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Conserved domains on  [gi|270265853|ref|NP_001161846|]
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dyslexia-associated protein KIAA0319 isoform b [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
myxo_dep_M36 super family cl45606
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 422-804 4.02e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


The actual alignment was detected with superfamily member NF038112:

Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.02e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  422 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 492
Cdd:NF038112 1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  493 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 572
Cdd:NF038112 1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  573 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 649
Cdd:NF038112 1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  650 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 726
Cdd:NF038112 1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  727 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 804
Cdd:NF038112 1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 11-93 1.52e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


:

Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.52e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853     11 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 77
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 270265853     78 NCepkKMGPIRSYLTF 93
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
PARM super family cl37917
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 193-328 9.16e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


The actual alignment was detected with superfamily member pfam17061:

Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 9.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   193 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 262
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270265853   263 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTVKELTV 328
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVTCELI 220
 
Name Accession Description Interval E-value
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 422-804 4.02e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.02e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  422 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 492
Cdd:NF038112 1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  493 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 572
Cdd:NF038112 1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  573 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 649
Cdd:NF038112 1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  650 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 726
Cdd:NF038112 1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  727 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 804
Cdd:NF038112 1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 395-711 6.70e-31

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 132.09  E-value: 6.70e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  395 VFKVTVSSE-NAFGEGFVNVTVkpaRRVNLPPVAVVS-PQLQELTLPLTsalIDGSQSTDDTEIVSYHWEEINGPFIeek 472
Cdd:NF038112 1255 TFQLVVSDGtKTSAPDTVTVLV---RNVNRAPVAVAGaPATVDERSTVT---LDGSGTDADGDALTYAWTQTSGPAV--- 1325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  473 TSVDSPVLRLSNLDP-----GNYSFRLTVTDSdGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDD 547
Cdd:NF038112 1326 TLTGATTATATFTAPevtadTQLTFTLTVSDG-TASATDTVTVTVRN-VNRAPVANAGADQTVD-ERSTVTLSGSATDPD 1402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  548 HQIVLYEWSlgpGSEGKHVVMQGVQTPYLHLSA---MQEGDYTFQLKVTDSSrqQSTAVVTVIVQPEN-NRPPVAVAGPD 623
Cdd:NF038112 1403 GDALTYAWT---QTAGPTVTLTGADTATASFTApevAADTELTFQLTVSADG--QASADVTVTVTVRNvNRAPVAHAGES 1477

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  624 KELIfPVESATLDGSSSSDDHGIVFYHWEHVRGPSaVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTV 700
Cdd:NF038112 1478 ITVD-EGSTVTLDASATDPDGDTLTYAWTQVAGPS-VTLTGADSAKLTFTAPEVSadtTLTFSLTVTDGSGSSGPVVVTV 1555

                         330
                  ....*....|.
gi 270265853  701 AVKKENNSPPR 711
Cdd:NF038112 1556 TVKNVNRAPDG 1566
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 11-93 1.52e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.52e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853     11 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 77
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 270265853     78 NCepkKMGPIRSYLTF 93
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 537-817 3.57e-10

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 63.67  E-value: 3.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   537 ITLNGNQSSDDHQIvLYEWSLGPGSEGKHVVMQG----VQTPYLHLS--AMQEGDYTFQLKVTDSSRQ--QSTAVVTVIV 608
Cdd:pfam02010    1 ASVELNGCFSAYTI-DYLWSVFTVSSNLNLQTISspkdLVLPQLTIPsgTLPYGTYVFTLTVSLSSTPslAGTDIITVTV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   609 QPennRPPVAVAGPDKELIFPV-ESATLDGSSSSD------DHGIVFYHWEHVRGPSAVE-MENID-------------- 666
Cdd:pfam02010   80 QP---SPLVAVIDGGSSRVVGYnQDLTLDGSESYDpdvdpgSSSGLTYLWSCRRSSSGDNpLLNNDpvcfsdqnegtllq 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   667 --KAIATVTG--LQVG-TYHFRLTVKDQQGLSSTSTLTVAVKKENnsPPRARAGGRH---VLVLPNNSITLDGSRSTDDQ 738
Cdd:pfam02010  157 stSSSLTIPAstLQANvTYTFKLTVSKGSRNSASTTQTILVVDGN--PPIIILSCISncnRKNNPVDRLVLLASTCLNCS 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   739 R---IVSYLWIRDGQS-------PAAGDVIDGSDHS-VALQLTNLVEGV-YTFHLRVTDSQGASDTDT-ATVEVQPDPRk 805
Cdd:pfam02010  235 SdlsDVTYRWLSLGSEntslvldQLNSQTSTGRSGPyLVIKAGVLQSGVsYRFTLIVTVYPGLVSGLAsISFITNAPPT- 313

