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Conserved domains on  [gi|157823531|ref|NP_001100373|]
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large ribosomal subunit protein uL30m precursor [Rattus norvegicus]

Protein Classification

large ribosomal subunit protein uL30m( domain architecture ID 10108828)

mitochondrial large ribosomal subunit protein uL30m binds the 23SrRNA as well as the 5S rRNA.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 67-120 7.43e-15

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


:

Pssm-ID: 100100  Cd Length: 54  Bit Score: 64.75  E-value: 7.43e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157823531  67 HIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:cd01658    1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54
 
Name Accession Description Interval E-value
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 67-120 7.43e-15

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 64.75  E-value: 7.43e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157823531  67 HIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:cd01658    1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 67-117 1.36e-12

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 58.86  E-value: 1.36e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 157823531   67 HIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLI 117
Cdd:pfam00327   1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 69-119 1.88e-08

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 48.11  E-value: 1.88e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 157823531  69 VTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRI 119
Cdd:COG1841    6 VTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTV 56
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 68-120 2.50e-06

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 42.68  E-value: 2.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157823531   68 IVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:TIGR01308   2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVE 54
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 69-120 1.15e-05

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 40.85  E-value: 1.15e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 157823531  69 VTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:PRK05611   6 ITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVE 57
 
Name Accession Description Interval E-value
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 67-120 7.43e-15

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 64.75  E-value: 7.43e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157823531  67 HIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:cd01658    1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 69-120 5.14e-13

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 60.11  E-value: 5.14e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 157823531  69 VTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:cd00355    2 VTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 67-117 1.36e-12

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 58.86  E-value: 1.36e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 157823531   67 HIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLI 117
Cdd:pfam00327   1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 69-119 1.88e-08

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 48.11  E-value: 1.88e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 157823531  69 VTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRI 119
Cdd:COG1841    6 VTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTV 56
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 68-120 2.50e-06

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 42.68  E-value: 2.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157823531   68 IVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:TIGR01308   2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVE 54
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 69-120 1.15e-05

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 40.85  E-value: 1.15e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 157823531  69 VTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQ 120
Cdd:PRK05611   6 ITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVE 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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