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Conserved domains on  [gi|150417967|ref|NP_001092874|]
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sodium channel protein type 5 subunit alpha isoform c [Homo sapiens]

Protein Classification

Na_trans_assoc and Ion_trans domain-containing protein( domain architecture ID 11999294)

protein containing domains Na_trans_cytopl, Na_trans_assoc, Ion_trans, and Na_channel_gate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Na_trans_cytopl pfam11933
Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain ...
507-667 8.47e-71

Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.


:

Pssm-ID: 432199  Cd Length: 163  Bit Score: 234.27  E-value: 8.47e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   507 NHLSLTRGLSRTsmkPRSSRGSIFTFRRR--DLGSEADFADDENSTAGESESHHTSLLVPWP-LRRTSAQGQPSPG-TSA 582
Cdd:pfam11933    1 SLLSIPGSPFSP---RRSSRGSIFSFRGRgrDAGSENDFADDENSTFEDSESRRGSLFVPRRhERRSSYQSQASRSsRSH 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   583 PGHALHGKKNSTVDCNGVVSLLGaGDPEATSPGSHLLRPVMLE--HPPDTTTPSEEPGGPQMLTSQAPCVDGFEEPGARQ 660
Cdd:pfam11933   78 PGLPQNGKRHSTVDCNGVVSLVG-GGPEPTSPGGLLLPEVIIDkaGTGDSTTTTEEELRKRRSSSYQLSMDYLEEPFQRQ 156

                   ....*..
gi 150417967   661 RALSAVS 667
Cdd:pfam11933  157 RAVSAAS 163
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1204-1479 1.17e-67

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


:

Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 228.31  E-value: 1.17e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1204 HSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLlEYADKMFTYVFVLEMLLKWVAYGFKK-YFTNAWCWLDFLIVDVS 1282
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEPLTTVL-EILDYVFTGIFTLEMLLKIIAAGFKKrYFRSPWNILDFVVVLPS 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1283 LVSLVANTLGfaEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGR 1362
Cdd:pfam00520   80 LISLVLSSVG--SLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKT 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1363 CINQTEGDlplnytivnnksqceslnltgelywtkvkVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGyeeqpqwey 1442
Cdd:pfam00520  158 WENPDNGR-----------------------------TNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG--------- 199
                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 150417967  1443 NLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK 1479
Cdd:pfam00520  200 EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTER 236
Na_trans_assoc pfam06512
Sodium ion transport-associated; Members of this family contain a region found exclusively in ...
953-1200 2.92e-67

Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612.


:

Pssm-ID: 428983  Cd Length: 195  Bit Score: 225.69  E-value: 2.92e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   953 DREMNNLQLALARIQRGLRFVKRTTWDFCCGLLRqRPQKPAALA------AQGQLPSCIATpysppppETEKVPPtrKET 1026
Cdd:pfam06512    1 DGEMNNLQIALARIQRGIRFVKSTLRDFCCRLCL-EPQLPEKKPldeskdARSKLTNQIAN-------HTKKAPG--GGG 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1027 RFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESSKQQESQpvsggpeappdsrtwsqvsatassea 1106
Cdd:pfam06512   71 KYELDEGHMDFITNPNLTVCVPIAEGESDLENEEDDDESSQSSDEEKSKQQEQL-------------------------- 124
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1107 easasqadwrqqwkaepqapgcgETPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQA 1186
Cdd:pfam06512  125 -----------------------EDDDSSSSEGSTVDLQDPEEELEKIPEEAEELKEPEDCFTEGCVRRFPCCAVDTTKG 181
                          250
                   ....*....|....
gi 150417967  1187 PGKVWWRLRKTCYH 1200
Cdd:pfam06512  182 PWKIWWNLRKTCYR 195
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1528-1782 2.92e-59

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


:

Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 204.42  E-value: 2.92e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1528 QAFDVTIMFLICLNMVTMMVETDDQSPEKIN-ILAKINLLFVAIFTGECIVKLAALR--HYYFTNSWNIFDFVVVILSIV 1604
Cdd:pfam00520    2 RYFELFILLLILLNTIFLALETYFQPEEPLTtVLEILDYVFTGIFTLEMLLKIIAAGfkKRYFRSPWNILDFVVVLPSLI 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1605 gtvlsDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYV-- 1682
Cdd:pfam00520   82 -----SLVLSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKlk 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1683 KWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPpycdptlpnsngsrgdcgsPAVGILFFTTYIIISFLI 1762
Cdd:pfam00520  157 TWENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG-------------------EFWAYIYFVSFIILGGFL 217
                          250       260
                   ....*....|....*....|
gi 150417967  1763 VVNMYIAIILENFSVATEES 1782
Cdd:pfam00520  218 LLNLFIAVIIDNFQELTERT 237
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
716-927 1.54e-56

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


:

Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 196.72  E-value: 1.54e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   716 DPFTDLTITMCIVLNTLFMALEHYNMTSE-FEEMLQVGNLVFTGIFTAEMTFKIIALDP-YYYFQQGWNIFDSIIVILSL 793
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   794 MELGLSRM---SNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRD 870
Cdd:pfam00520   81 ISLVLSSVgslSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWEN 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 150417967   871 SDSgllPRWHMMDFFHAFLIIFRILCGE-WIETMWDCMEVSGQSLCLLVFLLVMVIGN 927
Cdd:pfam00520  161 PDN---GRTNFDNFPNAFLWLFQTMTTEgWGDIMYDTIDGKGEFWAYIYFVSFIILGG 215
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
130-423 1.55e-54

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


:

Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 190.94  E-value: 1.55e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   130 HSLFNMLIMCTILTNCVFMAQHDPPP-------WTKYVEYTFTAIYTFESLVKILARGFCLHaftFLRDPWNWLDFSVII 202
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQpeeplttVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVL 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   203 MAYVS----ENIKLGNLSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGnlrh 278
Cdd:pfam00520   78 PSLISlvlsSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGG---- 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   279 kcvrnftalngtngsveadglvwesldlylsdpenyllkngtsdvllcgnssdagtcpegyrCLKAGENPDHGYTSFDSF 358
Cdd:pfam00520  154 --------------------------------------------------------------KLKTWENPDNGRTNFDNF 171
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 150417967   359 AWAFLALFRLMTQDCWERLYQQTLRSAG-KIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQAT 423
Cdd:pfam00520  172 PNAFLWLFQTMTTEGWGDIMYDTIDGKGeFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERT 237
Na_channel_gate cd13433
Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of ...
1471-1523 7.05e-33

Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of the intracellular linker between domains III and IV of the alpha subunits of voltage-gated sodium channels. It is responsible for fast inactivation of the channel and essential for proper physiological function.


:

Pssm-ID: 240441  Cd Length: 54  Bit Score: 121.52  E-value: 7.05e-33
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 150417967 1471 DNFNQQKKKLGG-QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFD 1523
Cdd:cd13433     1 DNFNQLKKKYGGgLDIFLTESQKKYYNAMKKLGSKKPQKPIPRPKNKFQGFIFD 54
 
Name Accession Description Interval E-value
Na_trans_cytopl pfam11933
Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain ...
507-667 8.47e-71

Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.


Pssm-ID: 432199  Cd Length: 163  Bit Score: 234.27  E-value: 8.47e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   507 NHLSLTRGLSRTsmkPRSSRGSIFTFRRR--DLGSEADFADDENSTAGESESHHTSLLVPWP-LRRTSAQGQPSPG-TSA 582
Cdd:pfam11933    1 SLLSIPGSPFSP---RRSSRGSIFSFRGRgrDAGSENDFADDENSTFEDSESRRGSLFVPRRhERRSSYQSQASRSsRSH 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   583 PGHALHGKKNSTVDCNGVVSLLGaGDPEATSPGSHLLRPVMLE--HPPDTTTPSEEPGGPQMLTSQAPCVDGFEEPGARQ 660
Cdd:pfam11933   78 PGLPQNGKRHSTVDCNGVVSLVG-GGPEPTSPGGLLLPEVIIDkaGTGDSTTTTEEELRKRRSSSYQLSMDYLEEPFQRQ 156

                   ....*..
gi 150417967   661 RALSAVS 667
Cdd:pfam11933  157 RAVSAAS 163
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1204-1479 1.17e-67

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 228.31  E-value: 1.17e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1204 HSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLlEYADKMFTYVFVLEMLLKWVAYGFKK-YFTNAWCWLDFLIVDVS 1282
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEPLTTVL-EILDYVFTGIFTLEMLLKIIAAGFKKrYFRSPWNILDFVVVLPS 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1283 LVSLVANTLGfaEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGR 1362
Cdd:pfam00520   80 LISLVLSSVG--SLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKT 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1363 CINQTEGDlplnytivnnksqceslnltgelywtkvkVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGyeeqpqwey 1442
Cdd:pfam00520  158 WENPDNGR-----------------------------TNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG--------- 199
                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 150417967  1443 NLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK 1479
Cdd:pfam00520  200 EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTER 236
Na_trans_assoc pfam06512
Sodium ion transport-associated; Members of this family contain a region found exclusively in ...
953-1200 2.92e-67

Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612.


Pssm-ID: 428983  Cd Length: 195  Bit Score: 225.69  E-value: 2.92e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   953 DREMNNLQLALARIQRGLRFVKRTTWDFCCGLLRqRPQKPAALA------AQGQLPSCIATpysppppETEKVPPtrKET 1026
Cdd:pfam06512    1 DGEMNNLQIALARIQRGIRFVKSTLRDFCCRLCL-EPQLPEKKPldeskdARSKLTNQIAN-------HTKKAPG--GGG 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1027 RFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESSKQQESQpvsggpeappdsrtwsqvsatassea 1106
Cdd:pfam06512   71 KYELDEGHMDFITNPNLTVCVPIAEGESDLENEEDDDESSQSSDEEKSKQQEQL-------------------------- 124
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1107 easasqadwrqqwkaepqapgcgETPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQA 1186
Cdd:pfam06512  125 -----------------------EDDDSSSSEGSTVDLQDPEEELEKIPEEAEELKEPEDCFTEGCVRRFPCCAVDTTKG 181
                          250
                   ....*....|....
gi 150417967  1187 PGKVWWRLRKTCYH 1200
Cdd:pfam06512  182 PWKIWWNLRKTCYR 195
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1528-1782 2.92e-59

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 204.42  E-value: 2.92e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1528 QAFDVTIMFLICLNMVTMMVETDDQSPEKIN-ILAKINLLFVAIFTGECIVKLAALR--HYYFTNSWNIFDFVVVILSIV 1604
Cdd:pfam00520    2 RYFELFILLLILLNTIFLALETYFQPEEPLTtVLEILDYVFTGIFTLEMLLKIIAAGfkKRYFRSPWNILDFVVVLPSLI 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1605 gtvlsDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYV-- 1682
Cdd:pfam00520   82 -----SLVLSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKlk 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1683 KWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPpycdptlpnsngsrgdcgsPAVGILFFTTYIIISFLI 1762
Cdd:pfam00520  157 TWENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG-------------------EFWAYIYFVSFIILGGFL 217
                          250       260
                   ....*....|....*....|
gi 150417967  1763 VVNMYIAIILENFSVATEES 1782
Cdd:pfam00520  218 LLNLFIAVIIDNFQELTERT 237
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
716-927 1.54e-56

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 196.72  E-value: 1.54e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   716 DPFTDLTITMCIVLNTLFMALEHYNMTSE-FEEMLQVGNLVFTGIFTAEMTFKIIALDP-YYYFQQGWNIFDSIIVILSL 793
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   794 MELGLSRM---SNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRD 870
Cdd:pfam00520   81 ISLVLSSVgslSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWEN 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 150417967   871 SDSgllPRWHMMDFFHAFLIIFRILCGE-WIETMWDCMEVSGQSLCLLVFLLVMVIGN 927
Cdd:pfam00520  161 PDN---GRTNFDNFPNAFLWLFQTMTTEgWGDIMYDTIDGKGEFWAYIYFVSFIILGG 215
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
130-423 1.55e-54