                          330
                   ....*....|..
gi 270265853   806 SGLVELTLQVGV 817
Cdd:pfam02010  314 GGTCSVTPTEGT 325
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 426-512 5.85e-10

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 56.69  E-value: 5.85e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853    426 VAVVSPQLQELTLPLTSALIDgsQSTDDTEIVSYHWEEINGPFIEEKTSVdspvlrLSNLDPGNYSFRLTVTDSDGaTNS 505
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA--TSSDDGSIVSYTWDFGDGTSSTGPTVT------HTYTKPGTYTVTLTVTNAVG-SAS 71


                    ....*..
gi 270265853    506 TTAALIV 512
Cdd:smart00089   72 ATVTVVV 78
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 617-702 1.90e-08

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 52.50  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  617 VAVAGPDKELIFPVESATLDGSSSSDDhGIVFYHWEhvRGPSAVEMENIdkAIATVTGLQVGTYHFRLTVKDQQGLSSTS 696
Cdd:cd00146     1 PTASVSAPPVAELGASVTFSASDSSGG-SIVSYKWD--FGDGEVSSSGE--PTVTHTYTKPGTYTVTLTVTNAVGSSSTK 75


                  ....*.
gi 270265853  697 TLTVAV 702
Cdd:cd00146    76 TTTVVV 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
472-809 5.31e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 47.30  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  472 KTSVDSPVLRLSNLDPGN-YSFRLTVTDSDGATNSTTAALIVNNAVdyPPVANAGPNHTITLPqNSITLNGnQSSDDHQI 550
Cdd:COG3401   186 TVTSTTLVDGGGDIEPGTtYYYRVAATDTGGESAPSNEVSVTTPTT--PPSAPTGLTATADTP-GSVTLSW-DPVTESDA 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  551 VLYEWSLGPGSEGKHVVMQGVQ-TPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNrPPVAVAGPdkelifp 629
Cdd:COG3401   262 TGYRVYRSNSGDGPFTKVATVTtTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLT-PPAAPSGL------- 333

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  630 veSATLDGSSS-------SDDHGIVFYH---WEHVRGPSAVEMENIDKAIATVTGLQVG-TYHFRLTVKDQQGLSSTSTL 698
Cdd:COG3401   334 --TATAVGSSSitlswtaSSDADVTGYNvyrSTSGGGTYTKIAETVTTTSYTDTGLTPGtTYYYKVTAVDAAGNESAPSE 411

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  699 TVAVKKENNsPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGSDHSVALQLTNLVEGVYT 778
Cdd:COG3401   412 EVSATTASA-ASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490

                         330       340       350
                  ....*....|....*....|....*....|.
gi 270265853  779 FHLRVTDSQGASDTDTATVEVQPDPRKSGLV 809
Cdd:COG3401   491 VTTGSLVGGSGASSVTNSVSVIGASAAAAVG 521
MANEC pfam07502
MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the ...
 47-78 6.60e-04

MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the N-terminal region of several membrane-associated and extracellular proteins. Although formerly called MANSC (for motif at N terminus with seven cysteines) it has now been renamed by MANEC (motif at N terminus with eight cysteines) by Richard Mitter and Stephen Fitzgerald after the discovery of an eighth conserved cysteine. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors.


