NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|254587912|ref|NP_001156999|]
View 

inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 isoform a precursor [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mab-21_C super family cl48430
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 413-514 5.11e-04

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


The actual alignment was detected with superfamily member pfam20266:

Pssm-ID: 466416  Cd Length: 102  Bit Score: 39.53  E-value: 5.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587912  413 KCLQIVLSLQDHQILPPGASRPILTSYHFKTALM-HLLLRLPLTDWQHSMLSLRLQDLLWFLGRGLQQRSLHHFLignty 491
Cdd:pfam20266   4 KCLRILKKLKEPGKRDVKTELSKICSYHLKTLFLwECEKHPDDSDWDKENLSDRFLGLLEELHKCLRNGKLPHFF----- 78

                          90       100
                  ....*....|....*....|...
gi 254587912  492 lpltipIPKafrnaepVNLFQHL 514
Cdd:pfam20266  79 ------IPK-------LNLFQSL 88
 
Name Accession Description Interval E-value
Mab-21_C pfam20266
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 413-514 5.11e-04

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 466416  Cd Length: 102  Bit Score: 39.53  E-value: 5.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587912  413 KCLQIVLSLQDHQILPPGASRPILTSYHFKTALM-HLLLRLPLTDWQHSMLSLRLQDLLWFLGRGLQQRSLHHFLignty 491
Cdd:pfam20266   4 KCLRILKKLKEPGKRDVKTELSKICSYHLKTLFLwECEKHPDDSDWDKENLSDRFLGLLEELHKCLRNGKLPHFF----- 78

                          90       100
                  ....*....|....*....|...
gi 254587912  492 lpltipIPKafrnaepVNLFQHL 514
Cdd:pfam20266  79 ------IPK-------LNLFQSL 88
 
Name Accession Description Interval E-value
Mab-21_C pfam20266
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 413-514 5.11e-04

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 466416  Cd Length: 102  Bit Score: 39.53  E-value: 5.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587912  413 KCLQIVLSLQDHQILPPGASRPILTSYHFKTALM-HLLLRLPLTDWQHSMLSLRLQDLLWFLGRGLQQRSLHHFLignty 491
Cdd:pfam20266   4 KCLRILKKLKEPGKRDVKTELSKICSYHLKTLFLwECEKHPDDSDWDKENLSDRFLGLLEELHKCLRNGKLPHFF----- 78

                          90       100
                  ....*....|....*....|...
gi 254587912  492 lpltipIPKafrnaepVNLFQHL 514
Cdd:pfam20266  79 ------IPK-------LNLFQSL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH