTZ00265 636 IAH 638
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1384-1546 |
1.10e-09 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 60.27 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1384 KELSKVY-EQRVPLLAVDrlsLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS----SDVGKVRQRI 1458
Cdd:PRK10908 5 EHVSKAYlGGRQALQGVT---FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlknREVPFLRRQI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1459 GYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
....*...
gi 116734710 1539 DEPSTGMD 1546
Cdd:PRK10908 162 DEPTGNLD 169
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
531-742 |
1.11e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 63.02 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 531 KIKHLSkVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFP-PTSGRAYISGYEIS----QD----- 600
Cdd:PRK13549 261 EVRNLT-AWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKirnpQQaiaqg 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 601 --MV-QIRKSLGLCPQHDILfDNLTVAEhlyfYAQLKGLSRQKCPEEVKQMLHIIG-LEDKWNS---RSRFLSGGMRRKL 673
Cdd:PRK13549 340 iaMVpEDRKRDGIVPVMGVG-KNITLAA----LDRFTGGSRIDDAAELKTILESIQrLKVKTASpelAIARLSGGNQQKA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 674 SIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL-QRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQ 742
Cdd:PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLInQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1390-1570 |
1.14e-09 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 60.71 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1390 YEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALL 1468
Cdd:cd03253 10 YDPGRPVL--KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQ-DTVL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 DHMTGREMlVMYARLRGIPERHIGAC--------VEN------TL---RGLLLephanklvrtySGGNKRKLSTGIALIG 1531
Cdd:cd03253 87 FNDTIGYN-IRYGRPDATDEEVIEAAkaaqihdkIMRfpdgydTIvgeRGLKL-----------SGGEKQRVAIARAILK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIIT 1570
Cdd:cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA 193
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1381-1546 |
1.21e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 62.99 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEesltsgdafvgghrISSDVGKVR----Q 1456
Cdd:PRK15064 320 LEVENLTKGFDNG-PLF--KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--------------LEPDSGTVKwsenA 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RIGYCPQfdallDH-------MTGREMLVMYARlrgipERHIGACVENTL-RGLLLEPHANKLVRTYSGGNKRKLSTGIA 1528
Cdd:PRK15064 383 NIGYYAQ-----DHaydfendLTLFDWMSQWRQ-----EGDDEQAVRGTLgRLLFSQDDIKKSVKVLSGGEKGRMLFGKL 452
|
170
....*....|....*...
gi 116734710 1529 LIGEPAVIFLDEPSTGMD 1546
Cdd:PRK15064 453 MMQKPNVLVMDEPTNHMD 470
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1404-1593 |
1.28e-09 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 60.18 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1404 LAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR-----QRIGYCPQFDALLDHMTGREMLV 1478
Cdd:PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARaklraKHVGFVFQSFMLIPTLNALENVE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1479 MYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDpvarRLLWDTVA 1558
Cdd:PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD----RQTGDKIA 186
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 1559 RA-----RESGKAIIITSHSmEECEALCTRLAIMVQGQFK 1593
Cdd:PRK10584 187 DLlfslnREHGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1398-1591 |
1.34e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.53 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG--------EESLTSGDAFVGGH-RISSDVGKV--RQRIGYCPQFDA 1466
Cdd:TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvyphgtwdGEIYWSGSPLKASNiRDTERAGIViiHQELTLVPELSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDHMTGREmLVMYARLRGIPERHIGAcvENTLRGLLLEPHANKL-VRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGM 1545
Cdd:TIGR02633 96 AENIFLGNE-ITLPGGRMAYNAMYLRA--KNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 1546 DPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:TIGR02633 173 TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1408-1643 |
1.42e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.50 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1408 KGECFGLLGFNGAGKTTTFKMLTGEESLTSGdafvgghrissDVGKVRQRIGYCPQFDALLDHMTGREMlvmyarLRGIP 1487
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-----------DIEIELDTVSYKPQYIKADYEGTVRDL------LSSIT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1488 ERHIGACVENT--LRGLLLEPHANKLVRTYSGGNKRKLSTGIALiGEPAVIFL-DEPSTGMDpVARRLLWDTVAR--ARE 1562
Cdd:cd03237 87 KDFYTHPYFKTeiAKPLQIEQILDREVPELSGGELQRVAIAACL-SKDADIYLlDEPSAYLD-VEQRLMASKVIRrfAEN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1563 SGKAIIITSHSMEECEALCTRLaIMVQGQfkclgspqhlKSKFGSGYSlrakvqSEGQQEALEEFKAFVDLTF------- 1635
Cdd:cd03237 165 NEKTAFVVEHDIIMIDYLADRL-IVFEGE----------PSVNGVANP------PQSLRSGMNRFLKNLDITFrrdpetg 227
|
250
....*....|....
gi 116734710 1636 ------PGSVLEDE 1643
Cdd:cd03237 228 rprinkLGSVKDRE 241
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1381-1600 |
1.75e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 60.32 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEqrvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDA-FVGGHRISSDV---GKVRQ 1456
Cdd:PRK11701 7 LSVRGLTKLYG---PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhYRMRDGQLRDLyalSEAER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RI------GYCPQfdallDHMTGREMLV-----MYARLRGIPERHIGACVENTLRGL-LLEPHANK---LVRTYSGGNKR 1521
Cdd:PRK11701 84 RRllrtewGFVHQ-----HPRDGLRMQVsaggnIGERLMAVGARHYGDIRATAGDWLeRVEIDAARiddLPTTFSGGMQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1522 KLSTGIALIGEPAVIFLDEPSTGMD-PVARRLLwDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQF------- 1592
Cdd:PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDvSVQARLL-DLLRGlVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVvesgltd 237
|
....*...
gi 116734710 1593 KCLGSPQH 1600
Cdd:PRK11701 238 QVLDDPQH 245
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
545-721 |
1.83e-09 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 58.32 E-value: 1.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayisgyeisqdmvqirksLGLCPQHDILFdnltVA 624
Cdd:cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR------------------IGMPEGEDLLF----LP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAqlkGLSRQkcpeevkQMLHiigledKWnsrSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIW 704
Cdd:cd03223 71 QRPYLPL---GTLRE-------QLIY------PW---DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
|
170
....*....|....*..
gi 116734710 705 DLLQRQKSdrTIVLTTH 721
Cdd:cd03223 132 QLLKELGI--TVISVGH 146
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
547-742 |
2.13e-09 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 60.25 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 547 AAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPpTSGRAYISGyeISQDMV---QIRKSLGLCPQHDILFDNlTV 623
Cdd:cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDG--VSWNSVplqKWRKAFGVIPQKVFIFSG-TF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWN----SRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAIS 699
Cdd:cd03289 94 RKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDfvlvDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116734710 700 RRAIWDLLQRQKSDRTIVLTTHFMdEADLLGDRIAIMAKGELQ 742
Cdd:cd03289 174 YQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1402-1601 |
2.54e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 60.06 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTG----EESLTSGDA---FVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGR 1474
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRlieiYDSKIKVDGkvlYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIY 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EMLVMYARLRGIPE-RHIGACVENTLR--GLLLEPH--ANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVA 1549
Cdd:PRK14246 109 DNIAYPLKSHGIKEkREIKKIVEECLRkvGLWKEVYdrLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1550 RRLLWDTVARARESgKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK14246 189 SQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1399-1593 |
2.96e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 61.38 E-value: 2.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGE-ESLTSGDAFVGGHRISSD------------VGKVRQRIGYCPQFD 1465
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVDIRnpaqairagiamVPEDRKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 -------ALLDHMTGREMLVMYARLRgiperhigaCVENTLRGLLLEPHANKL-VRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:TIGR02633 356 vgknitlSVLKSFCFKMRIDAAAELQ---------IIGSAIQRLKVKTASPFLpIGRLSGGNQQKAVLAKMLLTNPRVLI 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFK 1593
Cdd:TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
1390-1611 |
3.56e-09 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 59.09 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1390 YEQR--VPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDA 1466
Cdd:cd03249 10 YPSRpdVPIL--KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDhMTGREMLVmYARLRGIPERHIGACVE--------------NTLRGlllePHANKLvrtySGGNKRKLSTGIALIGE 1532
Cdd:cd03249 88 LFD-GTIAENIR-YGKPDATDEEVEEAAKKanihdfimslpdgyDTLVG----ERGSQL----SGGQKQRIAIARALLRN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1533 PAVIFLDEPSTGMDPVARRLLWDTVARAREsGKAIIITSHSmeeceaLCT-----RLAIMVQGQFKCLGSPQHLKSKFGS 1607
Cdd:cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAHR------LSTirnadLIAVLQNGQVVEQGTHDELMAQKGV 230
|
....
gi 116734710 1608 GYSL 1611
Cdd:cd03249 231 YAKL 234
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
1375-1575 |
4.05e-09 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 61.68 E-value: 4.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1375 SLLHTPLIIKELSKVYEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGK 1453
Cdd:TIGR01193 468 NNLNGDIVINDVSYSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiDRHT 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1454 VRQRIGYCPQfDALLDHMTGREMLVMYARLRGIPERHIGAC--------VENTLRGL--LLEPHANKLvrtySGGNKRKL 1523
Cdd:TIGR01193 546 LRQFINYLPQ-EPYIFSGSILENLLLGAKENVSQDEIWAACeiaeikddIENMPLGYqtELSEEGSSI----SGGQKQRI 620
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1524 STGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAREsgKAIIITSHSME 1575
Cdd:TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS 670
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1355-1572 |
4.87e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.10 E-value: 4.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1355 LPEDQDVADERTRILAPSPDSLLHTPLIIKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEES 1434
Cdd:TIGR03719 297 LSQEFQKRNETAEIYIPPGPRLGDKVIEAENLTKAFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1435 LTSGDAFVGghrisSDVgkvrqRIGYCPQF-DALLDHMT-------GREMLVMYArlRGIPER-HIGACvenTLRGllle 1505
Cdd:TIGR03719 374 PDSGTIEIG-----ETV-----KLAYVDQSrDALDPNKTvweeisgGLDIIKLGK--REIPSRaYVGRF---NFKG---- 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1506 PHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPvarrllwDTVaRARES------GKAIIItSH 1572
Cdd:TIGR03719 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV-------ETL-RALEEallnfaGCAVVI-SH 498
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1391-1572 |
4.89e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 61.40 E-value: 4.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1391 EQRVPllaVDRLSL------AVQKGECFGLLGFNGAGKTTTFKMLTGEESltsGDAFVGGHRISSDVGKVRQ--RI-GYC 1461
Cdd:PLN03140 885 EQGVT---EDRLQLlrevtgAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETfaRIsGYC 958
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDHMTGREMLVMYARLR-----GIPERHIgaCVENTLRGLLLEPHANKLV-----RTYSGGNKRKLSTGIALIG 1531
Cdd:PLN03140 959 EQNDIHSPQVTVRESLIYSAFLRlpkevSKEEKMM--FVDEVMELVELDNLKDAIVglpgvTGLSTEQRKRLTIAVELVA 1036
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:PLN03140 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
502-739 |
4.90e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.90 E-value: 4.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 502 GKEEEDSDPEKalrneyfEAEPEDLVagIKIKHLSkvfrvgNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTG 581
Cdd:PRK10982 232 GRSLTQRFPDK-------ENKPGEVI--LEVRNLT------SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 582 LFPPTSGRAYISGYEISQD------------MVQIRKSLGLCPQHDILFDNLtVAEHLYFYAQLKGLSRQKCPEEVKQMl 649
Cdd:PRK10982 297 IREKSAGTITLHGKKINNHnaneainhgfalVTEERRSTGIYAYLDIGFNSL-ISNIRNYKNKVGLLDNSRMKSDTQWV- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 650 hIIGLEDKWNSRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDL-LQRQKSDRTIVLTTHFMDE 725
Cdd:PRK10982 375 -IDSMRVKTPGHRTQigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLiAELAKKDKGIIIISSEMPE 453
|
250
....*....|....*.
gi 116734710 726 adLLG--DRIAIMAKG 739
Cdd:PRK10982 454 --LLGitDRILVMSNG 467
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1381-1575 |
5.65e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 59.33 E-value: 5.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRVP--LLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSG-------------------- 1438
Cdd:PRK13651 3 IKVKNIVKIFNKKLPteLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiewifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1439 --DAFVGGHRISSDVGKV---RQRIGYCPQF-DALLDHMTGREMLVMYARLRGIPERHigacventlrglllephANKLV 1512
Cdd:PRK13651 83 vlEKLVIQKTRFKKIKKIkeiRRRVGVVFQFaEYQLFEQTIEKDIIFGPVSMGVSKEE-----------------AKKRA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1513 RTY------------------SGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSM 1574
Cdd:PRK13651 146 AKYielvgldesylqrspfelSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225
|
.
gi 116734710 1575 E 1575
Cdd:PRK13651 226 D 226
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1402-1608 |
5.89e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 58.70 E-value: 5.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTT---TFKMLT--GEESLTSGDAFVGGHRISS---DVGKVRQRIGYCPQFDALLDHMTG 1473
Cdd:PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTllrTFNRLLelNEEARVEGEVRLFGRNIYSpdvDPIEVRREVGMVFQYPNPFPHLTI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARLRGI--PERHIGACVENTLRGLLLEPHANKLVRTY----SGGNKRKLSTGIALIGEPAVIFLDEPSTGMDP 1547
Cdd:PRK14267 103 YDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRLNDYpsnlSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1548 VARRLLWDTVARARESgKAIIITSHSMEECEALCTRLAIMVQGQF-------KCLGSPQH-LKSKFGSG 1608
Cdd:PRK14267 183 VGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLievgptrKVFENPEHeLTEKYVTG 250
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
545-825 |
5.90e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 61.29 E-value: 5.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 545 DRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYIsgyeisqdmvqIRKSLGLCPQHDILFdNLTVA 624
Cdd:PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIF-NATVR 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAQLKglsrqkcPEEVKQMLHIIGLEDKWNS-----------RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:PLN03130 697 DNILFGSPFD-------PERYERAIDVTALQHDLDLlpggdlteigeRGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 694 GMDAISRRAIWD-LLQRQKSDRTIVLTT---HFMDEAdllgDRIAIMAKGELQ--------CCGSSLFLKQKYGAGYHMT 761
Cdd:PLN03130 770 ALDAHVGRQVFDkCIKDELRGKTRVLVTnqlHFLSQV----DRIILVHEGMIKeegtyeelSNNGPLFQKLMENAGKMEE 845
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 762 LVKEP--HCNPEDISQLVHHHVPNATLESSAgaelsfilprESTHRFEGLFAKLEKKQKELGIASF 825
Cdd:PLN03130 846 YVEENgeEEDDQTSSKPVANGNANNLKKDSS----------SKKKSKEGKSVLIKQEERETGVVSW 901
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
530-721 |
6.10e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 58.59 E-value: 6.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayisgyeISQDmVQIRksLG 609
Cdd:PRK09544 5 VSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-------IKRN-GKLR--IG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 610 LCPQHdILFDN---LTVAEHLYFYAQLKGLSRQKCPEEVkQMLHIIgledkwNSRSRFLSGGMRRKLSIGIALIAGSKVL 686
Cdd:PRK09544 71 YVPQK-LYLDTtlpLTVNRFLRLRPGTKKEDILPALKRV-QAGHLI------DAPMQKLSGGETQRVLLARALLNRPQLL 142
|
170 180 190
....*....|....*....|....*....|....*..
gi 116734710 687 ILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTH 721
Cdd:PRK09544 143 VLDEPTQGVDVNGQVALYDLIDqlRRELDCAVLMVSH 179
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1398-1628 |
6.40e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 60.67 E-value: 6.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHR----ISSdvgkvrqrigycpqfdALLDHMTG 1473
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAaliaISS----------------GLNGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1474 REMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP-STGMDPVARRL 1552
Cdd:PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAlSVGDQTFTKKC 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1553 LwDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGS---GYSLRAKVQSEG-QQEALEEFK 1628
Cdd:PRK13545 183 L-DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEflkKYNQMSVEERKDfREEQISQFQ 261
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
528-745 |
6.78e-09 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 58.74 E-value: 6.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 528 AGIKIKHLSKVFRVGNkdrAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQdmvQIRKS 607
Cdd:PRK15056 5 AGIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 608 L-GLCPQHD-------ILFDNLTVAEHlyfYAQLKGLSRQKCPEE--VKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGI 677
Cdd:PRK15056 79 LvAYVPQSEevdwsfpVLVEDVVMMGR---YGHMGWLRRAKKRDRqiVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 678 ALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSD-RTIVLTTHFMDEADLLGDrIAIMAKGELQCCG 745
Cdd:PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEgKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASG 223
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1399-1591 |
8.03e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.02 E-value: 8.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-------DVGKV-----RQRigycpqfDA 1466
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTrspqdglANGIVyisedRKR-------DG 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDHMTGREMLVMYA---------RLRGIPERhigACVENTLRGLLLE-PHANKLVRTYSGGNKRKLSTGIALIGEPAVI 1536
Cdd:PRK10762 341 LVLGMSVKENMSLTAlryfsraggSLKHADEQ---QAVSDFIRLFNIKtPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1537 FLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1395-1584 |
8.21e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.55 E-value: 8.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLAVDRLSLAVQKGECFGLLGF-------------NGAGKTTTFKMLTGEESLTSGDAFVGGHRISSdvGKVRQRIGYC 1461
Cdd:PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFhvdageallvqgdNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR--GDRSRFMAYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1462 PQFDALLDHMTGREMLVMYARLRGipeRHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEP 1541
Cdd:PRK13543 88 GHLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116734710 1542 STGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRL 1584
Cdd:PRK13543 165 YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM 207
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
549-760 |
8.44e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.73 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTttlSMLTGLF---PPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFDNlTVA 624
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKS---SLTLGLFrinESAEGEIIIDGLNIAKiGLHDLRFKITIIPQDPVLFSG-SLR 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 625 EHLYFYAQLKglsrqkcPEEVKQMLHIIGLE-------DKWNSR----SRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:TIGR00957 1378 MNLDPFSQYS-------DEEVWWALELAHLKtfvsalpDKLDHEcaegGENLSVGQRQLVCLARALLRKTKILVLDEATA 1450
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 694 GMDAISRRAIWDLLQRQKSDRTIVLTTH----FMDEAdllgdRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Cdd:TIGR00957 1451 AVDLETDNLIQSTIRTQFEDCTVLTIAHrlntIMDYT-----RVIVLDKGEVAEFGAPSNLLQQRGIFYSM 1516
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1379-1600 |
8.69e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 58.65 E-value: 8.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLIIKELSKVYEQRVPLL------AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS---- 1448
Cdd:PRK15112 3 TLLEVRNLSKTFRYRTGWFrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdy 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1449 --------------SDVGKVRQRIGYCPQFDALLD-HMTGREMlvmyarlrgipERHIGAcvenTLRGL-LLEPHANKLV 1512
Cdd:PRK15112 83 syrsqrirmifqdpSTSLNPRQRISQILDFPLRLNtDLEPEQR-----------EKQIIE----TLRQVgLLPDHASYYP 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1513 RTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGE 227
|
250
....*....|....*.
