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Conserved domains on  [gi|219521826|ref|NP_001137139|]
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zinc finger BED domain-containing protein 5 [Homo sapiens]

Protein Classification

zinc finger BED domain-containing protein( domain architecture ID 4190)

zinc finger BED domain-containing protein (ZBED) may function as a transcriptional regulator

Gene Ontology:  GO:0046872|GO:0003677
PubMed:  10973053|23533661

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-BED super family cl02703
BED zinc finger;
117-160 5.44e-03

BED zinc finger;


The actual alignment was detected with superfamily member smart00614:

Pssm-ID: 445891 [Multi-domain]  Cd Length: 50  Bit Score: 35.48  E-value: 5.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 219521826   117 FGFTYFGNRDAPHAQCVLCKKILS-NSSLAPSKLRRHLETKHAAY 160
Cdd:smart00614   6 FTLILEKDNGKQRAKCKYCGKKLSrSSKGGTSNLRRHLRRKHPAR 50
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 117-160 5.44e-03

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 35.48  E-value: 5.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 219521826   117 FGFTYFGNRDAPHAQCVLCKKILS-NSSLAPSKLRRHLETKHAAY 160
Cdd:smart00614   6 FTLILEKDNGKQRAKCKYCGKKLSrSSKGGTSNLRRHLRRKHPAR 50
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 117-160 5.44e-03

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 35.48  E-value: 5.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 219521826   117 FGFTYFGNRDAPHAQCVLCKKILS-NSSLAPSKLRRHLETKHAAY 160
Cdd:smart00614   6 FTLILEKDNGKQRAKCKYCGKKLSrSSKGGTSNLRRHLRRKHPAR 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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