Pssm-ID: 462186  Cd Length: 90  Bit Score: 39.60  E-value: 6.60e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 270265853    47 DCTAACCDLSSCDLAwWFE---------GRCYLVSCPHKEN 78
Cdd:pfam07502   38 DCVRACCSTPRCNLA-VFEerpggedaiPSCYLFNCLYPSR 77
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 389-616 7.19e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.92  E-value: 7.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   389 LSVGLYVFKVTVSSENA--FGEGFVNVTVKPARRVnlPPVAVVSPQLQELTLPLtsaLIDGSQSTD------DTEIVSYH 460
Cdd:TIGR00864 2219 LAAGHYCFVFSLSFEDTplKKAACANLGVAAARLM--PIIEGGSYRVWSDTQDL---QLDAEESYDpnldddDQSLLHFH 2293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   461 WEEINGPFIEEKTSV-------DSPVLRL--SNLDPG-NYSFRLTVTDSDGATNSTTAALIVNNA---VDYPPVANAGPN 527
Cdd:TIGR00864 2294 WACQASSKGEAGCCAlnfglggKGPTLGIpgEELAAGiEYTFKLSIGKAGMKEEATNQTVLIQSGhipIVSLECVSCKAQ 2373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   528 HTITLPQNS-ITLNG---NQSSDDHQ------------IVLYEWSLGPGSEGKHVVM-QGVqtpyLHLSamqEGdYTFQL 590
Cdd:TIGR00864 2374 ALYEVSQNSyVYLEGrclNCQSGFHRgrwaartfqndtLVLDESSTSTGSAGMNLVLrQGV----LHDG---EG-YNFTL 2445

                          250       260
                   ....*....|....*....|....*.
gi 270265853   591 KVTDSSRQQSTAvVTVIVQPenNRPP 616
Cdd:TIGR00864 2446 HVLDDSGDEEGA-ASIRLHH--NMPP 2468
PARM pfam17061
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 193-328 9.16e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 9.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   193 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 262
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270265853   263 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTVKELTV 328
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVTCELI 220
 
Name Accession Description Interval E-value
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 422-804 4.02e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.02e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  422 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 492
Cdd:NF038112 1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  493 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 572
Cdd:NF038112 1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  573 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 649
Cdd:NF038112 1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  650 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 726
Cdd:NF038112 1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  727 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 804
Cdd:NF038112 1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 395-711 6.70e-31

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 132.09  E-value: 6.70e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  395 VFKVTVSSE-NAFGEGFVNVTVkpaRRVNLPPVAVVS-PQLQELTLPLTsalIDGSQSTDDTEIVSYHWEEINGPFIeek 472
Cdd:NF038112 1255 TFQLVVSDGtKTSAPDTVTVLV---RNVNRAPVAVAGaPATVDERSTVT---LDGSGTDADGDALTYAWTQTSGPAV--- 1325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  473 TSVDSPVLRLSNLDP-----GNYSFRLTVTDSdGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDD 547
Cdd:NF038112 1326 TLTGATTATATFTAPevtadTQLTFTLTVSDG-TASATDTVTVTVRN-VNRAPVANAGADQTVD-ERSTVTLSGSATDPD 1402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  548 HQIVLYEWSlgpGSEGKHVVMQGVQTPYLHLSA---MQEGDYTFQLKVTDSSrqQSTAVVTVIVQPEN-NRPPVAVAGPD 623
Cdd:NF038112 1403 GDALTYAWT---QTAGPTVTLTGADTATASFTApevAADTELTFQLTVSADG--QASADVTVTVTVRNvNRAPVAHAGES 1477

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  624 KELIfPVESATLDGSSSSDDHGIVFYHWEHVRGPSaVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTV 700
Cdd:NF038112 1478 ITVD-EGSTVTLDASATDPDGDTLTYAWTQVAGPS-VTLTGADSAKLTFTAPEVSadtTLTFSLTVTDGSGSSGPVVVTV 1555

                         330
                  ....*....|.
gi 270265853  701 AVKKENNSPPR 711
Cdd:NF038112 1556 TVKNVNRAPDG 1566
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 11-93 1.52e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.52e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853     11 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 77
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 270265853     78 NCepkKMGPIRSYLTF 93
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 537-817 3.57e-10

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 63.67  E-value: 3.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   537 ITLNGNQSSDDHQIvLYEWSLGPGSEGKHVVMQG----VQTPYLHLS--AMQEGDYTFQLKVTDSSRQ--QSTAVVTVIV 608
Cdd:pfam02010    1 ASVELNGCFSAYTI-DYLWSVFTVSSNLNLQTISspkdLVLPQLTIPsgTLPYGTYVFTLTVSLSSTPslAGTDIITVTV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   609 QPennRPPVAVAGPDKELIFPV-ESATLDGSSSSD------DHGIVFYHWEHVRGPSAVE-MENID-------------- 666
Cdd:pfam02010   80 QP---SPLVAVIDGGSSRVVGYnQDLTLDGSESYDpdvdpgSSSGLTYLWSCRRSSSGDNpLLNNDpvcfsdqnegtllq 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   667 --KAIATVTG--LQVG-TYHFRLTVKDQQGLSSTSTLTVAVKKENnsPPRARAGGRH---VLVLPNNSITLDGSRSTDDQ 738
Cdd:pfam02010  157 stSSSLTIPAstLQANvTYTFKLTVSKGSRNSASTTQTILVVDGN--PPIIILSCISncnRKNNPVDRLVLLASTCLNCS 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   739 R---IVSYLWIRDGQS-------PAAGDVIDGSDHS-VALQLTNLVEGV-YTFHLRVTDSQGASDTDT-ATVEVQPDPRk 805
Cdd:pfam02010  235 SdlsDVTYRWLSLGSEntslvldQLNSQTSTGRSGPyLVIKAGVLQSGVsYRFTLIVTVYPGLVSGLAsISFITNAPPT- 313

                          330
                   ....*....|..
gi 270265853   806 SGLVELTLQVGV 817
Cdd:pfam02010  314 GGTCSVTPTEGT 325
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 426-512 5.85e-10

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 56.69  E-value: 5.85e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853    426 VAVVSPQLQELTLPLTSALIDgsQSTDDTEIVSYHWEEINGPFIEEKTSVdspvlrLSNLDPGNYSFRLTVTDSDGaTNS 505
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA--TSSDDGSIVSYTWDFGDGTSSTGPTVT------HTYTKPGTYTVTLTVTNAVG-SAS 71


                    ....*..
gi 270265853    506 TTAALIV 512
Cdd:smart00089   72 ATVTVVV 78
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 383-708 2.99e-09

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 60.59  E-value: 2.99e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   383 TLNLSQLSVGLYVFKVTVSSE---NAFGEGFVNVTVKPArrvnlPPVAV-------VSPQLQELTLpltsaliDGSQSTD 452
Cdd:pfam02010   44 TIPSGTLPYGTYVFTLTVSLSstpSLAGTDIITVTVQPS-----PLVAVidggssrVVGYNQDLTL-------DGSESYD 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   453 ------DTEIVSYHWEEINGPFIEEKTSVDSPV-----LRLSNLDPGN---------------YSFRLTVTDSDGATNST 506
Cdd:pfam02010  112 pdvdpgSSSGLTYLWSCRRSSSGDNPLLNNDPVcfsdqNEGTLLQSTSssltipastlqanvtYTFKLTVSKGSRNSAST 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   507 TAALIVNNavDYPP------VANAGpnhTITLPQNS---ITLNGNQSSDDHQIVLYEWsLGPGSEGKHVV--------MQ 569
Cdd:pfam02010  192 TQTILVVD--GNPPiiilscISNCN---RKNNPVDRlvlLASTCLNCSSDLSDVTYRW-LSLGSENTSLVldqlnsqtST 265

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   570 GVQTPYLHLSA--MQEG-DYTFQLKVTDSSRQQS-TAVVTVIvqpeNNRPPVAVA-------GPDKELIFPVESatldgS 638
Cdd:pfam02010  266 GRSGPYLVIKAgvLQSGvSYRFTLIVTVYPGLVSgLASISFI----TNAPPTGGTcsvtpteGTALETKFTVTC-----Q 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   639 SSSDDHGIVFYHWEHVRGPSAVEMENI------DKAIATVTGLQVGTYHFRLT----VKDQQGLSSTSTLTVAVKKENNS 708
Cdd:pfam02010  337 GWTDDDLPLTYQFGDISFREASEEWFLlyegssQISISTFLPPGLPANDYQVTvvvvVYDSLGAATSVSLTITVTPPSSS 416
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 521-609 6.41e-09