gi 116734710 1592 F-------KCLGSPQH 1600
Cdd:PRK15112 228 VvergstaDVLASPLH 243
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
537-721 |
1.02e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 60.11 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 537 KVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHD 615
Cdd:PRK10789 319 RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKlQLDSWRSRLAVVSQTP 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 616 ILFDNlTVAEHLyfyAQLKGLSRQKCPEEVKQMLHI--------IGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLI 687
Cdd:PRK10789 399 FLFSD-TVANNI---ALGRPDATQQEIEHVARLASVhddilrlpQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474
|
170 180 190
....*....|....*....|....*....|....
gi 116734710 688 LDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAH 508
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1383-1610 |
1.06e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 59.82 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLtsgdafvgghriSSDVGKVRQRIGYCP 1462
Cdd:TIGR03269 3 VKNLTKKFDGKEVL---KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQY------------EPTSGRIIYHVALCE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1463 Q---------------------------FDALLDHMTG---REMLVMYAR--------------LRGIPE------RHIG 1492
Cdd:TIGR03269 68 KcgyverpskvgepcpvcggtlepeevdFWNLSDKLRRrirKRIAIMLQRtfalygddtvldnvLEALEEigyegkEAVG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1493 ACVEnTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARA-RESGKAIIITS 1571
Cdd:TIGR03269 148 RAVD-LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTS 226
|
250 260 270
....*....|....*....|....*....|....*....
gi 116734710 1572 HSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYS 1610
Cdd:TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVS 265
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1398-1592 |
1.08e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 59.63 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGD-AFVG------GHRISSDVGkvrqrIGYCPQFDALLDH 1470
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSiLYLGkevtfnGPKSSQEAG-----IGIIHQELNLIPQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MT-------GREMLvmyARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPST 1543
Cdd:PRK10762 94 LTiaeniflGREFV---NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 1544 GMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:PRK10762 171 ALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1402-1601 |
1.17e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 58.07 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK-VRQRIGYCPQFDALLDHMTGREMLV-- 1478
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNATTPGDITVQELVArg 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1479 ------MYARLRGIPErhigACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRL 1552
Cdd:PRK10253 106 ryphqpLFTRWRKEDE----EAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 1553 LWDTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1601
Cdd:PRK10253 182 LLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
548-740 |
1.60e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 59.17 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFP--PTSGRAYISGYEISQDMVQI--RKSLGLCPQHDILFDNLTV 623
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEELQASNIRDteRAGIAIIHQELALVKELSV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 624 AEHLYFYAQLKGLSRQKCPE---EVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Cdd:PRK13549 100 LENIFLGNEITPGGIMDYDAmylRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 701 RAIWDLLQRQKS-DRTIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK13549 180 AVLLDIIRDLKAhGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1398-1610 |
1.83e-08 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 57.40 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI---SSDVGKVRQRIGYCPQFDALLDHMTGR 1474
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVegpGAERGVVFQNEGLLPWRNVQDNVAFGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EmlvmyarLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLW 1554
Cdd:PRK11248 96 Q-------LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1555 DTVARA-RESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLgspQHLKSKFGSGYS 1610
Cdd:PRK11248 169 TLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV---ERLPLNFARRFV 222
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1399-1593 |
2.38e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 58.79 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGE-ESLTSGDAFVGGHRISSD------------VGKVRQRIGYCPQFD 1465
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVKIRnpqqaiaqgiamVPEDRKRDGIVPVMG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 -------ALLDHMTGREMLVMYARLRgiperhigaCVENTLRGLLLE-PHANKLVRTYSGGNKRKLSTGIALIGEPAVIF 1537
Cdd:PRK13549 358 vgknitlAALDRFTGGSRIDDAAELK---------TILESIQRLKVKtASPELAIARLSGGNQQKAVLAKCLLLNPKILI 428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1538 LDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFK 1593
Cdd:PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
553-741 |
2.83e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 58.38 E-value: 2.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 553 NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ--IRKSLGLCPQhDILFDNL----TVAEH 626
Cdd:PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRdaIRAGIMLCPE-DRKAEGIipvhSVADN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 627 LYFYAQLK----GLSRQKCPEEVKQMLHIIGLEDKWNSRS---RFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAIS 699
Cdd:PRK11288 352 INISARRHhlraGCLINNRWEAENADRFIRSLNIKTPSREqliMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 116734710 700 RRAIWDLL-QRQKSDRTIVLTTHfmDEADLLG--DRIAIMAKGEL 741
Cdd:PRK11288 432 KHEIYNVIyELAAQGVAVLFVSS--DLPEVLGvaDRIVVMREGRI 474
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
548-702 |
3.09e-08 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 57.28 E-value: 3.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQhdILFDN------- 620
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ--IVFQNpygslnp 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 -----LTVAEHLYFYAQlkgLSRQKCPEEVKQMLHIIGLEDKWNSR-SRFLSGGMRRKLSIGIALIAGSKVLILDEPTSG 694
Cdd:PRK11308 108 rkkvgQILEEPLLINTS---LSAAERREKALAMMAKVGLRPEHYDRyPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184
|
....*...
gi 116734710 695 MDaISRRA 702
Cdd:PRK11308 185 LD-VSVQA 191
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
504-741 |
3.74e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 58.33 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 504 EEEDSDPEKALRNEYFEAEP----EDLVAGIKIKhlSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 579
Cdd:PRK10261 293 EHPAKQEPPIEQDTVVDGEPilqvRNLVTRFPLR--SGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 580 TGLFPPTSGRAYISGYEI----SQDMVQIRKSL---------GLCPQHDILFdnlTVAEHLYFYAQLKGLSRQKcpeEVK 646
Cdd:PRK10261 371 LRLVESQGGEIIFNGQRIdtlsPGKLQALRRDIqfifqdpyaSLDPRQTVGD---SIMEPLRVHGLLPGKAAAA---RVA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 647 QMLHIIGL--EDKWNSRSRFlSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTI--VLTTHF 722
Cdd:PRK10261 445 WLLERVGLlpEHAWRYPHEF-SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIayLFISHD 523
|
250
....*....|....*....
gi 116734710 723 MDEADLLGDRIAIMAKGEL 741
Cdd:PRK10261 524 MAVVERISHRVAVMYLGQI 542
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1400-1603 |
4.12e-08 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 56.31 E-value: 4.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1400 DRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI----SSDVGKVRQRIGYCPQFDALLDHMTGRE 1475
Cdd:PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVRKRMSMLFQSGALFTDMNVFD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1476 MLVMYARLRG-IPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRK--LSTGIALigEPAVIFLDEPSTGMDPVARRL 1552
Cdd:PRK11831 104 NVAYPLREHTqLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRaaLARAIAL--EPDLIMFDEPFVGQDPITMGV 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1553 LWDTVARARES-GKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1603
Cdd:PRK11831 182 LVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
523-708 |
4.39e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 57.79 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 523 PEDLVAGIKIKHLSKVF---------RVGNKdrAAVRDLNLNLYEGQITVLLGHNGAGKTTT-LSMLTGLfpPTSGRAYI 592
Cdd:PRK15134 269 PEPASPLLDVEQLQVAFpirkgilkrTVDHN--VVVKNISFTLRPGETLGLVGESGSGKSTTgLALLRLI--NSQGEIWF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 593 SGYEISQ----DMVQIRKSL---------GLCPQHDILfdnLTVAEHLYFYAqlKGLSRQKCPEEVKQMLHIIGLEDKwn 659
Cdd:PRK15134 345 DGQPLHNlnrrQLLPVRHRIqvvfqdpnsSLNPRLNVL---QIIEEGLRVHQ--PTLSAAQREQQVIAVMEEVGLDPE-- 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 660 SRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ 708
Cdd:PRK15134 418 TRHRYpaeFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
551-739 |
4.49e-08 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 57.19 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 551 DLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisQDMVQIRKSLGLCP---------QHDILFDNL 621
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG----RVLFDAEKGICLPPekrrigyvfQDARLFPHY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEHLYFyaqlkGLSRqKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRR 701
Cdd:PRK11144 92 KVRGNLRY-----GMAK-SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 116734710 702 AIWDLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKG 739
Cdd:PRK11144 166 ELLPYLERlaREINIPILYVSHSLDEILRLADRVVVLEQG 205
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1390-1572 |
4.51e-08 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 57.87 E-value: 4.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1390 YEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALL 1468
Cdd:COG1132 349 YPGDRPVL--KDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQ-DTFL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 DHMT-------GR-----EMLVMYARLrgiperhigACVENTLRGL------LLEPHANKLvrtySGGNKRKLStgIA-- 1528
Cdd:COG1132 426 FSGTireniryGRpdatdEEVEEAAKA---------AQAHEFIEALpdgydtVVGERGVNL----SGGQRQRIA--IAra 490
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 116734710 1529 LIGEPAVIFLDEPSTGMDPVARRLLWDTVARAREsGKAIIITSH 1572
Cdd:COG1132 491 LLKDPPILILDEATSALDTETEALIQEALERLMK-GRTTIVIAH 533
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1402-1599 |
4.68e-08 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 55.79 E-value: 4.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRIS-------SDVGKVRQRIGYCPQFDALLDHMTGR 1474
Cdd:COG4161 21 INLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqkpseKAIRLLRQKVGMVFQQYNLWPHLTVM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EMLVMY-ARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLL 1553
Cdd:COG4161 101 ENLIEApCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQV 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1554 WDTVARARESGKAIIITSHSMEECEALCTRLA------IMVQGQFKCLGSPQ 1599
Cdd:COG4161 181 VEIIRELSQTGITQVIVTHEVEFARKVASQVVymekgrIIEQGDASHFTQPQ 232
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1398-1591 |
4.81e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 57.63 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG--------EESLTSGDAFVGGH-RISSDVGKVrqrIGYcpQFDALL 1468
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvyphgtyeGEIIFEGEELQASNiRDTERAGIA---IIH--QELALV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 DHMT-------GREML--------VMYARlrgiperhigacVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEP 1533
Cdd:PRK13549 95 KELSvleniflGNEITpggimdydAMYLR------------AQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
537-741 |
5.16e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 57.49 E-value: 5.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 537 KVFRVGN--------KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTtLSMltGLFPPT-----SGRAYISGYEISQDMVQ 603
Cdd:NF040905 256 VVFEVKNwtvyhplhPERKVVDDVSLNVRRGEIVGIAGLMGAGRTE-LAM--SVFGRSygrniSGTVFKDGKEVDVSTVS 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 604 --I----------RKSLGLCPQHDILFdNLTVAEhlyfyaqLKGLSRQKCPEEVKQMLHIIGLEDKWNSRS-------RF 664
Cdd:NF040905 333 daIdaglayvtedRKGYGLNLIDDIKR-NITLAN-------LGKVSRRGVIDENEEIKVAEEYRKKMNIKTpsvfqkvGN 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 665 LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR-QKSDRTIVLTTHFMDEadLLG--DRIAIMAKGEL 741
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINElAAEGKGVIVISSELPE--LLGmcDRIYVMNEGRI 482
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1397-1614 |
6.28e-08 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 55.57 E-value: 6.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDALL------- 1468
Cdd:cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQENVLFnrsirdn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 ----DHMTGREMLVMYARLRG-------IPERHigacveNTL---RGLLLephanklvrtySGGNKRKLSTGIALIGEPA 1534
Cdd:cd03252 96 ialaDPGMSMERVIEAAKLAGahdfiseLPEGY------DTIvgeQGAGL-----------SGGQRQRIAIARALIHNPR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1535 VIFLDEPSTGMDPVARRLLWDTVaRARESGKAIIITSHSMEECEAlCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1614
Cdd:cd03252 159 ILIFDEATSALDYESEHAIMRNM-HDICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1398-1600 |
9.25e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.79 E-value: 9.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRI----SSDVGKVRQRIGYCPQFD-ALLD--H 1470
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlsPGKLQALRRDIQFIFQDPyASLDprQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MTG---REMLVMYARLRG-IPERHIGACVENTlrGLLLEpHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:PRK10261 419 TVGdsiMEPLRVHGLLPGkAAAARVAWLLERV--GLLPE-HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1547 PVAR----RLLWDTvarARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLG-------SPQH 1600
Cdd:PRK10261 496 VSIRgqiiNLLLDL---QRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGprravfeNPQH 557
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
564-741 |
9.90e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.29 E-value: 9.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 564 LLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFDNlTVAEHLYFYAQ------LKGL 636
Cdd:PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEhndadlWEAL 1345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 637 SRQKCPEEVKQmlHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTI 716
Cdd:PLN03232 1346 ERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423
|
170 180
....*....|....*....|....*
gi 116734710 717 VLTTHFMDEAdLLGDRIAIMAKGEL 741
Cdd:PLN03232 1424 LVIAHRLNTI-IDCDKILVLSSGQV 1447
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1390-1606 |
1.04e-07 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 54.54 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1390 YEQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALL 1468
Cdd:cd03254 12 YDEKKPVL--KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQ-DTFL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1469 DHMTGREMLvMYARLRGIPERHIGAC--------VENTLRGLL--LEPHANKLvrtySGGNKRKLSTGIALIGEPAVIFL 1538
Cdd:cd03254 89 FSGTIMENI-RLGRPNATDEEVIEAAkeagahdfIMKLPNGYDtvLGENGGNL----SQGERQLLAIARAMLRDPKILIL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1539 DEPSTGMDPVARRLLWDTVARAREsGKAIIITSHsmeecealctRLA-------IMV--QGQFKCLGSPQHLKSKFG 1606
Cdd:cd03254 164 DEATSNIDTETEKLIQEALEKLMK-GRTSIIIAH----------RLStiknadkILVldDGKIIEEGTHDELLAKKG 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1357-1546 |
1.09e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 56.67 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1357 EDQDVADERTRILAPSPDSLLHTPLIIKELSKVYEQRvplLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLT 1436
Cdd:PRK11819 301 EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1437 SGDAFVGghrisSDVgkvrqRIGYCPQF-DAL-------------LDHMT--GREMlvmyarlrgiPER-HIGACvenTL 1499
Cdd:PRK11819 378 SGTIKIG-----ETV-----KLAYVDQSrDALdpnktvweeisggLDIIKvgNREI----------PSRaYVGRF---NF 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 116734710 1500 RGlllePHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:PRK11819 435 KG----GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
548-740 |
1.35e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.28 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI----SQDMVQ-----IRKSLGLCPQHDILf 618
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfksSKEALEngismVHQELNLVLQRSVM- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 619 DNLTVAEHlyfyaQLKGL--SRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PRK10982 92 DNMWLGRY-----PTKGMfvDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 697 AISRRAIWDLLQRQKsDR--TIVLTTHFMDEADLLGDRIAIMAKGE 740
Cdd:PRK10982 167 EKEVNHLFTIIRKLK-ERgcGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
561-727 |
1.83e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 53.38 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 561 ITVLLGHNGAGKTTTLS----MLTGLFPP--------------TSGRAYI-------SG--YEISQDMVQIRKSLgLCPQ 613
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEalkyALTGELPPnskggahdpklireGEVRAQVklafenaNGkkYTITRSLAILENVI-FCHQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 614 HDI---LFDNLTvaehlyfyaqlkglsrqkcpeevkqmlhiigledkwnsrsrFLSGGMRRKLSIGIAL-IA---GSK-- 684
Cdd:cd03240 103 GESnwpLLDMRG-----------------------------------------RCSGGEKVLASLIIRLaLAetfGSNcg 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 685 VLILDEPTSGMDAISRR-AIWDLL--QRQKSDRTIVLTTH---FMDEAD 727
Cdd:cd03240 142 ILALDEPTTNLDEENIEeSLAEIIeeRKSQKNFQLIVITHdeeLVDAAD 190
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1398-1569 |
2.38e-07 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 53.77 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQfDALLDHMTGREM 1476
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQ-DVFLFNDTVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 lVMYARLRGIPERHIGAC--------VENTLRGL--LLEPHANKLvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:cd03251 96 -IAYGRPGATREEVEEAAraanahefIMELPEGYdtVIGERGVKL----SGGQRQRIAIARALLKDPPILILDEATSALD 170
|
170 180
....*....|....*....|...
gi 116734710 1547 PVARRLLWDTVARARESGKAIII 1569
Cdd:cd03251 171 TESERLVQAALERLMKNRTTFVI 193
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
553-741 |
2.38e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.41 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 553 NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYIS-------GYEISQDMV----QIRKSLGLCPQHDilfD-N 620
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQfshitrlSFEQLQKLVsdewQRNNTDMLSPGED---DtG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 621 LTVAEHLyfyaQLKGLSRQKCpEEVKQMLHIIGLEDKwnsRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Cdd:PRK10938 100 RTTAEII----QDEVKDPARC-EQLAQQFGITALLDR---RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 701 RAIWDLLQR-QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK10938 172 QQLAELLASlHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL 213
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1399-1576 |
2.73e-07 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 53.18 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGEcFGLL-GFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDALLDHmTGREM 1476
Cdd:PRK10247 23 LNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYCAQTPTLFGD-TVYDN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLRGI-PERHigACVENTLRGLLLEPHANKLVRTYSGGNKRKlstgIALIGE----PAVIFLDEPSTGMDPVARR 1551
Cdd:PRK10247 101 LIFPWQIRNQqPDPA--IFLDDLERFALPDTILTKNIAELSGGEKQR----ISLIRNlqfmPKVLLLDEITSALDESNKH 174
|
170 180
....*....|....*....|....*.
gi 116734710 1552 LLWDTVAR-ARESGKAIIITSHSMEE 1576
Cdd:PRK10247 175 NVNEIIHRyVREQNIAVLWVTHDKDE 200
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
647-740 |
3.25e-07 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 54.42 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 647 QMLHIIGLEDKWNSRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQR--QKSDRTIVLTTH 721
Cdd:PRK15093 138 ELLHRVGIKDHKDAMRSFpyeLTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRlnQNNNTTILLISH 217
|
90
....*....|....*....
gi 116734710 722 FMDEADLLGDRIAIMAKGE 740
Cdd:PRK15093 218 DLQMLSQWADKINVLYCGQ 236
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
552-746 |
4.12e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 53.01 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 552 LNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFpPTSGRAYISGYEISQ----DMVQIRKSlgLCPQHDILFdNLTVAEHL 627
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAwsaaELARHRAY--LSQQQTPPF-AMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 628 --YFYAQLKGLSRQKCPEEVKQMLhiiGLEDKWNSRSRFLSGG--MRRKLS-----IGIALIAGSKVLILDEPTSGMDaI 698
Cdd:PRK03695 91 tlHQPDKTRTEAVASALNEVAEAL---GLDDKLGRSVNQLSGGewQRVRLAavvlqVWPDINPAGQLLLLDEPMNSLD-V 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 699 SRRAIWDLLQRQ--KSDRTIVLTTHfmdeaDL-----LGDRIAIMAKGELQCCGS 746
Cdd:PRK03695 167 AQQAALDRLLSElcQQGIAVVMSSH-----DLnhtlrHADRVWLLKQGKLLASGR 216
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1395-1546 |
4.25e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.96 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSG------DAFVGghRISSDVGK-------------VR 1455
Cdd:PRK11147 17 PLL--DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGriiyeqDLIVA--RLQQDPPRnvegtvydfvaegIE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 QRIGYCPQFDALLDHMT---GREMLVMYARLRGIPERHIGACVENTLRGLL--LEPHANKLVRTYSGGNKRKLSTGIALI 1530
Cdd:PRK11147 93 EQAEYLKRYHDISHLVEtdpSEKNLNELAKLQEQLDHHNLWQLENRINEVLaqLGLDPDAALSSLSGGWLRKAALGRALV 172
|
170
....*....|....*.
gi 116734710 1531 GEPAVIFLDEPSTGMD 1546
Cdd:PRK11147 173 SNPDVLLLDEPTNHLD 188
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
564-696 |
4.52e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.13 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 564 LLGHNGAGKTttlSMLTGLF---PPTSGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFD-----NLT-VAEHlyFYAQL 633
Cdd:PLN03130 1270 IVGRTGAGKS---SMLNALFrivELERGRILIDGCDISKfGLMDLRKVLGIIPQAPVLFSgtvrfNLDpFNEH--NDADL 1344
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 634 -KGLSRQKCPEEVKQmlHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PLN03130 1345 wESLERAHLKDVIRR--NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
542-707 |
5.15e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.41 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 542 GNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisqdmvQIRksLGLCPQHDILFdnL 621
Cdd:PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--------GIK--LGYFAQHQLEF--L 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 622 TVAEhlyfyAQLKGLSRQkCPEEVKQMLHI----IGLE-DKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMD 696
Cdd:PRK10636 389 RADE-----SPLQHLARL-APQELEQKLRDylggFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
170
....*....|.
gi 116734710 697 AISRRAIWDLL 707
Cdd:PRK10636 463 LDMRQALTEAL 473
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1399-1619 |
5.22e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 53.18 E-value: 5.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSG-----DAFVGGHRISS--DVGKVRQRIGYC-----PQFDA 1466
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNyrDVLEFRRRVGMLfqrpnPFPMS 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDHMTG---REMLVMYARLRGIPERHIgacVENTLRGLLLEPHANKLVRtYSGGNKRKLSTGIALIGEPAVIFLDEPST 1543
Cdd:PRK14271 117 IMDNVLAgvrAHKLVPRKEFRGVAQARL---TEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1544 GMDPVARRLLWDTVaRARESGKAIIITSHSMEECEALCTRLAIMVQGQF-------KCLGSPQHLKS-KFGSGYSLRAKV 1615
Cdd:PRK14271 193 ALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLveegpteQLFSSPKHAETaRYVAGLSGDVKD 271
|
....
gi 116734710 1616 QSEG 1619
Cdd:PRK14271 272 AKRG 275
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1379-1590 |
5.91e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 54.29 E-value: 5.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1379 TPLIikELSKVYEQ--RVPLL-AVDrlsLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR 1455
Cdd:PRK15439 9 PPLL--CARSISKQysGVEVLkGID---FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1456 QRIG-Y-CPQFDALLDHMTGRE-MLVMYARLRGIPERhigacVENTLRGL--LLEPHAN---------KLVRTYSGgnkr 1521
Cdd:PRK15439 84 HQLGiYlVPQEPLLFPNLSVKEnILFGLPKRQASMQK-----MKQLLAALgcQLDLDSSagslevadrQIVEILRG---- 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 1522 klstgiaLIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:PRK15439 155 -------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
558-736 |
6.96e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 54.02 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 558 EGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayiSGYEISQDMVqIRKSLGlcpqhDILFD--------NLTVA---EH 626
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGD---YDEEPSWDEV-LKRFRG-----TELQDyfkklangEIKVAhkpQY 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 627 LYFYA-QLKGLSRQ--KCPEEVKQMLHII---GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Cdd:COG1245 169 VDLIPkVFKGTVREllEKVDERGKLDELAeklGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQR 248
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 701 ----RAIWDLLqrqKSDRTIVLTTHfmDEA--DLLGDRIAIM 736
Cdd:COG1245 249 lnvaRLIRELA---EEGKYVLVVEH--DLAilDYLADYVHIL 285
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1381-1612 |
7.24e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 54.06 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1381 LIIKELSKVYEQRvPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIG 1459
Cdd:PRK11160 339 LTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1460 YCPQ----FDALLdhmtgREMLVMyARLRGIPERHIGACVENTLRGLLLEPHANKLV-----RTYSGGNKRKLSTGIALI 1530
Cdd:PRK11160 418 VVSQrvhlFSATL-----RDNLLL-AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWlgeggRQLSGGEQRRLGIARALL 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1531 GEPAVIFLDEPSTGMDPVA-RRLLwdTVARARESGKAIIITSH---SMEECEALCtrlaIMVQGQFKCLGSPQHLKSKFG 1606
Cdd:PRK11160 492 HDAPLLLLDEPTEGLDAETeRQIL--ELLAEHAQNKTVLMITHrltGLEQFDRIC----VMDNGQIIEQGTHQELLAQQG 565
|
....*.
gi 116734710 1607 SGYSLR 1612
Cdd:PRK11160 566 RYYQLK 571
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1400-1572 |
1.01e-06 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 51.34 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1400 DRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVM 1479
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1480 YARLRGIPERhigACVENTLRGLLLEPHANKLVRTYSGGNKRKlstgIAL----IGEPAVIFLDEPSTGMDPVARRLLWD 1555
Cdd:PRK13538 98 YQRLHGPGDD---EALWEALAQVGLAGFEDVPVRQLSAGQQRR----VALarlwLTRAPLWILDEPFTAIDKQGVARLEA 170
|
170
....*....|....*..
gi 116734710 1556 TVARARESGKAIIITSH 1572
Cdd:PRK13538 171 LLAQHAEQGGMVILTTH 187
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1414-1597 |
1.18e-06 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 52.57 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1414 LLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKV-----RQRIGYCPQfDA-LLDHMTGREMLvMYARLRGIP 1487
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIclppeKRRIGYVFQ-DArLFPHYKVRGNL-RYGMAKSMV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1488 ERHigacveNTLRGLL-LEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD-PVARRLLWDTVARARESGK 1565
Cdd:PRK11144 107 AQF------DKIVALLgIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlPRKRELLPYLERLAREINI 180
|
170 180 190
....*....|....*....|....*....|..
gi 116734710 1566 AIIITSHSMEECEALCTRLAIMVQGQFKCLGS 1597
Cdd:PRK11144 181 PILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1399-1598 |
1.29e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 51.75 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEesLTSGDAfVGGHRISSDV---GKVRQRI---------GYCPQFDA 1466
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD--LTGGGA-PRGARVTGDVtlnGEPLAAIdaprlarlrAVLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1467 LLDHMTGREMLVM----YARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIAL---------IGEP 1533
Cdd:PRK13547 94 PAFAFSAREIVLLgrypHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpphdaAQPP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSP 1598
Cdd:PRK13547 174 RYLLLDEPTAALDLAHQHRLLDTVRRlARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1516-1591 |
1.39e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.81 E-value: 1.39e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116734710 1516 SGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-43 |
1.40e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.48 E-value: 1.40e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 116734710 1 MAVLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLR 43
Cdd:TIGR01257 1 MGFLRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLR 43
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
540-746 |
1.60e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 51.75 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 540 RVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPT--------SGRAYISGYEISQ-DMVQIRKSLGL 610
Cdd:PRK13547 8 HVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAiDAPRLARLRAV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 611 CPQHDILFDNLTVAEHL----YFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIAL------- 679
Cdd:PRK13547 88 LPQAAQPAFAFSAREIVllgrYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpph 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734710 680 --IAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTI-VLT-THFMDEADLLGDRIAIMAKGELQCCGS 746
Cdd:PRK13547 168 daAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLgVLAiVHDPNLAARHADRIAMLADGAIVAHGA 238
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1402-1591 |
1.98e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 50.55 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGhrissdvgkvrqRIGYCPQFdALLDHMTGREMLVMYA 1481
Cdd:cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQE-PWIQNGTIRENILFGK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1482 RLRgiPERhigacVENTLRGLLLEPHANKLVR-----------TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDP-VA 1549
Cdd:cd03250 91 PFD--EER-----YEKVIKACALEPDLEILPDgdlteigekgiNLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAhVG 163
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 116734710 1550 RRLLWDTVARARESGKAIIITSHSMEECEAlCTRLAIMVQGQ 1591
Cdd:cd03250 164 RHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
1398-1572 |
2.07e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 52.67 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDvgkvrQRIGYCPQFDA------LLDHM 1471
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE-----QPEDYRKLFSAvftdfhLFDQL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1472 TGREmlvmyarlrGIPERHigACVENTLRGL----LLEPHANKLVRT-YSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:PRK10522 413 LGPE---------GKPANP--ALVEKWLERLkmahKLELEDGRISNLkLSKGQKKRLALLLALAEERDILLLDEWAADQD 481
|
170 180
....*....|....*....|....*..
gi 116734710 1547 PVARRLLW-DTVARARESGKAIIITSH 1572
Cdd:PRK10522 482 PHFRREFYqVLLPLLQEMGKTIFAISH 508
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1395-1572 |
2.18e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.33 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1395 PLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGR 1474
Cdd:PRK13540 15 PLL--QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1475 EMLvmyarLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLW 1554
Cdd:PRK13540 93 ENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
|
170
....*....|....*...
gi 116734710 1555 DTVARARESGKAIIITSH 1572
Cdd:PRK13540 168 TKIQEHRAKGGAVLLTSH 185
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
554-696 |
2.77e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 52.26 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 554 LNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayisgYEISQDMVQIRksLGLCPQHDI---LFDNLT-----VAE 625
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-----IIYEQDLIVAR--LQQDPPRNVegtVYDFVAegieeQAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 626 HLYFYAQLKGLSRQKCPEE-VKQMLHI---IGLEDKWNSRSRF-----------------LSGGMRRKLSIGIALIAGSK 684
Cdd:PRK11147 97 YLKRYHDISHLVETDPSEKnLNELAKLqeqLDHHNLWQLENRInevlaqlgldpdaalssLSGGWLRKAALGRALVSNPD 176
|
170
....*....|..
gi 116734710 685 VLILDEPTSGMD 696
Cdd:PRK11147 177 VLLLDEPTNHLD 188
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
552-690 |
3.23e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 51.72 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 552 LNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEIS-QDMVQIRkslglcpQH------DI-LFDnltv 623
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTaDNREAYR-------QLfsavfsDFhLFD---- 419
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 624 aeHLYfyaqlkGLSRQKCPEEVKQMLHIIGLEDKWNSRS-RF----LSGGMRRKLSIGIALIAGSKVLILDE 690
Cdd:COG4615 420 --RLL------GLDGEADPARARELLERLELDHKVSVEDgRFsttdLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
549-740 |
5.39e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 50.24 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 549 VRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisqdmvqirkSLGLCPQHDILFDNlTVAEHLY 628
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSSQFSWIMPG-TIKENII 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 629 F---YAQLKGLSRQKC----------PEEVKQMLHIIGLEdkwnsrsrfLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Cdd:cd03291 120 FgvsYDEYRYKSVVKAcqleeditkfPEKDNTVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 696 DAISRRAIWD-LLQRQKSDRTIVLTTHFMDEADlLGDRIAIMAKGE 740
Cdd:cd03291 191 DVFTEKEIFEsCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1409-1546 |
5.93e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 51.26 E-value: 5.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1409 GECFGLLGFNGAGKTTTFKMLTGEeslTSGDAFVGGHRISSD-------VGKVRQRIGYCPQFDALLDHMTGREMLVMYA 1481
Cdd:TIGR00956 87 GELTVVLGRPGSGCSTLLKTIASN---TDGFHIGVEGVITYDgitpeeiKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1482 RLRGIPER-----------HIGACVENTLrGLllePH------ANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTG 1544
Cdd:TIGR00956 164 RCKTPQNRpdgvsreeyakHIADVYMATY-GL---SHtrntkvGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239
|
..
gi 116734710 1545 MD 1546
Cdd:TIGR00956 240 LD 241
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
532-696 |
6.13e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.05 E-value: 6.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 532 IKHLSKVFrvgnKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRayISGYEISqdmvqirkSLGLC 611
Cdd:PRK15064 322 VENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT--VKWSENA--------NIGYY 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 612 PQ-HDILFDN-LTVAEHLYFYAQlkglsrqkcPEEVKQMLH-IIGL----EDKWNSRSRFLSGGMRRKLSIGIALIAGSK 684
Cdd:PRK15064 388 AQdHAYDFENdLTLFDWMSQWRQ---------EGDDEQAVRgTLGRllfsQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458
|
170
....*....|..
gi 116734710 685 VLILDEPTSGMD 696
Cdd:PRK15064 459 VLVMDEPTNHMD 470
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
552-756 |
6.98e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.10 E-value: 6.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 552 LNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGyeisqdmvqirkSLGLCPQHDILfDNLTVAEHLYFYA 631
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQAWI-QNDSLRENILFGK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 632 QLKGLSRQKCPEEVKQM--LHII--GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL 707
Cdd:TIGR00957 724 ALNEKYYQQVLEACALLpdLEILpsGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 708 QRQK---SDRTIVLTTH---FMDEADLlgdrIAIMAKGELQCCGSSLFLKQKYGA 756
Cdd:TIGR00957 804 IGPEgvlKNKTRILVTHgisYLPQVDV----IIVMSGGKISEMGSYQELLQRDGA 854
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
587-721 |
1.10e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.41 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 587 SGRAYISGYEISQ-DMVQIRKSLGLCPQHDILFdNLTVAEHLYFYAQLKGLsrqkcpEEVKQMLH-------IIGLEDKW 658
Cdd:PTZ00265 1276 SGKILLDGVDICDyNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATR------EDVKRACKfaaidefIESLPNKY 1348
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 659 NSR----SRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQ--RQKSDRTIVLTTH 721
Cdd:PTZ00265 1349 DTNvgpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVdiKDKADKTIITIAH 1417
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1399-1592 |
1.15e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 50.17 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTtFKMltgeeSL--------TSGDAFVGGHRIssDVGKVRQRIgycpqfDALLDH 1470
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTE-LAM-----SVfgrsygrnISGTVFKDGKEV--DVSTVSDAI------DAGLAY 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1471 MT-GREML-----------VMYARLRGIPERHIgacVENTLRGLLLEPHANKL----------VRTYSGGNKRKLSTGIA 1528
Cdd:NF040905 342 VTeDRKGYglnliddikrnITLANLGKVSRRGV---IDENEEIKVAEEYRKKMniktpsvfqkVGNLSGGNQQKVVLSKW 418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1529 LIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQF 1592
Cdd:NF040905 419 LFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRI 482
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
548-735 |
1.17e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 49.79 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 548 AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTS--GRAYISGYE-----ISQD----MVQIRKSLGLCPQhdi 616
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEVcrfkdIRDSealgIVIIHQELALIPY--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 lfdnLTVAEHLYF---YAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTS 693
Cdd:NF040905 93 ----LSIAENIFLgneRAKRGVIDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPTA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116734710 694 GMDAISRRAIWDLLQRQKS-DRTIVLTTHFMDEADLLGDRIAI 735
Cdd:NF040905 169 ALNEEDSAALLDLLLELKAqGITSIIISHKLNEIRRVADSITV 211
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1516-1575 |
1.84e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 48.54 E-value: 1.84e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116734710 1516 SGGNKRKLSTGIALI---GEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSME 1575
Cdd:pfam13304 238 SDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
559-742 |
1.98e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.21 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAyisgyeisqdmvqirkslglcpqhdILFDnltvaehlyfyaqlkglsr 638
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV-------------------------IYID------------------- 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 639 qkcPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQ-------K 711
Cdd:smart00382 38 ---GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRlllllksE 114
|
170 180 190
....*....|....*....|....*....|.
gi 116734710 712 SDRTIVLTTHfmDEADLLGDRIAIMAKGELQ 742
Cdd:smart00382 115 KNLTVILTTN--DEKDLGPALLRRRFDRRIV 143
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
665-741 |
3.49e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 47.81 E-value: 3.49e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 665 LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLL--QRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL 741
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLleLQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
534-740 |
3.91e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 48.07 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 534 HLSKV----FRvgnkdraAVRDLNLNLYEGqITVLLGHNGAGKTTTLSMLTGLFPPTSGRAY-----------------I 592
Cdd:COG3593 2 KLEKIkiknFR-------SIKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSRKFdeedfylgddpdlpeieI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 593 SGY-------------------EISQDMVQIRKSLglcpqhDILFDNLT--VAEHLYFYAQLKGLSRQKCPEEVKQMLHI 651
Cdd:COG3593 74 ELTfgsllsrllrlllkeedkeELEEALEELNEEL------KEALKALNelLSEYLKELLDGLDLELELSLDELEDLLKS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 652 IGL--EDKWNSRSRFLSGGMRRKLSIGIALI-------AGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRT-IVLTTH 721
Cdd:COG3593 148 LSLriEDGKELPLDRLGSGFQRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNqVIITTH 227
|
250 260
....*....|....*....|..
gi 116734710 722 ---FMDEADLlgDRIAIMAKGE 740
Cdd:COG3593 228 sphLLSEVPL--ENIRRLRRDS 247
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1397-1576 |
3.95e-05 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 47.08 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESL-----TSGDAFVGGHRISS---DVGKVRQRIGYCPQ----F 1464
Cdd:PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLipgfrVEGKVTFHGKNLYApdvDPVEVRRRIGMVFQkpnpF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1465 DALLdhmtgREMLVMYARLRGIpERHIGACVENTLR-GLLLEPHANKLVRT---YSGGNKRKLSTGIALIGEPAVIFLDE 1540
Cdd:PRK14243 104 PKSI-----YDNIAYGARINGY-KGDMDELVERSLRqAALWDEVKDKLKQSglsLSGGQQQRLCIARAIAVQPEVILMDE 177
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 1541 PSTGMDPVARRLLWDTVARARESgKAIIITSHSMEE 1576
Cdd:PRK14243 178 PCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1394-1590 |
4.03e-05 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 47.00 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1394 VPLlaVDRLSLAVQKGECFGLLGFNGAGKTTT----FKMLTGEESLTSGDAFVGGHRISSdvGKVRQR----IGYCPQ-- 1463
Cdd:PRK10418 16 QPL--VHGVSLTLQRGRVLALVGGSGSGKSLTcaaaLGILPAGVRQTAGRVLLDGKPVAP--CALRGRkiatIMQNPRsa 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1464 FDALL---DHmtGREMLvmyaRLRGIP--ERHIGACV-----ENTLRglLLEPHANKLvrtySGGNKRKLSTGIALIGEP 1533
Cdd:PRK10418 92 FNPLHtmhTH--ARETC----LALGKPadDATLTAALeavglENAAR--VLKLYPFEM----SGGMLQRMMIALALLCEA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVAR-ARESGKAIIITSHSMEECEALCTRLAIMVQG 1590
Cdd:PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESiVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
530-721 |
4.29e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 48.35 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 530 IKIKHLSKVFRVGNKDRAAVRDL----------------NLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYIS 593
Cdd:PRK13545 5 VKFEHVTKKYKMYNKPFDKLKDLffrskdgeyhyalnniSFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 594 GyeiSQDMVQIrkSLGLCPQhdilfdnLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKL 673
Cdd:PRK13545 85 G---SAALIAI--SSGLNGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 116734710 674 SIGIALIAGSKVLILDEPTS-GMDAISRRAIWDLLQRQKSDRTIVLTTH 721
Cdd:PRK13545 153 GFAISVHINPDILVIDEALSvGDQTFTKKCLDKMNEFKEQGKTIFFISH 201
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1383-1572 |
4.77e-05 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 46.33 E-value: 4.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYEQRVPLlAVDRLSLAVQKGECFGLLGFNGAGKTTT----FKMLtgeeSLTSGDAFVGGHRISS-DVGKVRQR 1457
Cdd:cd03244 5 FKNVSLRYRPNLPP-VLKNISFSIKPGEKVGIVGRTGSGKSSLllalFRLV----ELSSGSILIDGVDISKiGLHDLRSR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1458 IGYCPQfDALLDHMTGREMLVMY-----ARLRGIPER-HIGACVENTLRGLLLEPHANKLvrTYSGGNKRKLSTGIALIG 1531
Cdd:cd03244 80 ISIIPQ-DPVLFSGTIRSNLDPFgeysdEELWQALERvGLKEFVESLPGGLDTVVEEGGE--NLSVGQRQLLCLARALLR 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 1532 EPAVIFLDEPSTGMDPVARRLLWDTVaRARESGKAIIITSH 1572
Cdd:cd03244 157 KSKILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAH 196
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1364-1572 |
4.90e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 48.24 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1364 ERTRILAPS------------PDSLLHTPLIIKELSKVYEQRVPLlavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG 1431
Cdd:PRK10636 284 ERMELIAPAhvdnpfhfsfraPESLPNPLLKMEKVSAGYGDRIIL---DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1432 EESLTSGdafvgghrissDVGKVRQ-RIGYCPQFDalLDHMTGREM-LVMYARLrgIPERhigacVENTLRGLL--LEPH 1507
Cdd:PRK10636 361 ELAPVSG-----------EIGLAKGiKLGYFAQHQ--LEFLRADESpLQHLARL--APQE-----LEQKLRDYLggFGFQ 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1508 ANKLV---RTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLwdTVARARESGkAIIITSH 1572
Cdd:PRK10636 421 GDKVTeetRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL--TEALIDFEG-ALVVVSH 485
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
665-738 |
5.34e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.43 E-value: 5.34e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734710 665 LSGGMRRKLSI----GIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQ-KSDRTIVLTTHFMDEADLLgDRIAIMAK 738
Cdd:cd03227 78 LSGGEKELSALalilALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHlVKGAQVIVITHLPELAELA-DKLIHIKK 155
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1383-1576 |
6.14e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 46.57 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1383 IKELSKVYE-QRVpllaVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTS-----GDAFVGGHRISS---DVGK 1453
Cdd:PRK14258 10 VNNLSFYYDtQKI----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYErrvNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1454 VRQRIGYC-PQFDalLDHMTGREMLVMYARLRGI-PERHIGACVENTLRGL-LLEPHANKLVRT---YSGGNKRKLSTGI 1527
Cdd:PRK14258 86 LRRQVSMVhPKPN--LFPMSVYDNVAYGVKIVGWrPKLEIDDIVESALKDAdLWDEIKHKIHKSaldLSGGQQQRLCIAR 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116734710 1528 ALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-ESGKAIIITSHSMEE 1576
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQ 213
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1391-1572 |
6.48e-05 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 47.80 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1391 EQRVPLLavDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS----DVGKV-RQRIGYCPQFD 1465
Cdd:PRK10535 18 EEQVEVL--KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadALAQLrREHFGFIFQRY 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 ALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGM 1545
Cdd:PRK10535 96 HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
|
170 180
....*....|....*....|....*..