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 190.94  E-value: 1.55e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   130 HSLFNMLIMCTILTNCVFMAQHDPPP-------WTKYVEYTFTAIYTFESLVKILARGFCLHaftFLRDPWNWLDFSVII 202
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQpeeplttVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVL 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   203 MAYVS----ENIKLGNLSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGnlrh 278
Cdd:pfam00520   78 PSLISlvlsSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGG---- 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   279 kcvrnftalngtngsveadglvwesldlylsdpenyllkngtsdvllcgnssdagtcpegyrCLKAGENPDHGYTSFDSF 358
Cdd:pfam00520  154 --------------------------------------------------------------KLKTWENPDNGRTNFDNF 171
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 150417967   359 AWAFLALFRLMTQDCWERLYQQTLRSAG-KIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQAT 423
Cdd:pfam00520  172 PNAFLWLFQTMTTEGWGDIMYDTIDGKGeFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERT 237
Na_channel_gate cd13433
Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of ...
1471-1523 7.05e-33

Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of the intracellular linker between domains III and IV of the alpha subunits of voltage-gated sodium channels. It is responsible for fast inactivation of the channel and essential for proper physiological function.


Pssm-ID: 240441  Cd Length: 54  Bit Score: 121.52  E-value: 7.05e-33
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 150417967 1471 DNFNQQKKKLGG-QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFD 1523
Cdd:cd13433     1 DNFNQLKKKYGGgLDIFLTESQKKYYNAMKKLGSKKPQKPIPRPKNKFQGFIFD 54
PLN03223 PLN03223
Polycystin cation channel protein; Provisional
1608-1787 1.40e-03

Polycystin cation channel protein; Provisional


Pssm-ID: 215637 [Multi-domain]  Cd Length: 1634  Bit Score: 43.78  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967 1608 LSDIIQKYFfspTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVkweag 1687
Cdd:PLN03223 1284 LVDYFQWYM---TLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA----- 1355
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967 1688 iddMFNFQTFANSMLCLFQIttsagwdgLLSPIlntgpPYCDPTLPNSNGSRGdcgspAVGILFFTTYIIISFLIVVNMY 1767
Cdd:PLN03223 1356 ---SVHFSDMTDSINSLFEN--------LLGDI-----TYFNEDLKNLTGLQF-----VVGMIYFYSYNIFVFMILFNFL 1414
                         170       180
                  ....*....|....*....|
gi 150417967 1768 IAIILENFSVATEESTEPLS 1787
Cdd:PLN03223 1415 LAIICDAFGEVKANAAETVS 1434
 
Name Accession Description Interval E-value
Na_trans_cytopl pfam11933
Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain ...
507-667 8.47e-71

Cytoplasmic domain of voltage-gated Na+ ion channel; This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.


Pssm-ID: 432199  Cd Length: 163  Bit Score: 234.27  E-value: 8.47e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   507 NHLSLTRGLSRTsmkPRSSRGSIFTFRRR--DLGSEADFADDENSTAGESESHHTSLLVPWP-LRRTSAQGQPSPG-TSA 582
Cdd:pfam11933    1 SLLSIPGSPFSP---RRSSRGSIFSFRGRgrDAGSENDFADDENSTFEDSESRRGSLFVPRRhERRSSYQSQASRSsRSH 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   583 PGHALHGKKNSTVDCNGVVSLLGaGDPEATSPGSHLLRPVMLE--HPPDTTTPSEEPGGPQMLTSQAPCVDGFEEPGARQ 660
Cdd:pfam11933   78 PGLPQNGKRHSTVDCNGVVSLVG-GGPEPTSPGGLLLPEVIIDkaGTGDSTTTTEEELRKRRSSSYQLSMDYLEEPFQRQ 156

                   ....*..
gi 150417967   661 RALSAVS 667
Cdd:pfam11933  157 RAVSAAS 163
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1204-1479 1.17e-67