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 53.61  E-value: 6.41e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853    521 VANAGPNHTITLPQNSITLNGnQSSDDHQIVLYEWSLGPG--SEGKHVVMQgvqtpYLHlsamqEGDYTFQLKVTDSSRq 598
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA-TSSDDGSIVSYTWDFGDGtsSTGPTVTHT-----YTK-----PGTYTVTLTVTNAVG- 68

                            90
                    ....*....|.
gi 270265853    599 QSTAVVTVIVQ 609
Cdd:smart00089   69 SASATVTVVVQ 79
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 617-703 7.57e-09

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 53.61  E-value: 7.57e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853    617 VAVAGPDKELIFPVESATLDGSSSsDDHGIVFYHWEHVRGPSAVEmenidkAIATVTGLQVGTYHFRLTVKDQQGlSSTS 696
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTATSS-DDGSIVSYTWDFGDGTSSTG------PTVTHTYTKPGTYTVTLTVTNAVG-SASA 72


                    ....*..
gi 270265853    697 TLTVAVK 703
Cdd:smart00089   73 TVTVVVQ 79
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 480-801 1.05e-08

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 58.67  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   480 LRLSNLDPGNYSFRLTVTDSDgaTNSTTAALIVNNAVDYPP-VANAGPNHTITLPQNS-ITLNGNQSSD------DHQIV 551
Cdd:pfam02010   45 IPSGTLPYGTYVFTLTVSLSS--TPSLAGTDIITVTVQPSPlVAVIDGGSSRVVGYNQdLTLDGSESYDpdvdpgSSSGL 122

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   552 LYEWSLGPGSEGKHVVM--QGVQTPYLH-LSAMQEGD---------------YTFQLKVTDSSRQQSTAVVTVIVQPENn 613
Cdd:pfam02010  123 TYLWSCRRSSSGDNPLLnnDPVCFSDQNeGTLLQSTSssltipastlqanvtYTFKLTVSKGSRNSASTTQTILVVDGN- 201

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   614 rPP---VAVAGPDKELIFPVES---ATLDGSSSSDDHGIVFYHWEHVRGPSAVEMENI--DKAIATVTG---------LQ 676
Cdd:pfam02010  202 -PPiiiLSCISNCNRKNNPVDRlvlLASTCLNCSSDLSDVTYRWLSLGSENTSLVLDQlnSQTSTGRSGpylvikagvLQ 280

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   677 VGT-YHFRLTVKDQQGLSSTSTlTVAVKkeNNSPPRaraGGRhVLVLPNN------SITLDGSRSTDD------------ 737
Cdd:pfam02010  281 SGVsYRFTLIVTVYPGLVSGLA-SISFI--TNAPPT---GGT-CSVTPTEgtaletKFTVTCQGWTDDdlpltyqfgdis 353

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 270265853   738 --QRIVSYLWIRDGQSPaagdvidgSDHSVALQLTNLVEG-VYTFHLRVTDSQGASDTDTATVEVQP 801
Cdd:pfam02010  354 frEASEEWFLLYEGSSQ--------ISISTFLPPGLPANDyQVTVVVVVYDSLGAATSVSLTITVTP 412
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 617-702 1.90e-08

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 52.50  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  617 VAVAGPDKELIFPVESATLDGSSSSDDhGIVFYHWEhvRGPSAVEMENIdkAIATVTGLQVGTYHFRLTVKDQQGLSSTS 696
Cdd:cd00146     1 PTASVSAPPVAELGASVTFSASDSSGG-SIVSYKWD--FGDGEVSSSGE--PTVTHTYTKPGTYTVTLTVTNAVGSSSTK 75


                  ....*.
gi 270265853  697 TLTVAV 702
Cdd:cd00146    76 TTTVVV 81
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 711-800 7.68e-08

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 50.53  E-value: 7.68e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853    711 RARAGGRHVLVLPNNSITLDGSrSTDDQRIVSYLWirdgqspaagDVIDGSD-HSVALQLTNLVEGVYTFHLRVTDSQGa 789
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTAT-SSDDGSIVSYTW----------DFGDGTSsTGPTVTHTYTKPGTYTVTLTVTNAVG- 68

                            90
                    ....*....|.
gi 270265853    790 SDTDTATVEVQ 800
Cdd:smart00089   69 SASATVTVVVQ 79
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 613-702 1.89e-07

