|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
50-449 |
4.03e-33 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 131.59 E-value: 4.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 50 IVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQG 129
Cdd:COG4886 7 SLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 130 LDSLESLLLSSNQLLQIQ-PAHFSQCSNLKELQLHGNHLEYIPDgAFDHLVGLTKLNLGKNSLTHIsPRVFQHLGNLQVL 208
Cdd:COG4886 87 LGLTDLGDLTNLTELDLSgNEELSNLTNLESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 209 RLYENRLTDIPMGtFDGLVNLQELALQQNQIGLLSPGLFhNNHNLQRLYLSNNHISQLPPSvFMQLPQLNRLTLFGNSLK 288
Cdd:COG4886 165 DLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQLT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 289 ELsPGIFGpMPNLRELWLYDNHISSLPDNvfSNLRQLQVLILSRNQISFISPGAFNGLTELreLSLHTNALQDLDGNVFR 368
Cdd:COG4886 242 DL-PELGN-LTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDLKLKELELLLGL--NSLLLLLLLLNLLELLI 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 369 MLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNPWRCDSDILPLRNWLLLNQ 448
Cdd:COG4886 316 LLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLT 395
|
.
gi 288541295 449 P 449
Cdd:COG4886 396 T 396
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
156-455 |
7.00e-33 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 130.82 E-value: 7.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 156 NLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLthisprvFQHLGNLQVLRLYENRLTDIPmGTFDGLVNLQELALQ 235
Cdd:COG4886 73 LLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTDLP-EELANLTNLKELDLS 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 236 QNQIGLLSPGLFhNNHNLQRLYLSNNHISQLPPSVFmQLPQLNRLTLFGNSLKELsPGIFGPMPNLRELWLYDNHISSLP 315
Cdd:COG4886 145 NNQLTDLPEPLG-NLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLP 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 316 DNvFSNLRQLQVLILSRNQISFISpgAFNGLTELRELSLHTNALQDLDGNVFrmLANLQNISLQNNRLRQLPGNIFANVN 395
Cdd:COG4886 222 EP-LANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPPLAN--LTNLKTLDLSNNQLTDLKLKELELLL 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 396 GLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNPWRCDSDILPLRNWLLLNQPRLGTDT 455
Cdd:COG4886 297 GLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLL 356
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
59-429 |
8.12e-30 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 121.96 E-value: 8.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 59 WNAMSLQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLfqgldsleslll 138
Cdd:COG4886 65 LLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEEL------------ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 139 ssnqllqiqpahfSQCSNLKELQLHGNHLEYIPDgAFDHLVGLTKLNLGKNSLTHIsPRVFQHLGNLQVLRLYENRLTDI 218
Cdd:COG4886 133 -------------ANLTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 219 PMgTFDGLVNLQELALQQNQIGLLSPGLfHNNHNLQRLYLSNNHISQLPpsVFMQLPQLNRLTLFGNSLKELSPgiFGPM 298
Cdd:COG4886 198 PE-PLGNLTNLEELDLSGNQLTDLPEPL-ANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPP--LANL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 299 PNLRELWLYDNHISSLPDNVFSNLRQLQVLIL----SRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQ 374
Cdd:COG4886 272 TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLllllLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLT 351
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 288541295 375 NISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDN 429
Cdd:COG4886 352 LLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLA 406
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
63-366 |
1.33e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 85.37 E-value: 1.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 63 SLQILNTHITELNEsPFLNISALIALRIEKNELSRItPGAFRNLGSLRYLSLANNKLQVLPiglfqgldsleslllssnq 142
Cdd:COG4886 140 ELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITDLP------------------- 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 143 llqiqpAHFSQCSNLKELQLHGNHLEYIPDgAFDHLVGLTKLNLGKNSLTHISprVFQHLGNLQVLRLYENRLTDIPmgT 222
Cdd:COG4886 199 ------EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLP--P 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 223 FDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLR 302
Cdd:COG4886 268 LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLL 347
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 288541295 303 ELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNV 366
Cdd:COG4886 348 ALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAV 411
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
81-407 |
1.81e-15 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 79.89 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 81 NISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQ-VLPIGLFQGLDSLESLLLSSNQLLQIqPAHFSQCSNLKE 159
Cdd:PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSgEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQY 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 160 LQLHGNHLE-YIPDGAFDhLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLT-DIPMGtFDGLVNLQELALQQN 237
Cdd:PLN00113 265 LFLYQNKLSgPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTgKIPVA-LTSLPRLQVLQLWSN 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 238 QIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDN 317
Cdd:PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 318 VFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNA----LQDLDGNvfrmlANLQNISLQNNRLRQLPGNIFAN 393
Cdd:PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKffggLPDSFGS-----KRLENLDLSRNQFSGAVPRKLGS 497
|
330
....*....|....
gi 288541295 394 VNGLMAIQLQNNQL 407
Cdd:PLN00113 498 LSELMQLKLSENKL 511
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
151-357 |
2.61e-15 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 75.21 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 151 FSQCSNLKELQLHGNHLEYIPDgaFDHLVGLTKLNLGKNSLTHIsprvfqhlgnlqvlrlyENrltdipmgtFDGLVNLQ 230
Cdd:cd21340 20 LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKI-----------------EN---------LENLVNLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 231 ELALQQNQIGLLSpGLfHNNHNLQRLYLSNNhisQLPPSvfmqlpqlNRLTLFGNSLKELSpgifgpmPNLRELWLYDNH 310
Cdd:cd21340 72 KLYLGGNRISVVE-GL-ENLTNLEELHIENQ---RLPPG--------EKLTFDPRSLAALS-------NSLRVLNISGNN 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 288541295 311 ISSLPDnvFSNLRQLQVLILSRNQISFISP--GAFNGLTELRELSLHTN 357
Cdd:cd21340 132 IDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGN 178
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
83-407 |
1.18e-14 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 77.58 E-value: 1.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 83 SALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKL--QV-----------------------LPIGLFQGLDSLESLL 137
Cdd:PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLvgQIprelgqmkslkwiylgynnlsgeIPYEIGGLTSLNHLDL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 138 LSSNQLLQIqPAHFSQCSNLKELQLHGNHLE-YIPDGAFDhLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLT 216
Cdd:PLN00113 244 VYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSgPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 217 -DIPMG---------------TFDGLV--------NLQELALQQNQI------GLLSPG------LFHNN---------- 250
Cdd:PLN00113 322 gKIPVAltslprlqvlqlwsnKFSGEIpknlgkhnNLTVLDLSTNNLtgeipeGLCSSGnlfkliLFSNSlegeipkslg 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 251 --HNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHIS-SLPDnvFSNLRQLQV 327
Cdd:PLN00113 402 acRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFgGLPD--SFGSKRLEN 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 328 LILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLR-QLPGNiFANVNGLMAIQLQNNQ 406
Cdd:PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSgQIPAS-FSEMPVLSQLDLSQNQ 558
|
.
gi 288541295 407 L 407
Cdd:PLN00113 559 L 559
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
93-407 |
4.61e-14 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 75.65 E-value: 4.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 93 NELSRITPGA-FRNLGSLRYLSLANNKLQ-VLPIGLFQGLDSLESLLLSSNQLLqiqPAHFSQCSNLKELQLHGNHLE-Y 169
Cdd:PLN00113 103 NQLSGPIPDDiFTTSSSLRYLNLSNNNFTgSIPRGSIPNLETLDLSNNMLSGEI---PNDIGSFSSLKVLDLGGNVLVgK 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 170 IPdGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRL-YENRLTDIPMgTFDGLVNLQELALQQNQIGLLSPGLFH 248
Cdd:PLN00113 180 IP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLgYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLG 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 249 NNHNLQRLYLSNNHIS-QLPPSVFmQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQV 327
Cdd:PLN00113 258 NLKNLQYLFLYQNKLSgPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 328 LILSRNQISFISPGAFNGLTELRELSLHTNALQDL-------DGNVFRMlanlqnISLQNNRLRQLPGNIFAnVNGLMAI 400
Cdd:PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEipeglcsSGNLFKL------ILFSNSLEGEIPKSLGA-CRSLRRV 409
|
....*..
gi 288541295 401 QLQNNQL 407
Cdd:PLN00113 410 RLQDNSF 416
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
181-381 |
9.86e-14 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 70.59 E-value: 9.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 181 LTKLNLGKNSLTHISprVFQHLGNLQVLRLYENRLTDIPmgtfdglvNLqelalqqnqigllspglfHNNHNLQRLYLSN 260
Cdd:cd21340 4 ITHLYLNDKNITKID--NLSLCKNLKVLYLYDNKITKIE--------NL------------------EFLTNLTHLYLQN 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 261 NHISQLPPsvFMQLPQLNRLTLFGNSLKELSpGIFGPmPNLRELwlydnHIS--------SL---PDNVFSNLRQLQVLI 329
Cdd:cd21340 56 NQIEKIEN--LENLVNLKKLYLGGNRISVVE-GLENL-TNLEEL-----HIEnqrlppgeKLtfdPRSLAALSNSLRVLN 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 288541295 330 LSRNQISFISPgaFNGLTELRELSLHTNALQDLD--GNVFRMLANLQNISLQNN 381
Cdd:cd21340 127 ISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEelLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
155-215 |
4.53e-12 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 61.39 E-value: 4.53e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 288541295 155 SNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRL 215
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
180-239 |
4.86e-12 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 61.00 E-value: 4.86e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 180 GLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQI 239
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
299-359 |
7.39e-12 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 60.62 E-value: 7.39e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 288541295 299 PNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNAL 359
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
204-263 |
1.33e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 59.85 E-value: 1.33e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 204 NLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHI 263
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
228-287 |
3.60e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 58.69 E-value: 3.60e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 228 NLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSL 287
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
145-428 |
5.43e-11 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 65.64 E-value: 5.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 145 QIQPAHFsQCSNLKELQLHGNHLEY-IPDGAFDHLVGLTKLNLGKNSLTHISPRVFqhLGNLQVLRLYENRLT-DIP--M 220
Cdd:PLN00113 84 KISSAIF-RLPYIQTINLSNNQLSGpIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSgEIPndI 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 221 GTFDglvNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPN 300
Cdd:PLN00113 161 GSFS---SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 301 LRELWL-YDNHISSLPDNvFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQdldGNVFRMLANLQNISL- 378
Cdd:PLN00113 238 LNHLDLvYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS---GEIPELVIQLQNLEIl 313
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 288541295 379 ---QNNRLRQLPGNIfANVNGLMAIQLQNNQLENlplGIFDHLGKLCELRLYD 428
Cdd:PLN00113 314 hlfSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSG---EIPKNLGKHNNLTVLD 362
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
323-383 |
9.76e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 57.53 E-value: 9.76e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 288541295 323 RQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRL 383
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
150-285 |
1.35e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 61.34 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 150 HFSQCSNLKELQLHGNHLEYIPDgaFDHLVGLTKLNLGKNSLTHISPrvFQHLGNLQVLRLYENRLtdiPMG---TFD-- 224
Cdd:cd21340 41 NLEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIENQRL---PPGeklTFDpr 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 288541295 225 ---GLVN-LQELALQQNQIGLLSPglFHNNHNLQRLYLSNNHISQLPP--SVFMQLPQLNRLTLFGN 285
Cdd:cd21340 114 slaALSNsLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGN 178
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
81-359 |
5.49e-10 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 62.56 E-value: 5.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 81 NISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQ-VLPIGLFQGLDSLESLLLSSNQLLQIqPAHFSQCSNLKE 159
Cdd:PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTgKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTV 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 160 LQLHGNHLE-YIPDGAFDHlVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLT----------------DIPMGT 222
