NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|285393969|ref|NP_001165420|]
View 

kxDL motif-containing protein 1 [Homo sapiens]

Protein Classification

KxDL motif-containing protein( domain architecture ID 10562996)

KxDL motif-containing protein similar to Saccharomyces cerevisiae biogenesis of lysosome-related organelles complex 1 (BLOC-1 ) subunit KXD1, a component of the BLOC-1 complex that is involved in endosomal cargo sorting

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 14-93 3.17e-33

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


:

Pssm-ID: 463018  Cd Length: 80  Bit Score: 113.01  E-value: 3.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285393969   14 RILSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSARLQQMSERFLHHTRTLVEMKRDLDSIFRRIRTLKGKLAR 93
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLAK 80
 
Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 14-93 3.17e-33

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


Pssm-ID: 463018  Cd Length: 80  Bit Score: 113.01  E-value: 3.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285393969   14 RILSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSARLQQMSERFLHHTRTLVEMKRDLDSIFRRIRTLKGKLAR 93
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLAK 80
 
Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 14-93 3.17e-33

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


Pssm-ID: 463018  Cd Length: 80  Bit Score: 113.01  E-value: 3.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285393969   14 RILSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSARLQQMSERFLHHTRTLVEMKRDLDSIFRRIRTLKGKLAR 93
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLAK 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH