|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-464 |
2.55e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 2.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLrdqaveA 289
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 290 QACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTFAKKHLQISQEIGDrhgel 369
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 370 tARMNVAQLQLVLGRLTSPAAS-EKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLEREQNGDSHHSGDWRGPSRDSLPL 448
Cdd:COG0457 146 -ALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*.
gi 525313748 449 PVRSRKYQEGPDAERR 464
Cdd:COG0457 225 LALALLLALRLAALAL 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
69-325 |
1.21e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 69 YSQLGNAYFYLKEHGRALEYHKHDLLLARtigdrmGEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARA 148
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 149 LYNIGNVYHAKGKqlswnaanatqdpghlppdvretLCKASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEA 228
Cdd:COG0457 79 LNNLGLALQALGR-----------------------YEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 229 TTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERA 308
Cdd:COG0457 130 IEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
250
....*....|....*..
gi 525313748 309 AEYHLRHLLIAQELADR 325
Cdd:COG0457 204 EQALRKKLAILTLAALA 220
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
210-281 |
9.91e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.47 E-value: 9.91e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEF--GDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQ 281
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
496-517 |
4.13e-07 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 46.26 E-value: 4.13e-07
|
| GoLoco |
pfam02188 |
GoLoco motif; |
597-617 |
7.26e-06 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.79 E-value: 7.26e-06
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
596-618 |
1.14e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 42.10 E-value: 1.14e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
549-569 |
1.24e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.02 E-value: 1.24e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
631-652 |
1.28e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.02 E-value: 1.28e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
548-570 |
2.78e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.33 E-value: 2.78e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
495-517 |
3.55e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 40.95 E-value: 3.55e-05
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-385 |
4.10e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 46.84 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKE-FGDKAAE-RRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDqAV 287
Cdd:NF040586 479 MTAGGLGADLRALGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLG-PD 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 288 EAQACYSLGN---TYTLLQDYERAAEY---HLRHLLIAQELADRVGEGRACWSLGNAYVSMGRPAQALTFAKKHLQISQE 361
Cdd:NF040586 558 HPRTLLSANNlarDLRELGRYAEALDLleeALERYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRR 637
|
170 180
....*....|....*....|....*.
gi 525313748 362 I-GDRHGE-LTARMNVAQLQLVLGRL 385
Cdd:NF040586 638 RfGPDHPDtLAAALSLANDLRALGDA 663
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
106-162 |
8.52e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 8.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 525313748 106 AKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQ--GDKVGEARALYNIGNVYHAKGKQ 162
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRY 61
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
630-652 |
8.99e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 39.79 E-value: 8.99e-05
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
40-434 |
3.82e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 40 KAGDFKTGVAFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLKEHGRALEyhkhdllLARTIGDRMGEAK------- 107
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARE-------LDEDTLERQRRVLglgedhp 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 108 ----ASGNLGNTLKVLGRFDEAavccqrhLSIAQEqgdkvgearalynignvyhakgkqlSWNAANATqdpghLPPDVRE 183
Cdd:NF040586 476 htlmTAGGLGADLRALGRFREA-------LELDEE-------------------------TLERHRRV-----FGEDHPR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 184 TLckasefyernlslvkelgdraaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFG--DKAAERRAYSNLGNAHVF 261
Cdd:NF040586 519 TL------------------------RAANNLAVSLRLLGDYREALELDREVLRRRRRVLgpDHPRTLLSANNLARDLRE 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 262 LGRFDVAAEYYKKTLQLSRQLR---DQAVEAQACYSLGNTYTLLQDYERAAEyHLRHLLiaQELADRVGEG----RAC-W 333
Cdd:NF040586 575 LGRYAEALDLLEEALERYREVLggpDHPDTLRAAKSLAVALRRAGRLEEALE-LAEDTY--ERYRRRFGPDhpdtLAAaL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 334 SLGNAYVSMGRPAQALTFAKKHLQISQEI-GDRHG-ELTARMNVAQLQLVLGrltspaasekpdlagyEAQGARpkrtqR 411
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDRYRRVlGEDHPfTLACRNNLAVLLRALG----------------DPEEAR-----E 710
|
410 420
....*....|....*....|...
gi 525313748 412 LSAETWDLLrlpleREQNGDSHH 434
Cdd:NF040586 711 LAEAALEGL-----RERLGPDHP 728
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
289-321 |
4.98e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.98e-03
10 20 30
....*....|....*....|....*....|...
gi 525313748 289 AQACYSLGNTYTLLQDYERAAEYHLRHLLIAQE 321
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
106-138 |
5.13e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 5.13e-03
10 20 30
....*....|....*....|....*....|...
gi 525313748 106 AKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQE 138
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-464 |
2.55e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 2.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLrdqaveA 289
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 290 QACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTFAKKHLQISQEIGDrhgel 369
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 370 tARMNVAQLQLVLGRLTSPAAS-EKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLEREQNGDSHHSGDWRGPSRDSLPL 448
Cdd:COG0457 146 -ALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*.
gi 525313748 449 PVRSRKYQEGPDAERR 464
Cdd:COG0457 225 LALALLLALRLAALAL 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
105-372 |
2.75e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 2.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 105 EAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEqgdkvgEARALYNIGNVYHAKGKqlswnaanatqdpghlppdvret 184
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 185 LCKASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGR 264
Cdd:COG0457 58 YEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGR 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 265 FDVAAEYYKKTLQLSRQLrdqaveAQACYSLGNTYTLLQDYERAAEYHLRhlLIAQELADRVGEGRACWSLGNAYVSMGR 344
Cdd:COG0457 126 YDEAIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLL 197
|
250 260
....*....|....*....|....*...
gi 525313748 345 PAQALTFAKKHLQISQEIGDRHGELTAR 372
Cdd:COG0457 198 ALLLALEQALRKKLAILTLAALAELLLL 225
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
69-325 |
1.21e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 69 YSQLGNAYFYLKEHGRALEYHKHDLLLARtigdrmGEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARA 148
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 149 LYNIGNVYHAKGKqlswnaanatqdpghlppdvretLCKASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEA 228
Cdd:COG0457 79 LNNLGLALQALGR-----------------------YEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 229 TTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERA 308
Cdd:COG0457 130 IEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
250
....*....|....*..
gi 525313748 309 AEYHLRHLLIAQELADR 325
Cdd:COG0457 204 EQALRKKLAILTLAALA 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
145-427 |
4.12e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 145 EARALYNIGNVYHAKGKQLswnaanatqdpghlppdvretlcKASEFYERNLSLVKELGDraaqgrAYGNLGNTHYLLGN 224
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYE-----------------------EAIEDYEKALELDPDDAE------ALYNLGLAYLRLGR 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 225 FTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLrdqaveAQACYSLGNTYTLLQD 304
Cdd:COG0457 58 YEEALADYEQALELDPDDAE------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGR 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 305 YERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTFAKKHLQisQEIGDRHGELTARMNVAQLQLVLGR 384
Cdd:COG0457 126 YDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEA--AALAALLAAALGEAALALAAAEVLL 197
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 525313748 385 LTSPAASEKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLERE 427
Cdd:COG0457 198 ALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-316 |
4.19e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 4.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 33 LEGERLCKAGDFKTGVAFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLKEHGRALEYHKHdlLLARTiGDRmgeAKASGNL 112
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQK--LLERD-PDR---AEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 113 GNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARALYNIGNVYHAKGKqlsWNAANATQDP-GHLPPDVRETLCKASEF 191
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDD------AEALRLLAEIYEQEGD---WEKAIEVLERlLKLGPENAHAYCELAEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 192 YER--NLSLVKELGDRAAQ-----GRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGdkaaerRAYSNLGNAHVFLGR 264
Cdd:COG2956 154 YLEqgDYDEAIEALEKALKldpdcARALLLLAELYLEQGDYEEAIAALERALEQDPDYL------PALPRLAELYEKLGD 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 525313748 265 FDVAAEYYKKTLQLSRQLRDQaveaqacYSLGNTYTLLQDYERAAEYHLRHL 316
Cdd:COG2956 228 PEEALELLRKALELDPSDDLL-------LALADLLERKEGLEAALALLERQL 272
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
210-281 |
9.91e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.47 E-value: 9.91e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEF--GDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQ 281
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
201-358 |
3.13e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.01 E-value: 3.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 201 ELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSR 280
Cdd:COG3914 70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNP 143
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525313748 281 QLrdqaveAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTFAKKHLQI 358
Cdd:COG3914 144 DF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-361 |
8.32e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 8.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 206 AAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQlrdq 285
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 525313748 286 avEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTFAKKHLQISQE 361
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
192-385 |
1.15e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.08 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 192 YERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEY 271
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 272 YKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADrvgegrACWSLGNAYVSMGRPAQALTF 351
Cdd:COG3914 101 YRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAA 168
|
170 180 190
....*....|....*....|....*....|....