Cdd:PLN00113 361 LDLSTNNLTgEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSgelpseftklplvyflDISNNN 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 223 FDGLVN--------LQELALQQNQIGLLSPGLFHNNhNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGI 294
Cdd:PLN00113 440 LQGRINsrkwdmpsLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 288541295 295 FGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNAL 359
Cdd:PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
169-411 |
1.02e-09 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 61.64 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 169 YIPDGafdhlvgLTKLNLGKNSLTHIsPRVFQhlGNLQVLRLYENRLTDIPMGTFDglvNLQELALQQNQIGLLSPglfH 248
Cdd:PRK15370 196 CIPEQ-------ITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSIPATLPD---TIQEMELSINRITELPE---R 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 249 NNHNLQRLYLSNNHISQLPPSvfmqLPQlnrltlfgnslkelspgifgpmpNLRELWLYDNHISSLPDNVFSNLRQLQVL 328
Cdd:PRK15370 260 LPSALQSLDLFHNKISCLPEN----LPE-----------------------ELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 329 ilsRNQISFIsPGAFNglTELRELSLHTNALQDLDGNvfrMLANLQNISLQNNRLRQLPGNIFANVNGLmaiQLQNNQLE 408
Cdd:PRK15370 313 ---SNSLTAL-PETLP--PGLKTLEAGENALTSLPAS---LPPELQVLDVSKNQITVLPETLPPTITTL---DVSRNALT 380
|
...
gi 288541295 409 NLP 411
Cdd:PRK15370 381 NLP 383
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
252-311 |
1.35e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 54.07 E-value: 1.35e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 252 NLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHI 311
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
157-412 |
1.51e-09 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 60.95 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 157 LKELQLHGNHLEYIPDGAfdhlVGLTKLNLGKNSLTHIsPRVFQHLGNLQVlrlYENRLTDIPMGTfdglVNLQELALQQ 236
Cdd:PRK15387 244 LRTLEVSGNQLTSLPVLP----PGLLELSIFSNPLTHL-PALPSGLCKLWI---FGNQLTSLPVLP----PGLQELSVSD 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 237 NQIGLLsPGLfhnNHNLQRLYLSNNHISQLPpsvfmQLPQ-LNRLTLFGNSLKELSPgifgpMPN-LRELWLYDNHISSL 314
Cdd:PRK15387 312 NQLASL-PAL---PSELCKLWAYNNQLTSLP-----TLPSgLQELSVSDNQLASLPT-----LPSeLYKLWAYNNRLTSL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 315 PdNVFSNLRQlqvLILSRNQISFIS--PgafnglTELRELSLHTNALQDLDgnvfRMLANLQNISLQNNRLRQLPGNIFa 392
Cdd:PRK15387 378 P-ALPSGLKE---LIVSGNRLTSLPvlP------SELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPESLI- 442
|
250 260
....*....|....*....|
gi 288541295 393 NVNGLMAIQLQNNQLENLPL 412
Cdd:PRK15387 443 HLSSETTVNLEGNPLSERTL 462
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
63-309 |
1.71e-09 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 59.29 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 63 SLQILNTHITELNESP---------FLNISALIALRIEKNELSRITPGAFRNL---GSLRYLSLANNKLQVLPIGLfqgl 130
Cdd:cd00116 52 SLKELCLSLNETGRIPrglqsllqgLTKGCGLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLGDRGLRL---- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 131 dsleslllssnqllqIQPAHFSQCSNLKELQLHGNHLEYIP----DGAFDHLVGLTKLNLGKNSLTHISPRV----FQHL 202
Cdd:cd00116 128 ---------------LAKGLKDLPPALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIGDAGIRAlaegLKAN 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 203 GNLQVLRLYENRLTDIPM----GTFDGLVNLQELALQQNQIGL-----LSPGLFHNNHNLQRLYLSNNHISQlppSVFMQ 273
Cdd:cd00116 193 CNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDagaaaLASALLSPNISLLTLSLSCNDITD---DGAKD 269
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 288541295 274 L-------PQLNRLTLFGNSLKE-----LSPGIFGPMPNLRELWLYDN 309
Cdd:cd00116 270 LaevlaekESLLELDLRGNKFGEegaqlLAESLLEPGNELESLWVKDD 317
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
275-335 |
1.91e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 53.68 E-value: 1.91e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 288541295 275 PQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQI 335
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
277-430 |
6.61e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 56.33 E-value: 6.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 277 LNRLT---LFGNSLKELspGIFGPMPNLRELWLYDNHISSLP--------------DNV------FSNLRQLQVLILSRN 333
Cdd:cd21340 1 LKRIThlyLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIEnlefltnlthlylqNNQiekienLENLVNLKKLYLGGN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 334 QISFISpgAFNGLTELRELSLhtnALQDLD-GNVF----RMLANLQNiSLQ-----NNRLRQLpgNIFANVNGLMAIQLQ 403
Cdd:cd21340 79 RISVVE--GLENLTNLEELHI---ENQRLPpGEKLtfdpRSLAALSN-SLRvlnisGNNIDSL--EPLAPLRNLEQLDAS 150
|
170 180
....*....|....*....|....*....
