|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
103-437 |
5.28e-13 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 71.65 E-value: 5.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 103 KPRPYACPLCPKAYKTAPELRSHGRSHTGEKPFPCPECGR--RFMQPVCLRVHLASHAGELPFRCAH-CPKAYGALSKLK 179
Cdd:COG5048 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCdkSFSRPLELSRHLRTHHNNPSDLNSKsLPLSNSKASSSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 180 IHQRGHTGERPYACADCGKSFADPSVFRKHRRTHAGLRPYSCERCGKAYAELK----------------------DLRNH 237
Cdd:COG5048 110 LSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPqsnslhpplpanslskdpssnlSLLIS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 238 ERSHTGERPFLCSECGKSFSR-------------SSSLTCHQRIHA---------------------AQKPYRCPACGKG 283
Cdd:COG5048 190 SNVSTSIPSSSENSPLSSSYSipssssdqnlensSSSLPLTTNSQLspksllsqspsslsssdssssASESPRSSLPTAS 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 284 FTQLSSYQSHERTHSG-EKPFLCPRCGRMFSDPSSFRRHQRAH----EGVKPYHC--EKCGKDFRQPADLAMHRRVHTGD 356
Cdd:COG5048 270 SQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRSVnhsgESLKPFSCpySLCGKLFSRNDALKRHILLHTSI 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 357 RPFKC--LQCDKTFVASWDLKRHALVH-----SGQRPFRCE--ECGRAFAERASLTKHSRVHSGERP--FHCNACGKSFV 425
Cdd:COG5048 350 SPAKEklLNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFN 429
|
410
....*....|..
gi 289547682 426 VSSSLRKHERTH 437
Cdd:COG5048 430 RHYNLIPHKKIH 441
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
271-618 |
3.86e-08 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 56.24 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 271 AQKPYRCPACGKGFTQLSSYQSHERTHSGEKPFLCPRCGR--MFSDPSSFRRHQRAHEGVKPYHCEKCGKDFRQPADLAM 348
Cdd:COG5048 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCdkSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 349 HRRVHTGdrPFKCLQCDKtfvaswdlkrHALVHSGQRPFRCEEcgrafaerasltkHSRVHSGERPFH-CNACGKSFVVS 427
Cdd:COG5048 110 LSSSSSN--SNDNNLLSS----------HSLPPSSRDPQLPDL-------------LSISNLRNNPLPgNNSSSVNTPQS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 428 SSLR-----KHERTHRSSEAAGVPPAQELVVGLALPVGVAGESSA--APAAGAGLGDPPAGLLGLPPESGGV--MATQWQ 498
Cdd:COG5048 165 NSLHpplpaNSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYsiPSSSSDQNLENSSSSLPLTTNSQLSpkSLLSQS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 499 VVG--MTVEHVECQDagVREAPGPLEGAGEAGGEEADEKPPQ-----FVCRECKETFSTMTLLRRHERSH----PELRPF 567
Cdd:COG5048 245 PSSlsSSDSSSSASE--SPRSSLPTASSQSSSPNESDSSSEKgfslpIKSKQCNISFSRSSPLTRHLRSVnhsgESLKPF 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 289547682 568 PCT--QCGKSFSDRAGLRKHSRTHSSVRPYTCP--HCPKAFLSASDLRKHERTHP 618
Cdd:COG5048 323 SCPysLCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQQ 377
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
233-258 |
1.48e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 39.28 E-value: 1.48e-04
10 20
....*....|....*....|....*.
gi 289547682 233 DLRNHERSHTGERPFLCSECGKSFSR 258
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
582-606 |
2.61e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.81 E-value: 2.61e-03
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
103-437 |
5.28e-13 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 71.65 E-value: 5.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 103 KPRPYACPLCPKAYKTAPELRSHGRSHTGEKPFPCPECGR--RFMQPVCLRVHLASHAGELPFRCAH-CPKAYGALSKLK 179
Cdd:COG5048 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCdkSFSRPLELSRHLRTHHNNPSDLNSKsLPLSNSKASSSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 180 IHQRGHTGERPYACADCGKSFADPSVFRKHRRTHAGLRPYSCERCGKAYAELK----------------------DLRNH 237
Cdd:COG5048 110 LSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPqsnslhpplpanslskdpssnlSLLIS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 238 ERSHTGERPFLCSECGKSFSR-------------SSSLTCHQRIHA---------------------AQKPYRCPACGKG 283
Cdd:COG5048 190 SNVSTSIPSSSENSPLSSSYSipssssdqnlensSSSLPLTTNSQLspksllsqspsslsssdssssASESPRSSLPTAS 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 284 FTQLSSYQSHERTHSG-EKPFLCPRCGRMFSDPSSFRRHQRAH----EGVKPYHC--EKCGKDFRQPADLAMHRRVHTGD 356
Cdd:COG5048 270 SQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRSVnhsgESLKPFSCpySLCGKLFSRNDALKRHILLHTSI 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 357 RPFKC--LQCDKTFVASWDLKRHALVH-----SGQRPFRCE--ECGRAFAERASLTKHSRVHSGERP--FHCNACGKSFV 425
Cdd:COG5048 350 SPAKEklLNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFN 429
|
410
....*....|..