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 49.58  E-value: 1.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   613 NRPPVAVAGPDKElIFPVESATLDGSSSSD-DHGIVFYHWEHVRGpSAVEMENIDKAIATvtglqVGTYHFRLTVKDQQG 691
Cdd:pfam18911    1 NAAPVADAGGDRI-VAEGETVTFDASASDDpDGDILSYRWDFGDG-TTATGANVSHTYAA-----PGTYTVTLTVTDDSG 73

                           90
                   ....*....|..
gi 270265853   692 LS-STSTLTVAV 702
Cdd:pfam18911   74 ASnSTATDTVTV 85
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 710-799 2.74e-07

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 49.03  E-value: 2.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  710 PRARAGGRHVlVLPNNSITLDGSrSTDDQRIVSYLWIRDGqspaaGDVIDGSDHSValQLTNLVEGVYTFHLRVTDSQGA 789
Cdd:cd00146     1 PTASVSAPPV-AELGASVTFSAS-DSSGGSIVSYKWDFGD-----GEVSSSGEPTV--THTYTKPGTYTVTLTVTNAVGS 71

                          90
                  ....*....|
gi 270265853  790 SDTDTATVEV 799
Cdd:cd00146    72 SSTKTTTVVV 81
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 520-608 5.44e-07

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 48.26  E-value: 5.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  520 PVANAGPNHTITLPQnSITLNGNqSSDDHQIVLYEWSLGPGSegkhVVMQGVQTPylHLSAMQEGDYTFQLKVTDSSRQQ 599
Cdd:cd00146     1 PTASVSAPPVAELGA-SVTFSAS-DSSGGSIVSYKWDFGDGE----VSSSGEPTV--THTYTKPGTYTVTLTVTNAVGSS 72


                  ....*....
gi 270265853  600 STAVVTVIV 608
Cdd:cd00146    73 STKTTTVVV 81
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 424-512 1.13e-06

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 47.49  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  424 PPVAVVSPQLQELTLPLT-SAlidgsQSTDDTEIVSYHWEEINGPFIeektSVDSPVLRLSNLDPGNYSFRLTVTDSDGA 502
Cdd:cd00146     1 PTASVSAPPVAELGASVTfSA-----SDSSGGSIVSYKWDFGDGEVS----SSGEPTVTHTYTKPGTYTVTLTVTNAVGS 71

                          90
                  ....*....|
gi 270265853  503 TNSTTAALIV 512
Cdd:cd00146    72 SSTKTTTVVV 81
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 519-608 1.84e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.88  E-value: 1.84e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   519 PPVANAGPNHTITLPQnSITLNGNQSSD-DHQIVLYEWSLGPGSEG-----KHVvmqgvqtpYlhlsaMQEGDYTFQLKV 592
Cdd:pfam18911    3 APVADAGGDRIVAEGE-TVTFDASASDDpDGDILSYRWDFGDGTTAtganvSHT--------Y-----AAPGTYTVTLTV 68

                           90
                   ....*....|....*..
gi 270265853   593 TDSS-RQQSTAVVTVIV 608
Cdd:pfam18911   69 TDDSgASNSTATDTVTV 85
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 707-799 2.13e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.49  E-value: 2.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   707 NSPPRARAGGRhVLVLPNNSITLDGSRSTD-DQRIVSYLWirdgqspaagDVIDGSdhsvALQLTNLV-----EGVYTFH 780
Cdd:pfam18911    1 NAAPVADAGGD-RIVAEGETVTFDASASDDpDGDILSYRW----------DFGDGT----TATGANVShtyaaPGTYTVT 65

                           90       100
                   ....*....|....*....|
gi 270265853   781 LRVTDSQGASD-TDTATVEV 799
Cdd:pfam18911   66 LTVTDDSGASNsTATDTVTV 85
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 422-512 2.77e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.49  E-value: 2.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   422 NLPPVAVVSPQlQELTLPLTSALiDGSQSTD-DTEIVSYHWEEINGpfieekTSVDSPVLRLSNLDPGNYSFRLTVTDSD 500
Cdd:pfam18911    1 NAAPVADAGGD-RIVAEGETVTF-DASASDDpDGDILSYRWDFGDG------TTATGANVSHTYAAPGTYTVTLTVTDDS 72

                           90
                   ....*....|...
gi 270265853   501 GATNST-TAALIV 512
Cdd:pfam18911   73 GASNSTaTDTVTV 85
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
472-809 5.31e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 47.30  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  472 KTSVDSPVLRLSNLDPGN-YSFRLTVTDSDGATNSTTAALIVNNAVdyPPVANAGPNHTITLPqNSITLNGnQSSDDHQI 550
Cdd:COG3401   186 TVTSTTLVDGGGDIEPGTtYYYRVAATDTGGESAPSNEVSVTTPTT--PPSAPTGLTATADTP-GSVTLSW-DPVTESDA 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  551 VLYEWSLGPGSEGKHVVMQGVQ-TPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNrPPVAVAGPdkelifp 629
Cdd:COG3401   262 TGYRVYRSNSGDGPFTKVATVTtTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLT-PPAAPSGL------- 333

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  630 veSATLDGSSS-------SDDHGIVFYH---WEHVRGPSAVEMENIDKAIATVTGLQVG-TYHFRLTVKDQQGLSSTSTL 698
Cdd:COG3401   334 --TATAVGSSSitlswtaSSDADVTGYNvyrSTSGGGTYTKIAETVTTTSYTDTGLTPGtTYYYKVTAVDAAGNESAPSE 411

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853  699 TVAVKKENNsPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGSDHSVALQLTNLVEGVYT 778
Cdd:COG3401   412 EVSATTASA-ASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490

                         330       340       350
                  ....*....|....*....|....*....|.
gi 270265853  779 FHLRVTDSQGASDTDTATVEVQPDPRKSGLV 809
Cdd:COG3401   491 VTTGSLVGGSGASSVTNSVSVIGASAAAAVG 521
MANEC pfam07502
MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the ...
 47-78 6.60e-04

MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the N-terminal region of several membrane-associated and extracellular proteins. Although formerly called MANSC (for motif at N terminus with seven cysteines) it has now been renamed by MANEC (motif at N terminus with eight cysteines) by Richard Mitter and Stephen Fitzgerald after the discovery of an eighth conserved cysteine. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors.


Pssm-ID: 462186  Cd Length: 90  Bit Score: 39.60  E-value: 6.60e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 270265853    47 DCTAACCDLSSCDLAwWFE---------GRCYLVSCPHKEN 78
Cdd:pfam07502   38 DCVRACCSTPRCNLA-VFEerpggedaiPSCYLFNCLYPSR 77
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 389-616 7.19e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.92  E-value: 7.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   389 LSVGLYVFKVTVSSENA--FGEGFVNVTVKPARRVnlPPVAVVSPQLQELTLPLtsaLIDGSQSTD------DTEIVSYH 460
Cdd:TIGR00864 2219 LAAGHYCFVFSLSFEDTplKKAACANLGVAAARLM--PIIEGGSYRVWSDTQDL---QLDAEESYDpnldddDQSLLHFH 2293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   461 WEEINGPFIEEKTSV-------DSPVLRL--SNLDPG-NYSFRLTVTDSDGATNSTTAALIVNNA---VDYPPVANAGPN 527
Cdd:TIGR00864 2294 WACQASSKGEAGCCAlnfglggKGPTLGIpgEELAAGiEYTFKLSIGKAGMKEEATNQTVLIQSGhipIVSLECVSCKAQ 2373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   528 HTITLPQNS-ITLNG---NQSSDDHQ------------IVLYEWSLGPGSEGKHVVM-QGVqtpyLHLSamqEGdYTFQL 590
Cdd:TIGR00864 2374 ALYEVSQNSyVYLEGrclNCQSGFHRgrwaartfqndtLVLDESSTSTGSAGMNLVLrQGV----LHDG---EG-YNFTL 2445

                          250       260
                   ....*....|....*....|....*.
gi 270265853   591 KVTDSSRQQSTAvVTVIVQPenNRPP 616
Cdd:TIGR00864 2446 HVLDDSGDEEGA-ASIRLHH--NMPP 2468
PARM pfam17061
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 193-328 9.16e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 9.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270265853   193 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 262
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270265853   263 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTVKELTV 328
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVTCELI 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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