gi 288541295 404 NNQLENLP--LGIFDHLGKLCELRLYDNP 430
Cdd:cd21340 151 NNQISDLEelLDLLSSWPSLRELDLTGNP 179
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
157-383 |
1.85e-08 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 56.21 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 157 LKELQLHGNHLEYIPDG------AFDHLVGLTKLNLGKNSLTHISPRVFQHLgnlqvLRLYenrltdipmgtfdglvNLQ 230
Cdd:cd00116 53 LKELCLSLNETGRIPRGlqsllqGLTKGCGLQELDLSDNALGPDGCGVLESL-----LRSS----------------SLQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 231 ELALQQNQIG-----LLSPGLFHNNHNLQRLYLSNNHISQLP----PSVFMQLPQLNRLTLFGNSLKElsPGI------F 295
Cdd:cd00116 112 ELKLNNNGLGdrglrLLAKGLKDLPPALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIGD--AGIralaegL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 296 GPMPNLRELWLYDNHISSLPD----NVFSNLRQLQVLILSRNQISF-----ISPGAFNGLTELRELSLHTNALQDLDG-N 365
Cdd:cd00116 190 KANCNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDagaaaLASALLSPNISLLTLSLSCNDITDDGAkD 269
|
250 260
....*....|....*....|.
gi 288541295 366 VFRMLAN---LQNISLQNNRL 383
Cdd:cd00116 270 LAEVLAEkesLLELDLRGNKF 290
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
155-335 |
6.70e-08 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 55.47 E-value: 6.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 155 SNLKELQLHGNHLEYIPDGAFDhlvGLTKLNLGKNSLTHIS---PRVFQHL---------------GNLQVLRLYENRLT 216
Cdd:PRK15370 220 GNIKTLYANSNQLTSIPATLPD---TIQEMELSINRITELPerlPSALQSLdlfhnkisclpenlpEELRYLSVYDNSIR 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 217 DIPMGTFDGLVnlqELALQQNQIGLLSPGLfhnNHNLQRLYLSNNHISQLPPSVFMQLPQL----NRLTLfgnsLKELSP 292
Cdd:PRK15370 297 TLPAHLPSGIT---HLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPASLPPELQVLdvskNQITV----LPETLP 366
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 288541295 293 gifgpmPNLRELWLYDNHISSLPDNVFSNLRQLQVlilSRNQI 335
Cdd:PRK15370 367 ------PTITTLDVSRNALTNLPENLPAALQIMQA---SRNNL 400
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
60-119 |
3.14e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.52 E-value: 3.14e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 60 NAMSLQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKL 119
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
108-191 |
1.48e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.59 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 108 SLRYLSLANNKLQVLPIGLFQGldsleslllssnqllqiqpahfsqCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLG 187
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKG------------------------LSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLS 57
|
....
