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Conserved domains on  [gi|157817728|ref|NP_001102763|]
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uncharacterized protein C11orf71 homolog [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4687 super family cl24346
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-106 5.81e-34

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


The actual alignment was detected with superfamily member pfam15747:

Pssm-ID: 374073  Cd Length: 120  Bit Score: 113.81  E-value: 5.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157817728    1 MAQNSVSLSAGDQANRMAHRSSQGDLNPSAMAWAMVSGDSFLVTRLDPNQPG--PRPPARPSVRTDRRRVPVGGRSRSRS 78
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILPGpvPRQAVRPSVRTESRRATGGGRSPTRL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 157817728   79 ------------RQGRFSPYPIPGVKLDLLRSVLQQRLVA 106
Cdd:pfam15747  81 ikgrdpdgrnrsRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Name Accession Description Interval E-value
DUF4687 pfam15747
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-106 5.81e-34

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


Pssm-ID: 374073  Cd Length: 120  Bit Score: 113.81  E-value: 5.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157817728    1 MAQNSVSLSAGDQANRMAHRSSQGDLNPSAMAWAMVSGDSFLVTRLDPNQPG--PRPPARPSVRTDRRRVPVGGRSRSRS 78
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILPGpvPRQAVRPSVRTESRRATGGGRSPTRL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 157817728   79 ------------RQGRFSPYPIPGVKLDLLRSVLQQRLVA 106
Cdd:pfam15747  81 ikgrdpdgrnrsRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Name Accession Description Interval E-value
DUF4687 pfam15747
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-106 5.81e-34

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


Pssm-ID: 374073  Cd Length: 120  Bit Score: 113.81  E-value: 5.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157817728    1 MAQNSVSLSAGDQANRMAHRSSQGDLNPSAMAWAMVSGDSFLVTRLDPNQPG--PRPPARPSVRTDRRRVPVGGRSRSRS 78
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILPGpvPRQAVRPSVRTESRRATGGGRSPTRL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 157817728   79 ------------RQGRFSPYPIPGVKLDLLRSVLQQRLVA 106
Cdd:pfam15747  81 ikgrdpdgrnrsRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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