gi 525313748 352 AKKHLQIsqeigdRHGELTARMNVAQLQLVLGRL 385
Cdd:COG3914 169 LRRALEL------DPDNAEALNNLGNALQDLGRL 196
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
111-362 |
1.72e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 111 NLGNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARALYNIGNVYHAKGKqlswnaanatqdpghlpPDvretlcKASE 190
Cdd:COG2956 47 ALGNLYRRRGEYDRAIRIHQKLLERDPDR------AEALLELAQDYLKAGL-----------------LD------RAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 191 FYERnlsLVKELGDRAaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEfgdkaaERRAYSNLGNAHVFLGRFDVAAE 270
Cdd:COG2956 98 LLEK---LLELDPDDA---EALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 271 YYKKTLQLSRQlrdqAVEAQacYSLGNTYTLLQDYERAAEyHLRHLLIAQELADRVGEgracwSLGNAYVSMGRPAQALT 350
Cdd:COG2956 166 ALEKALKLDPD----CARAL--LLLAELYLEQGDYEEAIA-ALERALEQDPDYLPALP-----RLAELYEKLGDPEEALE 233
|
250
....*....|..
gi 525313748 351 FAKKHLQISQEI 362
Cdd:COG2956 234 LLRKALELDPSD 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
211-324 |
3.80e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 211 AYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLrdqaveAQ 290
Cdd:COG3914 114 ALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALELDPDN------AE 181
|
90 100 110
....*....|....*....|....*....|....
gi 525313748 291 ACYSLGNTYTLLQDYERAAEYHLRHLLIAQELAD 324
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
201-427 |
1.28e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 55.25 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 201 ELGDRAAQGRAYGNLGntHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSR 280
Cdd:COG3899 784 RHGNPPASARAYANLG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGL 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 281 QLRDQAVEAQACYSLGNTyTLLQDYERAAEYHLRHLLIAQELADRVGEGRACWSLGNAYVSMGRPAQALTFAKKHLQISQ 360
Cdd:COG3899 862 ETGDAALALLALAAAAAA-AAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA 940
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 525313748 361 EIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLERE 427
Cdd:COG3899 941 AAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAA 1007
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1-281 |
1.93e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 1 MAGPAPPAADELPGPAARRLYSRMEASCLELALEGERLCKAGDFKTGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLK 80
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 81 EHGRALEYHKHDLLLARTigdrmgEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARALYNIGNVYHAKG 160
Cdd:COG3914 93 RYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 161 KQLswnaanatqdpghlppdvretlcKASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAK 240
Cdd:COG3914 161 RLE-----------------------EAIAALRRALEL------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 525313748 241 EFgdkaaeRRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQ 281
Cdd:COG3914 212 DN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
496-517 |
4.13e-07 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 46.26 E-value: 4.13e-07
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
250-321 |
3.93e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 3.93e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 525313748 250 RAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLR--DQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQE 321
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
597-617 |
7.26e-06 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.79 E-value: 7.26e-06
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
35-161 |
1.09e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.31 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 35 GERLCKAGDFKTGVAFFEAAVQVGTEDlktlSAIYSQLGNAYFYLKEHGRALEYHKHDLLLartigdRMGEAKASGNLGN 114
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGL 118
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 525313748 115 TLKVLGRFDEAAVCCQRHLSIaqeqgdKVGEARALYNIGNVYHAKGK 161
Cdd:COG0457 119 ALLELGRYDEAIEAYERALEL------DPDDADALYNLGIALEKLGR 159
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
596-618 |
1.14e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 42.10 E-value: 1.14e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
549-569 |
1.24e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.02 E-value: 1.24e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
631-652 |
1.28e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 42.02 E-value: 1.28e-05
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
293-361 |