gi 288541295 188 KNSL 191
Cdd:pfam13855 58 GNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
67-352 |
1.67e-06 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 51.24 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 67 LNTHITEL--NESPFLNISALIALRIEKNELS--RITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGldsleslllssnq 142
Cdd:PRK15370 218 LQGNIKTLyaNSNQLTSIPATLPDTIQEMELSinRITELPERLPSALQSLDLFHNKISCLPENLPEE------------- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 143 llqiqpahfsqcsnLKELQLHGNHLEYIPdgafDHL-VGLTKLNLGKNSLTHIsPRVFQHlgNLQVLRLYENRLTDIPMG 221
Cdd:PRK15370 285 --------------LRYLSVYDNSIRTLP----AHLpSGITHLNVQSNSLTAL-PETLPP--GLKTLEAGENALTSLPAS 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 222 TFDGlvnLQELALQQNQIGLLSPGLfhnNHNLQRLYLSNNHISQLPPSV--FMQLPQLNRLTLFgnSLKELSPGIFGPMP 299
Cdd:PRK15370 344 LPPE---LQVLDVSKNQITVLPETL---PPTITTLDVSRNALTNLPENLpaALQIMQASRNNLV--RLPESLPHFRGEGP 415
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 288541295 300 NLRELWLYDNHISslpDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELREL 352
Cdd:PRK15370 416 QPTRIIVEYNPFS---ERTIQNMQRLMSSVGYQGPRVLFAMGDFSIVRVTRPL 465
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
372-430 |
2.28e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 42.13 E-value: 2.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 288541295 372 NLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNP 430
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
88-167 |
2.49e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 42.13 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 88 LRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPiglfqgldsleslllssnqllqiqPAHFSQCSNLKELQLHGNHL 167
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLS------------------------PGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_5 |
pfam13306 |
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
151-278 |
3.59e-05 |
|
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 43.69 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 151 FSQCsNLKELQLhGNHLEYIPDGAFDHLVGLTKLNLGkNSLTHISPRVFQHLgNLQVLRLYENrLTDIPMGTFDGLVNLQ 230
Cdd:pfam13306 8 FYNC-SLTSITI-PSSLTSIGEYAFSNCTSLKSITLP-SSLTSIGSYAFYNC-SLTSITIPSS-LTSIGEYAFSNCSNLK 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 288541295 231 ELALQQN--QIGllsPGLFHNNhNLQRLYLSNNhISQLPPSVFMQLPQLN 278
Cdd:pfam13306 83 SITLPSNltSIG---SYAFSNC-SLKSITIPSS-VTTIGSYAFSNCSNLK 127
|
|
| PCC |
TIGR00864 |
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ... |
402-473 |
5.64e-05 |
|
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.
Pssm-ID: 188093 [Multi-domain] Cd Length: 2740 Bit Score: 46.61 E-value: 5.64e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 288541295 402 LQNNQLENLPLGIFDHLGKLCELRLYDNPWRCDSDILPLRNWLLLNQPRLGTDTVPVCFSPANVRGQSLIII 473
Cdd:TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGI 73
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
157-473 |
1.91e-04 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 44.48 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 157 LKELQLHG-NHLEYIPDGAfdHLVGLTKLNLGKNSLTHISPRVFQhlgNLQVLRLYENRLTDIPMGTfdGLVNLQELALQ 235
Cdd:PLN03210 683 LEDLDMSRcENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDIST---NISWLDLDETAIEEFPSNL--RLENLDELILC 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 236 QNQIG-------LLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFG-NSLKELSPGIfgpmpNLRELWLY 307
Cdd:PLN03210 756 EMKSEklwervqPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENcINLETLPTGI-----NLESLESL 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 308 D-NHISSL---PDnVFSNLRQlqvLILSRnqisfispgafnglTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRL 383
Cdd:PLN03210 831 DlSGCSRLrtfPD-ISTNISD---LNLSR--------------TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 384 RQLPGNIFANVNGLMAIQLQNNQLE--NLPLGIFDHLGKLCELRLYdNPWRCDSDILpLRNWLLLNQPRLGTDTVPVCFS 461
Cdd:PLN03210 893 KHLETVDFSDCGALTEASWNGSPSEvaMATDNIHSKLPSTVCINFI-NCFNLDQEAL-LQQQSIFKQLILSGEEVPSYFT 970
|
330
....*....|..
gi 288541295 462 PANVrGQSLIII 473
Cdd:PLN03210 971 HRTT-GASLTNI 981
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
83-269 |
1.39e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 41.76 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 83 SALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQvlpiglfqGLDSLESLLLSSNQLLQIQPAHF-------SQCS 155
Cdd:PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ--------GRINSRKWDMPSLQMLSLARNKFfgglpdsFGSK 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 156 NLKELQLHGNHL-EYIPDGaFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLT-DIPMGtFDGLVNLQELA 233
Cdd:PLN00113 476 RLENLDLSRNQFsGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSgQIPAS-FSEMPVLSQLD 553
|
170 180 190
....*....|....*....|....*....|....*..
gi 288541295 234 LQQNQIGLLSPGLFHNNHNLQRLYLSNNHI-SQLPPS 269
Cdd:PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLhGSLPST 590
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
429-468 |
1.54e-03 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 36.64 E-value: 1.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 288541295 429 NPWRCDSDILPLRNWLLLNQPRLGTDTvPVCFSPANVRGQ 468
Cdd:smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVD-LRCASPSSLRGP 39
|
|
| LRR |
smart00370 |
Leucine-rich repeats, outliers; |
298-321 |
1.91e-03 |
|
Leucine-rich repeats, outliers;
Pssm-ID: 197688 [Multi-domain] Cd Length: 24 Bit Score: 35.79 E-value: 1.91e-03
|
| LRR_TYP |
smart00369 |
Leucine-rich repeats, typical (most populated) subfamily; |
298-321 |
1.91e-03 |
|
Leucine-rich repeats, typical (most populated) subfamily;
Pssm-ID: 197687 [Multi-domain] Cd Length: 24 Bit Score: 35.79 E-value: 1.91e-03
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
299-340 |
3.26e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 35.68 E-value: 3.26e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 288541295 299 PNLRELWLYDNHISSLPdnVFSNLRQLQVLILSRN-QISFISP 340
Cdd:pfam12799 1 PNLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSD 41
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
249-428 |
4.89e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.83 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 249 NNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPG-IFGPMPNLRELWLYDNHIS-SLPDNVFSNLRQLQ 326
Cdd:PLN00113 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDdIFTTSSSLRYLNLSNNNFTgSIPRGSIPNLETLD 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 288541295 327 vliLSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNrlrQLPGNIFANVNGLMAIQLQNNQ 406
Cdd:PLN00113 147 ---LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---QLVGQIPRELGQMKSLKWIYLG 220
|
170 180
....*....|....*....|..
gi 288541295 407 LENLPLGIFDHLGKLCELRLYD 428
Cdd:PLN00113 221 YNNLSGEIPYEIGGLTSLNHLD 242
|
|
| LRR |
smart00370 |
Leucine-rich repeats, outliers; |
251-271 |
6.51e-03 |
|
Leucine-rich repeats, outliers;
Pssm-ID: 197688 [Multi-domain] Cd Length: 24 Bit Score: 34.25 E-value: 6.51e-03
|
| LRR_TYP |
smart00369 |
Leucine-rich repeats, typical (most populated) subfamily; |
251-271 |
6.51e-03 |
|
Leucine-rich repeats, typical (most populated) subfamily;
Pssm-ID: 197687 [Multi-domain] Cd Length: 24 Bit Score: 34.25 E-value: 6.51e-03
|
| LRR |
smart00370 |
Leucine-rich repeats, outliers; |
322-345 |
8.49e-03 |
|
Leucine-rich repeats, outliers;
Pssm-ID: 197688 [Multi-domain] Cd Length: 24 Bit Score: 33.86 E-value: 8.49e-03
|
| LRR_TYP |
smart00369 |
Leucine-rich repeats, typical (most populated) subfamily; |
322-345 |
8.49e-03 |
|
Leucine-rich repeats, typical (most populated) subfamily;
Pssm-ID: 197687 [Multi-domain] Cd Length: 24 Bit Score: 33.86 E-value: 8.49e-03
|
|