gi 116734710 1546 DPVARRLLWDTVARARESGKAIIITSH 1572
Cdd:PRK10535 176 DSHSGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1402-1623 |
1.31e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 46.89 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1402 LSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDAL--------LDHMT 1472
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfGLTDLRRVLSIIPQSPVLfsgtvrfnIDPFS 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1473 GREMLVMYARLrgipER-HIGACVENTLRGLllEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARR 1551
Cdd:PLN03232 1335 EHNDADLWEAL----ERaHIKDVIDRNPFGL--DAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734710 1552 LLWDTVaraRESGKA--IIITSHSMEECEAlCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSlrAKVQSEGQQEA 1623
Cdd:PLN03232 1409 LIQRTI---REEFKSctMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFF--RMVHSTGPANA 1476
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1398-1591 |
1.47e-04 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 46.63 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISS-DVGKVRQRIGYCPQFDALLDHMTGREm 1476
Cdd:TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADyTLASLRRQVALVSQDVVLFNDTIANN- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 lVMYARLRGIPErhigACVENTLRGLLLEPHANKL---VRT--------YSGGNKRKLSTGIALIGEPAVIFLDEPSTGM 1545
Cdd:TIGR02203 426 -IAYGRTEQADR----AEIERALAAAYAQDFVDKLplgLDTpigengvlLSGGQRQRLAIARALLKDAPILILDEATSAL 500
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116734710 1546 DPVARRLLWDTVARAREsGKAIIITSHSMEECEAlCTRLAIMVQGQ 1591
Cdd:TIGR02203 501 DNESERLVQAALERLMQ-GRTTLVIAHRLSTIEK-ADRIVVMDDGR 544
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1414-1546 |
2.51e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.01 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1414 LLGFNGAGKTTTFKMLTGEESLTSGDAFVGghrissdvGKVRQRIGYCPQFDALldHMTGREMLVMYARLRGIPER---- 1489
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTVFRS--------AKVRMAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQklra 609
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 116734710 1490 HIGACveNTLRGLLLEPhanklVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:PLN03073 610 HLGSF--GVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1398-1574 |
5.13e-04 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 43.87 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTT---TF-KMLTGEESL-TSGDAFVGGHRISS---DVGKVRQRIGYCPQ----Fd 1465
Cdd:COG1117 26 ALKDINLDIPENKVTALIGPSGCGKSTllrCLnRMNDLIPGArVEGEILLDGEDIYDpdvDVVELRRRVGMVFQkpnpF- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1466 alldHMTGREMLVMYARLRGI-PERHIGACVENTLRGLLL---------EPhANKLvrtySGGNKRKLStgIA--LIGEP 1533
Cdd:COG1117 105 ----PKSIYDNVAYGLRLHGIkSKSELDEIVEESLRKAALwdevkdrlkKS-ALGL----SGGQQQRLC--IAraLAVEP 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 1534 AVIFLDEPSTGMDPVARRLLWDTVARARESgKAIIITSHSM 1574
Cdd:COG1117 174 EVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNM 213
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
559-733 |
5.14e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 44.78 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 559 GQITVLLGHNGAGKTTTLSMLTG---------LFPPTSGRAYISG-----------YEISQD--MVQIRKSLGLCPQHDi 616
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNeisadggsyTFPGNWQLAWVNQetpalpqpaleYVIDGDreYRQLEAQLHDANERN- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 617 lfDNLTVAehlYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRS-RFLSGGMRRKLSIGIALIAGSKVLILDEPTS-- 693
Cdd:PRK10636 106 --DGHAIA---TIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPvSDFSGGWRMRLNLAQALICRSDLLLLDEPTNhl 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 116734710 694 GMDAIsrraIWdLLQRQKS-DRTIVLTTHFMDEADLLGDRI 733
Cdd:PRK10636 181 DLDAV----IW-LEKWLKSyQGTLILISHDRDFLDPIVDKI 216
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1403-1591 |
7.63e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.47 E-value: 7.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1403 SLAVQKGECFGLLGFNGAGKTTTFK---------------MLTGEESLTSGDAFVGGHRISSDVGKVR-----------Q 1456
Cdd:PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRymamhaidgipkncqILHVEQEVVGDDTTALQCVLNTDIERTQlleeeaqlvaqQ 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1457 RI---------GYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHAN-KLVRTYSGGNKRKLSTG 1526
Cdd:PLN03073 277 RElefetetgkGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQvKATKTFSGGWRMRIALA 356
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1527 IALIGEPAVIFLDEPSTGMDPVArrLLWDTVARARESgKAIIITSHSMEECEALCTRLaIMVQGQ 1591
Cdd:PLN03073 357 RALFIEPDLLLLDEPTNHLDLHA--VLWLETYLLKWP-KTFIVVSHAREFLNTVVTDI-LHLHGQ 417
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
1406-1635 |
9.20e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 42.17 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1406 VQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDafvgghrISSDvgkvRQRIGYCPQFDALldhmtgremlvmyarlrg 1485
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-------DEWD----GITPVYKPQYIDL------------------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1486 iperhigacventlrglllephanklvrtySGGNKRKLSTGIALIGEPAVIFLDEPSTGMDpVARRLlwdTVARA----- 1560
Cdd:cd03222 73 ------------------------------SGGELQRVAIAAALLRNATFYLFDEPSAYLD-IEQRL---NAARAirrls 118
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734710 1561 RESGKAIIITSHSMEECEALCTRLaIMVQGQfkclgspqhlKSKFGSGyslrakVQSEGQQEALEEFKAFVDLTF 1635
Cdd:cd03222 119 EEGKKTALVVEHDLAVLDYLSDRI-HVFEGE----------PGVYGIA------SQPKGTREGINRFLRGYLITF 176
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1399-1548 |
1.52e-03 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 42.21 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1399 VDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTG-----EESLTSGDAFVGGHRI-SSDVGKVRQRIGYCPQFDALLDHMT 1472
Cdd:PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQDIfKMDVIELRRRVQMVFQIPNPIPNLS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1473 GREMLVMYARLRGI--PERHIGACVENTL-RGLLLEPHANKL---VRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546
Cdd:PRK14247 99 IFENVALGLKLNRLvkSKKELQERVRWALeKAQLWDEVKDRLdapAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178
|
..
gi 116734710 1547 PV 1548
Cdd:PRK14247 179 PE 180
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1398-1591 |
2.44e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 42.38 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTfkmltgeesltsGDAFVgghRISSDVGKVrqrigycpQFDAL-LDHMTGREM 1476
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTT------------GLALL---RLINSQGEI--------WFDGQpLHNLNRRQL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1477 LVMYARLRGI---------PERHIGACVENTLRglLLEPHANKLVRT-----------------------YSGGNKRKLS 1524
Cdd:PRK15134 358 LPVRHRIQVVfqdpnsslnPRLNVLQIIEEGLR--VHQPTLSAAQREqqviavmeevgldpetrhrypaeFSGGQRQRIA 435
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1525 TGIALIGEPAVIFLDEPSTGMD-PVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQ 1591
Cdd:PRK15134 436 IARALILKPSLIILDEPTSSLDkTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
564-746 |
2.89e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.46 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 564 LLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEI-SQDMVQIRKSLGLCPQHDILFDNlTVAEHLYFYAqlkglsrQKCP 642
Cdd:PTZ00243 1341 IVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIgAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL-------EASS 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 643 EEVKQMLHIIGLEDKWNSRS-----RFLSG------GMRRKLSIGIALIA-GSKVLILDEPTSGMDAISRRAIWDLLQRQ 710
Cdd:PTZ00243 1413 AEVWAALELVGLRERVASESegidsRVLEGgsnysvGQRQLMCMARALLKkGSGFILMDEATANIDPALDRQIQATVMSA 1492
|
170 180 190
....*....|....*....|....*....|....*.
gi 116734710 711 KSDRTIVLTTHFMDEADLLgDRIAIMAKGELQCCGS 746
Cdd:PTZ00243 1493 FSAYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGS 1527
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1482-1572 |
3.32e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.04 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1482 RLRGIPERHIGACVENTLRGLLLephanklvrTYSGGNKRKLST----GIALIGEPAVIFLDEPSTGMDPVARRLLWDTV 1557
Cdd:cd03227 54 RRSGVKAGCIVAAVSAELIFTRL---------QLSGGEKELSALalilALASLKPRPLYILDEIDRGLDPRDGQALAEAI 124
|
90
....*....|....*
gi 116734710 1558 ARARESGKAIIITSH 1572
Cdd:cd03227 125 LEHLVKGAQVIVITH 139
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1513-1570 |
3.55e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 42.32 E-value: 3.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 116734710 1513 RTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIIT 1570
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1514-1573 |
3.57e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 40.38 E-value: 3.57e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734710 1514 TYSGGNKR--KLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHS 1573
Cdd:cd03238 87 TLSGGELQrvKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1349-1449 |
6.52e-03 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 41.21 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1349 YTRMpvLpedqdVADERTRILAPSPDSLlhTPLI-IKELSKVYEQRVPLL--------AVDRLSLAVQKGECFGLLGFNG 1419
Cdd:COG4172 252 YTRK--L-----LAAEPRGDPRPVPPDA--PPLLeARDLKVWFPIKRGLFrrtvghvkAVDGVSLTLRRGETLGLVGESG 322
|
90 100 110
....*....|....*....|....*....|
gi 116734710 1420 AGKTTTFKMLTGEESlTSGDAFVGGHRISS 1449
Cdd:COG4172 323 SGKSTLGLALLRLIP-SEGEIRFDGQDLDG 351
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
1414-1573 |
7.07e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 40.34 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1414 LLGFNGAGKTTTFKMLTGEESLTSgdAFVGGHRIS---------SDVGKVRQRIGYCPQFDALLDHMTGREML--VMYAR 1482
Cdd:COG4938 25 LIGPNGSGKSTLIQALLLLLQSNF--IYLPAERSGparlypslvRELSDLGSRGEYTADFLAELENLEILDDKskELLEQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734710 1483 LRGIPERHIGACVENTLRGLLLEphanKLVRTYSGGNKRKL---STGI-----------ALIGEPAVIFLDEPSTGMDPV 1548
Cdd:COG4938 103 VEEWLEKIFPGKVEVDASSDLVR----LVFRPSGNGKRIPLsnvGSGVsellpillallSAAKPGSLLIIEEPEAHLHPK 178
|
170 180
....*....|....*....|....*
gi 116734710 1549 ARRLLWDTVARARESGKAIIITSHS 1573
Cdd:COG4938 179 AQSALAELLAELANSGVQVIIETHS 203
|
|
| |