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 228.31  E-value: 1.17e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1204 HSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLlEYADKMFTYVFVLEMLLKWVAYGFKK-YFTNAWCWLDFLIVDVS 1282
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEPLTTVL-EILDYVFTGIFTLEMLLKIIAAGFKKrYFRSPWNILDFVVVLPS 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1283 LVSLVANTLGfaEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGR 1362
Cdd:pfam00520   80 LISLVLSSVG--SLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKT 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1363 CINQTEGDlplnytivnnksqceslnltgelywtkvkVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGyeeqpqwey 1442
Cdd:pfam00520  158 WENPDNGR-----------------------------TNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG--------- 199
                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 150417967  1443 NLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK 1479
Cdd:pfam00520  200 EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTER 236
Na_trans_assoc pfam06512
Sodium ion transport-associated; Members of this family contain a region found exclusively in ...
953-1200 2.92e-67

Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612.


Pssm-ID: 428983  Cd Length: 195  Bit Score: 225.69  E-value: 2.92e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   953 DREMNNLQLALARIQRGLRFVKRTTWDFCCGLLRqRPQKPAALA------AQGQLPSCIATpysppppETEKVPPtrKET 1026
Cdd:pfam06512    1 DGEMNNLQIALARIQRGIRFVKSTLRDFCCRLCL-EPQLPEKKPldeskdARSKLTNQIAN-------HTKKAPG--GGG 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1027 RFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESSKQQESQpvsggpeappdsrtwsqvsatassea 1106
Cdd:pfam06512   71 KYELDEGHMDFITNPNLTVCVPIAEGESDLENEEDDDESSQSSDEEKSKQQEQL-------------------------- 124
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1107 easasqadwrqqwkaepqapgcgETPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQA 1186
Cdd:pfam06512  125 -----------------------EDDDSSSSEGSTVDLQDPEEELEKIPEEAEELKEPEDCFTEGCVRRFPCCAVDTTKG 181
                          250
                   ....*....|....
gi 150417967  1187 PGKVWWRLRKTCYH 1200
Cdd:pfam06512  182 PWKIWWNLRKTCYR 195
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
1528-1782 2.92e-59

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 204.42  E-value: 2.92e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1528 QAFDVTIMFLICLNMVTMMVETDDQSPEKIN-ILAKINLLFVAIFTGECIVKLAALR--HYYFTNSWNIFDFVVVILSIV 1604
Cdd:pfam00520    2 RYFELFILLLILLNTIFLALETYFQPEEPLTtVLEILDYVFTGIFTLEMLLKIIAAGfkKRYFRSPWNILDFVVVLPSLI 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1605 gtvlsDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYV-- 1682
Cdd:pfam00520   82 -----SLVLSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKlk 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1683 KWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPpycdptlpnsngsrgdcgsPAVGILFFTTYIIISFLI 1762
Cdd:pfam00520  157 TWENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG-------------------EFWAYIYFVSFIILGGFL 217
                          250       260
                   ....*....|....*....|
gi 150417967  1763 VVNMYIAIILENFSVATEES 1782
Cdd:pfam00520  218 LLNLFIAVIIDNFQELTERT 237
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
716-927 1.54e-56

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 196.72  E-value: 1.54e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   716 DPFTDLTITMCIVLNTLFMALEHYNMTSE-FEEMLQVGNLVFTGIFTAEMTFKIIALDP-YYYFQQGWNIFDSIIVILSL 793
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   794 MELGLSRM---SNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRD 870
Cdd:pfam00520   81 ISLVLSSVgslSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWEN 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 150417967   871 SDSgllPRWHMMDFFHAFLIIFRILCGE-WIETMWDCMEVSGQSLCLLVFLLVMVIGN 927
Cdd:pfam00520  161 PDN---GRTNFDNFPNAFLWLFQTMTTEgWGDIMYDTIDGKGEFWAYIYFVSFIILGG 215
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
130-423 1.55e-54