2.04e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 2.04e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 525313748 293 YSLGNTYTLLQDYERAAEYHLRHLLIAQEL--ADRVGEGRACWSLGNAYVSMGRPAQALTFAKKHLQISQE 361
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
548-570 |
2.78e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.33 E-value: 2.78e-05
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
250-359 |
3.33e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 250 RAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEyhlrhlLIAQELADRVGEG 329
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEE------LLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|
gi 525313748 330 RACWSLGNAYVSMGRPAQALTFAKKHLQIS 359
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
495-517 |
3.55e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 40.95 E-value: 3.55e-05
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-385 |
4.10e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 46.84 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKE-FGDKAAE-RRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDqAV 287
Cdd:NF040586 479 MTAGGLGADLRALGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLG-PD 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 288 EAQACYSLGN---TYTLLQDYERAAEY---HLRHLLIAQELADRVGEGRACWSLGNAYVSMGRPAQALTFAKKHLQISQE 361
Cdd:NF040586 558 HPRTLLSANNlarDLRELGRYAEALDLleeALERYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRR 637
|
170 180
....*....|....*....|....*.
gi 525313748 362 I-GDRHGE-LTARMNVAQLQLVLGRL 385
Cdd:NF040586 638 RfGPDHPDtLAAALSLANDLRALGDA 663
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
246-385 |
4.46e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 246 AAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYhlrhllIAQELADR 325
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVL------LHEALELD 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 326 VGEGRACWSLGNAYVSMGRPAQALTFAKKHLQISQEigdrHGEltARMNVAQLQLVLGRL 385
Cdd:COG4783 69 PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE----HPE--AYLRLARAYRALGRP 122
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
202-323 |
6.96e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 6.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 202 LGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQ 281
Cdd:COG5010 47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------LYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 525313748 282 lrdqavEAQACYSLGNTYTLLQDYERAAEyHLRHLLIAQELA 323
Cdd:COG5010 121 ------NPNAYSNLAALLLSLGQDDEAKA-ALQRALGTSPLK 155
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
106-162 |
8.52e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 8.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 525313748 106 AKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQ--GDKVGEARALYNIGNVYHAKGKQ 162
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRY 61
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
630-652 |
8.99e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 39.79 E-value: 8.99e-05
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
187-284 |
1.76e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 187 KASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKerlAIAKEFGDKaaerRAYSNLGNAHVFLGRFD 266
Cdd:COG3063 10 EAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNA----EALLNLAELLLELGDYD 76
|
90
....*....|....*...
gi 525313748 267 VAAEYYKKTLQLSRQLRD 284
Cdd:COG3063 77 EALAYLERALELDPSALR 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
210-357 |
1.99e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 210 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQlRDQAV-- 287
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD-YAYAYln 146
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 525313748 288 EAQACYSLGNTYTLLQDYERAAEY-------HLRHLLIAQELADRVGEGRACWSLGNAYVSMGRPAQALTFAKKHLQ 357
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELdpndperALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
187-241 |
2.04e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 2.04e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 525313748 187 KASEFYERNLSLVKEL--GDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKE 241
Cdd:pfam13424 21 EALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
258-361 |
2.30e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 258 AHVFLGRFDVAAEYYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHlRHLLIAQELADrvgegrACWSLGN 337
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAE------ALLNLAE 67
|
90 100
....*....|....*....|....
