|
Name |
Accession |
Description |
Interval |
E-value |
| Dzip-like_N |
pfam13815 |
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ... |
24-144 |
3.81e-44 |
|
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.
Pssm-ID: 433498 [Multi-domain] Cd Length: 118 Bit Score: 152.09 E-value: 3.81e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 24 FKFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGITFCNLDREVCsrcGQPVDPALLKVLRLAQLIIEYLLHCQDC 103
Cdd:pfam13815 1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEA---PHFVDPHFLKLFRLAQLTIEYLLHSQEC 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 283436230 104 LSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESR 144
Cdd:pfam13815 78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
121-468 |
8.57e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 121 QQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLMQTGTHsyhtchlcdktfmNATFLRGHIQRRHAGVAEGGKQKK 200
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK-------------KADEAKKAEEAKKADEAKKAEEKK 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 201 QEQPVEEVlEELRaklkwtqgELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwDEFKN 280
Cdd:PTZ00121 1547 KADELKKA-EELK--------KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA---EEAKK 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 281 VAKQNSTLEEklraLQSHSVMESKLGSLRDEESEEwLRQARELQALREKTEIQKTEWKRKVKElhEEHMAEKKELQEENQ 360
Cdd:PTZ00121 1615 AEEAKIKAEE----LKKAEEEKKKVEQLKKKEAEE-KKKAEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDE 1687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 361 RLQAslsqDQKKAAAQSQCQISTLRAQLQEQARiiaSQEEMIQSLSLRKVEgIHKVPKAVDTEEDSPEEEMEDsQDEQHK 440
Cdd:PTZ00121 1688 KKAA----EALKKEAEEAKKAEELKKKEAEEKK---KAEELKKAEEENKIK-AEEAKKEAEEDKKKAEEAKKD-EEEKKK 1758
|
330 340
....*....|....*....|....*...
gi 283436230 441 VLAALRRNPTLLKHFRPILEDTLEEKLE 468
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
198-405 |
2.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 198 QKKQEQPVEEVLEELRAKLKWTQGELEAQrEAERQRQLQEAELIHQREIEAKKEFDKwKEQEWTKLYGEIDKLKKLFWDE 277
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAAL-KKEEKALLKQLAALERRIAALARRIRA-LEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 278 FKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELH------EEHMAE 351
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalraelEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 283436230 352 KKELQEENQRLQASLSQ---DQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSL 405
Cdd:COG4942 176 LEALLAELEEERAALEAlkaERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
197-476 |
9.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 9.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 197 KQKKQEQPVEEVLEELRAKLKWTQGeLEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWD 276
Cdd:TIGR02168 207 RQAEKAERYKELKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 277 ---EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMAEKK 353
Cdd:TIGR02168 286 lqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 354 ELQEENQRLQAS--LSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEgihKVPKAVDTEEDSPEEEM 431
Cdd:TIGR02168 366 ELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE---LLKKLEEAELKELQAEL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 283436230 432 EDSQDEQHKVLAALRRNPTLLKHFRPILE------DTLEEKLESMGIRKDA 476
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEeaeqalDAAERELAQLQARLDS 493
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
141-393 |
1.61e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 141 EESRRRRKMISTLQQLLMQTGTHS--YHTCHLCDKTFMNATFlrgHIQRRHAGVAEGGKQKKQEQPVEEVLEelraklkw 218
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTvrYNGQTMTENEFLNQLL---HIVQHQKAVSERQQQEKFEKMEQERLR-------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 219 tQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwdefKNVAKQNSTLEEKLRALQSH 298
Cdd:pfam17380 303 -QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ------EERKRELERIRQEEIAMEIS 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 299 SVMESKLGSLRDEESEEWLRQarELQALReKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQ-------K 371
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQ--ELEAAR-KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervR 452
|
250 260
....*....|....*....|..
gi 283436230 372 KAAAQSQCQISTLRAQLQEQAR 393
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKR 474
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
245-396 |
3.55e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 245 EIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVAKQNSTLEEKLRALQ-SHSVMESKLGSLRDEESEEWLRQAREL 323
Cdd:smart00787 127 RLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRdRKDALEEELRQLKQLEDELEDCDPTEL 206
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 283436230 324 QALREKteiqktewkrkVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAaqsqcQISTLRAQLQEQARIIA 396
Cdd:smart00787 207 DRAKEK-----------LKKLLQEIMIKVKKLEELEEELQELESKIEDLTN-----KKSELNTEIAEAEKKLE 263
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Dzip-like_N |
pfam13815 |
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ... |
24-144 |
3.81e-44 |
|
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.