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 425730 [Multi-domain]  Cd Length: 238  Bit Score: 190.94  E-value: 1.55e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   130 HSLFNMLIMCTILTNCVFMAQHDPPP-------WTKYVEYTFTAIYTFESLVKILARGFCLHaftFLRDPWNWLDFSVII 202
Cdd:pfam00520    1 SRYFELFILLLILLNTIFLALETYFQpeeplttVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVL 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   203 MAYVS----ENIKLGNLSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGnlrh 278
Cdd:pfam00520   78 PSLISlvlsSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGG---- 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967   279 kcvrnftalngtngsveadglvwesldlylsdpenyllkngtsdvllcgnssdagtcpegyrCLKAGENPDHGYTSFDSF 358
Cdd:pfam00520  154 --------------------------------------------------------------KLKTWENPDNGRTNFDNF 171
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 150417967   359 AWAFLALFRLMTQDCWERLYQQTLRSAG-KIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQAT 423
Cdd:pfam00520  172 PNAFLWLFQTMTTEGWGDIMYDTIDGKGeFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERT 237
Na_channel_gate cd13433
Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of ...
1471-1523 7.05e-33

Inactivation gate of the voltage-gated sodium channel alpha subunits; This region is part of the intracellular linker between domains III and IV of the alpha subunits of voltage-gated sodium channels. It is responsible for fast inactivation of the channel and essential for proper physiological function.


Pssm-ID: 240441  Cd Length: 54  Bit Score: 121.52  E-value: 7.05e-33
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 150417967 1471 DNFNQQKKKLGG-QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFD 1523
Cdd:cd13433     1 DNFNQLKKKYGGgLDIFLTESQKKYYNAMKKLGSKKPQKPIPRPKNKFQGFIFD 54
PKD_channel pfam08016
Polycystin cation channel; This family contains the cation channel region of PKD1 and PKD2 ...
1565-1776 1.88e-10

Polycystin cation channel; This family contains the cation channel region of PKD1 and PKD2 proteins.


Pssm-ID: 400395  Cd Length: 424  Bit Score: 65.44  E-value: 1.88e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1565 LLFVAIFTGECIVKLAALRHYYFTNSWNIFDFVVVILSIVGTVLS--------DIIQKYFFSPTLF----RVIRLARIGR 1632
Cdd:pfam08016  217 VVFFLYFVVEEILKIRKHRPSYLRSVWNLLDLAIVILSVVLIVLNiyrdflvdRLIKSVEASPVTFidfdRVAQLDNLYR 296
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967  1633 I-------------LRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWeagiddmfNFQTFAN 1699
Cdd:pfam08016  297 IilaflvfltwlklFKVLRFNKTMSLFTKTLSRAWKDLAGFALMFVIFFFAYAQFGYLLFGTQAP--------NFSNFVK 368
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 150417967  1700 SMLCLFQITTSA-GWDGLLSpilntgppycdptlpnsngsrgdcGSPAVGILFFTTYIIISFLIVVNMYIAIILENFS 1776
Cdd:pfam08016  369 SILTLFRTILGDfGYNEIFS------------------------GNRVLGPLLFLTFVFLVIFILLNLFLAIINDSYV 422
PLN03223 PLN03223
Polycystin cation channel protein; Provisional
1608-1787 1.40e-03

Polycystin cation channel protein; Provisional


Pssm-ID: 215637 [Multi-domain]  Cd Length: 1634  Bit Score: 43.78  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967 1608 LSDIIQKYFfspTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVkweag 1687
Cdd:PLN03223 1284 LVDYFQWYM---TLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA----- 1355
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150417967 1688 iddMFNFQTFANSMLCLFQIttsagwdgLLSPIlntgpPYCDPTLPNSNGSRGdcgspAVGILFFTTYIIISFLIVVNMY 1767
Cdd:PLN03223 1356 ---SVHFSDMTDSINSLFEN--------LLGDI-----TYFNEDLKNLTGLQF-----VVGMIYFYSYNIFVFMILFNFL 1414
                         170       180
                  ....*....|....*....|
gi 150417967 1768 IAIILENFSVATEESTEPLS 1787
Cdd:PLN03223 1415 LAIICDAFGEVKANAAETVS 1434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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