gi 525313748 338 AYVSMGRPAQALTFAKKHLQISQE 361
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
65-138 |
2.82e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 2.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 525313748 65 LSAIYSQLGNAYFYLKEHGRALEYHKHDLLLARTI--GDRMGEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQE 138
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
291-325 |
2.91e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 38.68 E-value: 2.91e-04
10 20 30
....*....|....*....|....*....|....*
gi 525313748 291 ACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADR 325
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
223-385 |
3.09e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 43.45 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 223 GNFTEATTFHKERLAIAKEfgDKAAER-RAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDQAVEAQACYSLGNTYTL 301
Cdd:pfam17874 15 GDAERALELAEQALALLPE--DDLLARgLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 302 -------LQDYERAAEYHLRHLLIAQELAdrvgeGRACWSLGNAYVSMGRPAQALTFAKKHLQISQEiGDRHGELTARMN 374
Cdd:pfam17874 93 qgrlhqaLETYQQALQLARDHGLQHLPLH-----GFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVL 166
|
170
....*....|.
gi 525313748 375 VAQLQLVLGRL 385
Cdd:pfam17874 167 LARIALAQGEL 177
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
40-434 |
3.82e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 40 KAGDFKTGVAFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLKEHGRALEyhkhdllLARTIGDRMGEAK------- 107
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARE-------LDEDTLERQRRVLglgedhp 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 108 ----ASGNLGNTLKVLGRFDEAavccqrhLSIAQEqgdkvgearalynignvyhakgkqlSWNAANATqdpghLPPDVRE 183
Cdd:NF040586 476 htlmTAGGLGADLRALGRFREA-------LELDEE-------------------------TLERHRRV-----FGEDHPR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 184 TLckasefyernlslvkelgdraaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFG--DKAAERRAYSNLGNAHVF 261
Cdd:NF040586 519 TL------------------------RAANNLAVSLRLLGDYREALELDREVLRRRRRVLgpDHPRTLLSANNLARDLRE 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 262 LGRFDVAAEYYKKTLQLSRQLR---DQAVEAQACYSLGNTYTLLQDYERAAEyHLRHLLiaQELADRVGEG----RAC-W 333
Cdd:NF040586 575 LGRYAEALDLLEEALERYREVLggpDHPDTLRAAKSLAVALRRAGRLEEALE-LAEDTY--ERYRRRFGPDhpdtLAAaL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 334 SLGNAYVSMGRPAQALTFAKKHLQISQEI-GDRHG-ELTARMNVAQLQLVLGrltspaasekpdlagyEAQGARpkrtqR 411
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDRYRRVlGEDHPfTLACRNNLAVLLRALG----------------DPEEAR-----E 710
|
410 420
....*....|....*....|...
gi 525313748 412 LSAETWDLLrlpleREQNGDSHH 434
Cdd:NF040586 711 LAEAALEGL-----RERLGPDHP 728
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
258-354 |
4.51e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 258 AHVFLGRFDVAAEYYKktlQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRhllIAQELADRVGEGRACWSLGN 337
Cdd:COG1729 2 ALLKAGDYDEAIAAFK---AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75
|
90
....*....|....*..
gi 525313748 338 AYVSMGRPAQALTFAKK 354
Cdd:COG1729 76 SYLELGDYDKARATLEE 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
198-317 |
7.23e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 198 LVKELGDRAAQ----GRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDVAAEYYK 273
Cdd:COG4235 2 AIARLRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 525313748 274 KTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYhLRHLL 317
Cdd:COG4235 76 RALALDPD------NPEALYLLGLAAFQQGDYAEAIAA-WQKLL 112
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
250-278 |
1.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 1.04e-03
10 20
....*....|....*....|....*....
gi 525313748 250 RAYSNLGNAHVFLGRFDVAAEYYKKTLQL 278
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-361 |
1.23e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 255 LGNAHVFLGRFDVAAEYYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELAdrvgegRACWS 334
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81
|
90 100
....*....|....*....|....*..