gi 289547682 426 VSSSLRKHERTH 437
Cdd:COG5048 430 RHYNLIPHKKIH 441
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
246-408 |
1.52e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 60.48 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 246 PFLCSECGKSFSRSSSLTCHQR--IH--AAQKPYRCPA--CGKGFTQLSSYQSHERTHSGEKPFLCPRCGRMFSDPSSF- 318
Cdd:COG5048 289 PIKSKQCNISFSRSSPLTRHLRsvNHsgESLKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLn 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 319 -RRHQRAH-----EGVKPYHCE--KCGKDFRQPADLAMHRRVHTGDRP--FKCLQCDKTFVASWDLKRHALVHSGQRPFR 388
Cdd:COG5048 369 nEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448
|
170 180
....*....|....*....|
gi 289547682 389 CEECGRaFAERASLTKHSRV 408
Cdd:COG5048 449 CSILKS-FRRDLDLSNHGKD 467
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
271-618 |
3.86e-08 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 56.24 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 271 AQKPYRCPACGKGFTQLSSYQSHERTHSGEKPFLCPRCGR--MFSDPSSFRRHQRAHEGVKPYHCEKCGKDFRQPADLAM 348
Cdd:COG5048 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCdkSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 349 HRRVHTGdrPFKCLQCDKtfvaswdlkrHALVHSGQRPFRCEEcgrafaerasltkHSRVHSGERPFH-CNACGKSFVVS 427
Cdd:COG5048 110 LSSSSSN--SNDNNLLSS----------HSLPPSSRDPQLPDL-------------LSISNLRNNPLPgNNSSSVNTPQS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 428 SSLR-----KHERTHRSSEAAGVPPAQELVVGLALPVGVAGESSA--APAAGAGLGDPPAGLLGLPPESGGV--MATQWQ 498
Cdd:COG5048 165 NSLHpplpaNSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYsiPSSSSDQNLENSSSSLPLTTNSQLSpkSLLSQS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 499 VVG--MTVEHVECQDagVREAPGPLEGAGEAGGEEADEKPPQ-----FVCRECKETFSTMTLLRRHERSH----PELRPF 567
Cdd:COG5048 245 PSSlsSSDSSSSASE--SPRSSLPTASSQSSSPNESDSSSEKgfslpIKSKQCNISFSRSSPLTRHLRSVnhsgESLKPF 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 289547682 568 PCT--QCGKSFSDRAGLRKHSRTHSSVRPYTCP--HCPKAFLSASDLRKHERTHP 618
Cdd:COG5048 323 SCPysLCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQQ 377
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
161-322 |
5.83e-07 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 52.39 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 161 LPFRCAHCPKAYGALSKLKIHQRG--HTGE--RPYAC--ADCGKSFADPSVFRKHRRTHAGLRPYSC--ERCGKAYAELK 232
Cdd:COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 233 DLRNHERSH-----TGERPFLC--SECGKSFSRSSSLTCHQRIHAAQKP--YRCPACGKGFTQLSSYQSHERTHSGEKPF 303
Cdd:COG5048 368 NNEPPQSLQqykdlKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
|
170
....*....|....*....
gi 289547682 304 LCPRCGRMFSDPSSFRRHQ 322
Cdd:COG5048 448 LCSILKSFRRDLDLSNHGK 466
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
215-298 |
5.03e-05 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 46.25 E-value: 5.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 215 GLRPYSCE--RCGKAYAELKDLRNHErshtgerpfLCSECGKSFSRSSSLTCHQRIHAAQKPYRCPACGKGFTQLSSYQS 292
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHM---------LHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
|
....*.
gi 289547682 293 HeRTHS 298
Cdd:COG5189 417 H-RKHS 421
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
233-258 |
1.48e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 39.28 E-value: 1.48e-04
10 20
....*....|....*....|....*.
gi 289547682 233 DLRNHERSHTGERPFLCSECGKSFSR 258
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
121-144 |
1.05e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 36.58 E-value: 1.05e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
582-606 |
2.61e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.81 E-value: 2.61e-03
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
344-437 |
2.63e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 40.47 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289547682 344 ADLAMHRRVHTGDRPFKC--LQCDKTFVASWDLKRHALvHSGQRPfrceecgrAFAERASLTKHSRVHSGERPFHCNACG 421
Cdd:COG5189 335 IDTPSRMLKVKDGKPYKCpvEGCNKKYKNQNGLKYHML-HGHQNQ--------KLHENPSPEKMNIFSAKDKPYRCEVCD 405
|
90
....*....|....*.
gi 289547682 422 KSFVVSSSLRKHeRTH 437
Cdd:COG5189 406 KRYKNLNGLKYH-RKH 420
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
345-369 |
2.91e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 2.91e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
178-201 |
3.08e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 3.08e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
554-577 |
3.17e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 3.17e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
401-425 |
3.30e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 3.30e-03
|
| zf-C2H2 |
pfam00096 |
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
567-589 |
5.37e-03 |
|
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.
Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.58 E-value: 5.37e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
373-397 |
6.13e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 34.65 E-value: 6.13e-03
|
| zf-C2H2 |
pfam00096 |
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
595-617 |
8.86e-03 |
|
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.
Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.20 E-value: 8.86e-03
|
|