Pssm-ID: 433498 [Multi-domain] Cd Length: 118 Bit Score: 152.09 E-value: 3.81e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 24 FKFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGITFCNLDREVCsrcGQPVDPALLKVLRLAQLIIEYLLHCQDC 103
Cdd:pfam13815 1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEA---PHFVDPHFLKLFRLAQLTIEYLLHSQEC 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 283436230 104 LSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESR 144
Cdd:pfam13815 78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
121-468 |
8.57e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 121 QQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLMQTGTHsyhtchlcdktfmNATFLRGHIQRRHAGVAEGGKQKK 200
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK-------------KADEAKKAEEAKKADEAKKAEEKK 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 201 QEQPVEEVlEELRaklkwtqgELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwDEFKN 280
Cdd:PTZ00121 1547 KADELKKA-EELK--------KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA---EEAKK 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 281 VAKQNSTLEEklraLQSHSVMESKLGSLRDEESEEwLRQARELQALREKTEIQKTEWKRKVKElhEEHMAEKKELQEENQ 360
Cdd:PTZ00121 1615 AEEAKIKAEE----LKKAEEEKKKVEQLKKKEAEE-KKKAEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDE 1687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 361 RLQAslsqDQKKAAAQSQCQISTLRAQLQEQARiiaSQEEMIQSLSLRKVEgIHKVPKAVDTEEDSPEEEMEDsQDEQHK 440
Cdd:PTZ00121 1688 KKAA----EALKKEAEEAKKAEELKKKEAEEKK---KAEELKKAEEENKIK-AEEAKKEAEEDKKKAEEAKKD-EEEKKK 1758
|
330 340
....*....|....*....|....*...
gi 283436230 441 VLAALRRNPTLLKHFRPILEDTLEEKLE 468
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
198-405 |
2.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 198 QKKQEQPVEEVLEELRAKLKWTQGELEAQrEAERQRQLQEAELIHQREIEAKKEFDKwKEQEWTKLYGEIDKLKKLFWDE 277
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAAL-KKEEKALLKQLAALERRIAALARRIRA-LEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 278 FKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELH------EEHMAE 351
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalraelEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 283436230 352 KKELQEENQRLQASLSQ---DQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSL 405
Cdd:COG4942 176 LEALLAELEEERAALEAlkaERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-400 |
4.00e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 4.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 186 QRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGElEAQREAERQRQLQEAELIHQREIEAKKEFDKwKEQEWTKLYG 265
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAE-EYELLAELARLEQDIARLEERRRELEERLEE-LEEELAELEE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 266 EIDKLKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEwKRKVKELH 345
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ-LEELEEAE 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 283436230 346 EEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEE 400
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
197-476 |
9.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 9.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 197 KQKKQEQPVEEVLEELRAKLKWTQGeLEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWD 276
Cdd:TIGR02168 207 RQAEKAERYKELKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 277 ---EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMAEKK 353
Cdd:TIGR02168 286 lqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 354 ELQEENQRLQAS--LSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEgihKVPKAVDTEEDSPEEEM 431
Cdd:TIGR02168 366 ELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE---LLKKLEEAELKELQAEL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 283436230 432 EDSQDEQHKVLAALRRNPTLLKHFRPILE------DTLEEKLESMGIRKDA 476
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEeaeqalDAAERELAQLQARLDS 493
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-408 |
9.67e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 9.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 82 ALLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLlmqtg 161
Cdd:COG1196 229 LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD----- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 162 thsyhtchlcdktfmnatfLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI 241
Cdd:COG1196 304 -------------------IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 242 hQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLfwdefknvAKQNSTLEEKLRALQShsvmesklgslRDEESEEWLRQAR 321
Cdd:COG1196 365 -EALLEAEAELAEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEA-----------LLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 322 ELQALREKTEIQKTEWKRKVKELHEEHmaekKELQEENQRLQASLSQDQKKAAAQSQcQISTLRAQLQEQARIIASQEEM 401
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEE----AELEEEEEALLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEA 499
|
....*..
gi 283436230 402 IQSLSLR 408
Cdd:COG1196 500 EADYEGF 506
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
141-393 |
1.61e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 141 EESRRRRKMISTLQQLLMQTGTHS--YHTCHLCDKTFMNATFlrgHIQRRHAGVAEGGKQKKQEQPVEEVLEelraklkw 218
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTvrYNGQTMTENEFLNQLL---HIVQHQKAVSERQQQEKFEKMEQERLR-------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 219 tQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwdefKNVAKQNSTLEEKLRALQSH 298
Cdd:pfam17380 303 -QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ------EERKRELERIRQEEIAMEIS 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 299 SVMESKLGSLRDEESEEWLRQarELQALReKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQ-------K 371
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQ--ELEAAR-KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervR 452
|
250 260
....*....|....*....|..
gi 283436230 372 KAAAQSQCQISTLRAQLQEQAR 393
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKR 474
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
209-409 |
1.73e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 209 LEELRAKLKWTQGELEAQREAERQRQLQEAELIHQ-REIEAKKEFDKWKEQEWTKlygEIDKLKklfwdefknvAKQNST 287
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAElAELEAELEELRLELEELEL---ELEEAQ----------AEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 288 LEEKLRALQSHSVMESKLGSLRDEEsEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLS 367
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 283436230 368 QDQKKAAAQSQC--QISTLRAQLQEQARIIASQEEMIQSLSLRK 409
Cdd:COG1196 373 ELAEAEEELEELaeELLEALRAAAELAAQLEELEEAEEALLERL 416
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
311-418 |
1.89e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 47.51 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 311 EESEEWLRQ-ARELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEE-NQRLQASlsqdqKKAAAQSqcqISTLRAQL 388
Cdd:PRK00409 526 EELERELEQkAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA-----KKEADEI---IKELRQLQ 597
|
90 100 110
....*....|....*....|....*....|....
gi 283436230 389 QEQARIIASQE--EMIQSL--SLRKVEGIHKVPK 418
Cdd:PRK00409 598 KGGYASVKAHEliEARKRLnkANEKKEKKKKKQK 631
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
201-364 |
2.76e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 201 QEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEaeliHQREIEakkefdkwkeqewtKLYGEIDKLKklfwdefkn 280
Cdd:COG2433 374 RGLSIEEALEELIEKELPEEEPEAEREKEHEERELTE----EEEEIR--------------RLEEQVERLE--------- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 281 vaKQNSTLEEKLRAL-QSHSVMESKLGSLRDEESEEwLRQARELQALREktEIQKTEwkrkvKELHEEHMaEKKELQEEN 359
Cdd:COG2433 427 --AEVEELEAELEEKdERIERLERELSEARSEERRE-IRKDREISRLDR--EIERLE-----RELEEERE-RIEELKRKL 495
|
....*
gi 283436230 360 QRLQA 364
Cdd:COG2433 496 ERLKE 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-532 |
3.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 193 AEGGKQKKQEQpveEVLEELRAKLKWTQGELEAQREAERQRQLQE----AELIHQREIEAKKEFDKWKEQEWTKLYGEID 268
Cdd:PTZ00121 1446 ADEAKKKAEEA---KKAEEAKKKAEEAKKADEAKKKAEEAKKADEakkkAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 269 KLKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEH 348
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 349 MAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARiiasqeemiQSLSLRKVEGIHKVPKAVDTEEDSPE 428
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK---------KAEELKKAEEENKIKAAEEAKKAEED 1673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 429 EEMED----SQDEQHKVLAALRRNPTLLKHFRPILEDTLEEKLESMGIRKDAKGISIQTlrhlESLLRVQREQK-----A 499
Cdd:PTZ00121 1674 KKKAEeakkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA----EEAKKEAEEDKkkaeeA 1749
|
330 340 350
....*....|....*....|....*....|....
gi 283436230 500 RKFSEFLSLRGKLVKEVTSRAKE-RQENGAVVSQ 532
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEiRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-408 |
4.35e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 199 KKQEQPVEEVLEELRAKLKWTQGELEAQRE--AERQRQLQEAEL-IHQREIEAKKEFDKWKEQEWTKLYGEIDKLKklfw 275
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSelKELEARIEELEEdLHKLEEALNDLEARLSHSRIPEIQAELSKLE---- 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 276 defknvaKQNSTLEEKLRALqshsvmESKLGSL-RDEESEEWLRQarELQALREKTEIQKTEWKRKVKELHeehmAEKKE 354
Cdd:TIGR02169 805 -------EEVSRIEARLREI------EQKLNRLtLEKEYLEKEIQ--ELQEQRIDLKEQIKSIEKEIENLN----GKKEE 865
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 283436230 355 LQEENQRLQASLSQDQKKAAAQSQcQISTLRAQLQEQARIIASQEEMIQSLSLR 408
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKRKR 918
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-529 |
6.93e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 193 AEGGKQKKQEQpvEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREiEAKKEFDKWKEQEWTKLYGEIDKLKK 272
Cdd:PTZ00121 1331 ADAAKKKAEEA--KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD-AAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 273 lfwDEFKNVAkqnstlEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTE-----IQKTEWKRKVKELHEE 347
Cdd:PTZ00121 1408 ---DELKKAA------AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKkaeeaKKKAEEAKKADEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 348 HMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLR-AQLQEQARIIASQEEMIQSLSLRKVEGIHK---VPKAVDTE 423
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKkAEEAKKADEAKKAEEAKKADEAKKAEEKKKadeLKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 424 EDSPEEEMEDSQDEQHKVLAALRRNPTLLKhfrpiledtLEEK--LESMGIRKDAKGISIQTLRHLES----LLRVQREQ 497
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKK---------AEEAriEEVMKLYEEEKKMKAEEAKKAEEakikAEELKKAE 1629
|
330 340 350
....*....|....*....|....*....|..
gi 283436230 498 KARKFSEFLSLRGKLVKEVTSRAKERQENGAV 529
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
173-409 |
2.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 173 KTFMNATFLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEF 252
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQI 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 253 DKWKEQEWTKLYGEIDKLKKLFwDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEES---EEWLRQARELQALREK 329
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLL-MKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsirEISCQQHTLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 330 TEiQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRK 409
Cdd:TIGR00618 385 QQ-QKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-401 |
6.68e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 181 LRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQ-- 258
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLke 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 259 EWTKLYGEIDKLKKlfwdEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWK 338
Cdd:TIGR02168 797 ELKALREALDELRA----ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 339 RKVKEL------HEEHMAEKK-----------ELQEENQRLQASLSQDQKKaAAQSQCQISTLRAQLQEQARIIASQEEM 401
Cdd:TIGR02168 873 SELEALlnerasLEEALALLRseleelseelrELESKRSELRRELEELREK-LAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
|
| MPS2 |
pfam17060 |
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component ... |
283-403 |
6.90e-04 |
|
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component of the spindle pole body (SPB) required for the insertion of the nascent SPB into the nuclear envelope and for the proper execution of spindle pole body (SPB) duplication. It seems that Mps2-Spc24 interaction may contribute to the localization of Spc24 and other kinetochore components to the inner plaque of the SPB.
Pssm-ID: 407228 [Multi-domain] Cd Length: 340 Bit Score: 41.88 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 283 KQNSTLEEKLRALQSHSVMESKLGSLRDEES--EEWLRQA-RELQALRekteiqktewkRKVKELHEEHMAEKKELQEEN 359
Cdd:pfam17060 134 KPQESPETPRRINRKYKSLELRVESMKDELEfkDETIMEKdRELTELT-----------STISKLKDKYDFLSREFEFYK 202
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 283436230 360 QRlQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQ 403
Cdd:pfam17060 203 QH-HEHGGNNSIKTATKHEFIISELKRKLQEQNRLIRILQEQIQ 245
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
214-401 |
9.41e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 214 AKLKWTQGELEAQREAERQrqLQEAElihqREIEAKKefdKWKEQEWTKlygEIDKLKKLFWDEFKNVAKQNSTLEEKLr 293
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRI--LEEAK----KEAEAIK---KEALLEAKE---EIHKLRNEFEKELRERRNELQKLEKRL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 294 aLQSHSVMESKLGSLRDEEseewlrqaRELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEenqrlQASLSQDQKKa 373
Cdd:PRK12704 92 -LQKEENLDRKLELLEKRE--------EELEKKEKELEQKQQELEKKEEELEELIEEQLQELER-----ISGLTAEEAK- 156
|
170 180
....*....|....*....|....*...
gi 283436230 374 aaqsQCQISTLRAQLQEQARIIASQEEM 401
Cdd:PRK12704 157 ----EILLEKVEEEARHEAAVLIKEIEE 180
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
104-272 |
1.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 104 LSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLMQTGTHSYHTCHL----CDKTFMNAT 179
Cdd:COG4942 60 LERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLspedFLDAVRRLQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 180 FLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI--HQREIEAKKEFDKWKE 257
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLarLEKELAELAAELAELQ 219
|
170
....*....|....*
gi 283436230 258 QEWTKLYGEIDKLKK 272
Cdd:COG4942 220 QEAEELEALIARLEA 234
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
201-411 |
1.78e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 201 QEQPVEEVLEELRAKLKWTQGELEAQREaerqrQLQEAElihqreieakKEFDKWKEQewtklYGEIDklkklFWDEFKN 280
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRK-----ELEEAE----------AALEEFRQK-----NGLVD-----LSEEAKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 281 VAKQNSTLEEKLRALQS-HSVMESKLGSLRDEESEEW-----LRQARELQALREK---TEIQKTEWKRKVKELHEEHmae 351
Cdd:COG3206 217 LLQQLSELESQLAEARAeLAEAEARLAALRAQLGSGPdalpeLLQSPVIQQLRAQlaeLEAELAELSARYTPNHPDV--- 293
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 352 kKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVE 411
Cdd:COG3206 294 -IALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
190-501 |
1.90e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 190 AGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQR---------EAERQRQLQEAELIHQREIEAKKEFD-KWKEQE 259
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQElklkeqakkALEYYQLKEKLELEEEYLLYLDYLKLnEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 260 WTKLY----GEIDKLKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKT 335
Cdd:pfam02463 242 LQELLrdeqEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 336 EWKRKVKEL-----------HEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQS 404
Cdd:pfam02463 322 EKKKAEKELkkekeeieeleKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 405 LSLRKVEGIHKVPKAVDTEEDSPEEEMEDSQDEQHKVLAALRRNPTLLKHFRpILEDTLEEKLESMGIRKDAKGISIQTL 484
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEEL-EKQELKLLKDELELKKSEDLLKETQLV 480
|
330
....*....|....*..
gi 283436230 485 RHLESLLRVQREQKARK 501
Cdd:pfam02463 481 KLQEQLELLLSRQKLEE 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
197-374 |
2.19e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 197 KQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI-HQREIEAK-KEFDKWKEQEwtKLYGEIDKLKKLF 274
Cdd:PRK03918 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKkEIEELEEKvKELKELKEKA--EEYIKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 275 WDEFKNVAKQNSTLEEKLRALQSH----SVMESKLGSLRDEESE---------EWLRQARELQALREKTEIQKTEWK--- 338
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERikelEEKEERLEELKKKLKElekrleeleERHELYEEAKAKKEELERLKKRLTglt 385
|
170 180 190
....*....|....*....|....*....|....*..
gi 283436230 339 -RKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAA 374
Cdd:PRK03918 386 pEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
197-361 |
2.48e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 197 KQKKQEQPVEEVLEELRAKlkwtqgELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKlygEIDKLKKLFWD 276
Cdd:pfam17380 428 EQEEARQREVRRLEEERAR------EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRK---RAEEQRRKILE 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 277 EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQK-----TEWKRKVKELHEEHMAE 351
Cdd:pfam17380 499 KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEqmrkaTEERSRLEAMEREREMM 578
|
170
....*....|
gi 283436230 352 KKELQEENQR 361
Cdd:pfam17380 579 RQIVESEKAR 588
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
198-393 |
3.22e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.32 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 198 QKKQEQPVEEVLEELRAKLKWTQGElEAQREAERQRQLQeaelihQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDE 277
Cdd:pfam15709 327 KREQEKASRDRLRAERAEMRRLEVE-RKRREQEEQRRLQ------QEQLERAEKMREELELEQQRRFEEIRLRKQRLEEE 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 278 fknvaKQNSTLEEKLRALQSHSVMESKlgslrDEESEEWLRQARELQALREKTEIQKTEW-KRKVKELHEEHMAEKKEL- 355
Cdd:pfam15709 400 -----RQRQEEEERKQRLQLQAAQERA-----RQQQEEFRRKLQELQRKKQQEEAERAEAeKQRQKELEMQLAEEQKRLm 469
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 283436230 356 --------------QEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQAR 393
Cdd:pfam15709 470 emaeeerleyqrqkQEAEEKARLEAEERRQKEEEAARLALEEAMKQAQEQAR 521
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
245-396 |
3.55e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 245 EIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVAKQNSTLEEKLRALQ-SHSVMESKLGSLRDEESEEWLRQAREL 323
Cdd:smart00787 127 RLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRdRKDALEEELRQLKQLEDELEDCDPTEL 206
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 283436230 324 QALREKteiqktewkrkVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAaqsqcQISTLRAQLQEQARIIA 396
Cdd:smart00787 207 DRAKEK-----------LKKLLQEIMIKVKKLEELEEELQELESKIEDLTN-----KKSELNTEIAEAEKKLE 263
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
197-372 |
5.44e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 197 KQKKQEQpVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEFD-KWKEQEWTKLYGEIDKLKKLFW 275
Cdd:TIGR04523 358 NSEKQRE-LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQiKKLQQEKELLEKEIERLKETII 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283436230 276 D---EFKNVAKQNSTLEEKLRalqshsvmesKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELhEEHMAEK 352
Cdd:TIGR04523 437 KnnsEIKDLTNQDSVKELIIK----------NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEK 505
|
170 180
....*....|....*....|...
gi 283436230 353 KELQEENQRL---QASLSQDQKK 372
Cdd:TIGR04523 506 KELEEKVKDLtkkISSLKEKIEK 528
|
|
| |