gi 525313748 335 LGNAYVSMGRPAQALTFAKKHLQISQE 361
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
30-161 |
1.77e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 30 ELALEGERLCKAGDFKTGVAFFEAAVQVGTEDLktlsAIYSQLGNAYFYLKEHGRALEYHKHDLLLARtigdrmGEAKAS 109
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 525313748 110 GNLGNTLKVLGRFDEAAVCCQRHLSIAQEQgdkvgeARALYNIGNVYHAKGK 161
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGR 121
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
197-277 |
1.93e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.43 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 197 SLVKELGDRAAQGRAYGNLGNTHYLLGNFTEA-TTFhkerLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKT 275
Cdd:COG1729 18 AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAaEAF----EKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEEL 93
|
..
gi 525313748 276 LQ 277
Cdd:COG1729 94 IK 95
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
29-428 |
2.01e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.38 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 29 LELALE-GERLCKAGDFKTGVAFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLKEHGRALEYHKHDLLLARTIG 100
Cdd:COG3899 745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 101 DRMGEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQGDKVGEARALYNIGNVYHAKGKQLSWNAANATQDPGHLPPD 180
Cdd:COG3899 825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAAL 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 181 VRETLCKASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHV 260
Cdd:COG3899 905 AAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAA 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 261 FLGRFDVAAEYYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADRVGEGRACWSLGNAYV 340
Cdd:COG3899 985 AAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAA 1064
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 341 SMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQGARPKRTQRLSAETWDLL 420
Cdd:COG3899 1065 AAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALAL 1144
|
....*...
gi 525313748 421 RLPLEREQ 428
Cdd:COG3899 1145 ALAALLLL 1152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
198-359 |
2.19e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 198 LVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQ 277
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 278 LSRQlrdqavEAQACYSLGNTYTLLQDYERAaeyhLRHLLIAQELADrvGEGRACWSLGNAYVSMGRPAQALTFAKKHLQ 357
Cdd:COG5010 83 LDPN------NPELYYNLALLYSRSGDKDEA----KEYYEKALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
..
gi 525313748 358 IS 359
Cdd:COG5010 151 TS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
219-311 |
3.05e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 219 HYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHVFLGRFDvAAEYYKKTLQLSRQlrdqavEAQACYSLGNT 298
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYD-EAIALEKALKLDPN------NAEALLNLAEL 68
|
90
....*....|...
gi 525313748 299 YTLLQDYERAAEY 311
Cdd:COG3063 69 LLELGDYDEALAY 81
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
106-138 |
3.70e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 3.70e-03
10 20 30
....*....|....*....|....*....|...
gi 525313748 106 AKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQE 138
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
35-207 |
4.65e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.22 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 35 GERLCKAGDFKTGVAFFEAAVQVGTEDlktlSAIYSQLGNAYFYLKEHGRALEYHKHDLLLARtigdrmGEAKASGNLGN 114
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDP------DDADALYNLGI 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 115 TLKVLGRFDEAAVCCQRHLSIAQEQGDKVGEARALYNIGNVYHAKGKQLSWNAANATQDPGHLPPDVRETLCKASEFYER 194
Cdd:COG0457 153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
170
....*....|...
gi 525313748 195 NLSLVKELGDRAA 207
Cdd:COG0457 233 LRLAALALYQYRA 245
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
289-321 |
4.98e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.98e-03
10 20 30
....*....|....*....|....*....|...
gi 525313748 289 AQACYSLGNTYTLLQDYERAAEYHLRHLLIAQE 321
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
106-138 |
5.13e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 5.13e-03
10 20 30
....*....|....*....|....*....|...
gi 525313748 106 AKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQE 138
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
219-311 |
6.27e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525313748 219 HYLLGNFTEA-TTFHKerlaIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSrqlRDQAVEAQACYSLGN 297
Cdd:COG1729 3 LLKAGDYDEAiAAFKA----FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY---PDSPKAPDALLKLGL 75
|
90
....*....|....
gi 525313748 298 TYTLLQDYERAAEY 311
Cdd:COG1729 76 SYLELGDYDKARAT 89
|
|
| |
